RNA–Protein interactions for RNA: ENST00000610828.4

NEK3-205, Transcript of NIMA related kinase 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene NEK3, Length 2,396 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-205ENST00000610828 TNNT2P45379 298 aaPredicted RBP18.04■□□□□ 0.48
NEK3-205ENST00000610828 CCDC146Q8IYE0 955 aa18.04■□□□□ 0.48
NEK3-205ENST00000610828 YTHDC2Q9H6S0 1430 aaKnown RBP18.04■□□□□ 0.48
NEK3-205ENST00000610828 PLEKHH1Q9ULM0 1364 aa18.04■□□□□ 0.48
NEK3-205ENST00000610828 CGNL1Q0VF96 1302 aa18.03■□□□□ 0.48
NEK3-205ENST00000610828 PTPRMP28827 1452 aa18.03■□□□□ 0.48
NEK3-205ENST00000610828 ALKQ9UM73 1620 aa18.03■□□□□ 0.48
NEK3-205ENST00000610828 SRPK2P78362 688 aaKnown RBP18.03■□□□□ 0.48
NEK3-205ENST00000610828 PRAM1Q96QH2 718 aa18.03■□□□□ 0.48
NEK3-205ENST00000610828 POGKQ9P215 609 aa18.03■□□□□ 0.48
NEK3-205ENST00000610828 A2ML1A8K2U0 1454 aa18.02■□□□□ 0.48
NEK3-205ENST00000610828 CCDC136Q96JN2 1154 aa18.02■□□□□ 0.48
NEK3-205ENST00000610828 RBM19Q9Y4C8 960 aaKnown RBP18.02■□□□□ 0.48
NEK3-205ENST00000610828 ANKRD36BQ8N2N9 1353 aa18.02■□□□□ 0.48
NEK3-205ENST00000610828 MINK1Q8N4C8 1332 aaPredicted RBP18.01■□□□□ 0.47
NEK3-205ENST00000610828 USP32Q8NFA0 1604 aa18■□□□□ 0.47
NEK3-205ENST00000610828 POLR3AO14802 1390 aaPredicted RBP18■□□□□ 0.47
NEK3-205ENST00000610828 RIMS2Q9UQ26 1411 aa17.99■□□□□ 0.47
NEK3-205ENST00000610828 ZMYM3Q14202 1370 aa17.99■□□□□ 0.47
NEK3-205ENST00000610828 APAF1O14727 1248 aa17.98■□□□□ 0.47
NEK3-205ENST00000610828 ZNF521Q96K83 1311 aa17.98■□□□□ 0.47
NEK3-205ENST00000610828 GOLGA2Q08379 1002 aa17.97■□□□□ 0.47
NEK3-205ENST00000610828 A0A1W2PP64 1363 aa17.96■□□□□ 0.47
NEK3-205ENST00000610828 NINLQ9Y2I6 1382 aa17.96■□□□□ 0.47
NEK3-205ENST00000610828 ATAD2Q6PL18 1390 aa17.96■□□□□ 0.46
NEK3-205ENST00000610828 DUSP27Q5VZP5 1158 aa17.95■□□□□ 0.46
NEK3-205ENST00000610828 EXOC6Q8TAG9 804 aa17.95■□□□□ 0.46
NEK3-205ENST00000610828 NSD2O96028 1365 aa17.95■□□□□ 0.46
NEK3-205ENST00000610828 PLIN1O60240 522 aa17.94■□□□□ 0.46
NEK3-205ENST00000610828 MTHFSP49914 203 aa17.94■□□□□ 0.46
NEK3-205ENST00000610828 CDK19Q9BWU1 502 aa17.92■□□□□ 0.46
NEK3-205ENST00000610828 TERF2IPQ9NYB0 399 aa17.92■□□□□ 0.46
NEK3-205ENST00000610828 SHPRHQ149N8 1683 aa17.92■□□□□ 0.46
NEK3-205ENST00000610828 ABCC11Q96J66 1382 aa17.92■□□□□ 0.46
NEK3-205ENST00000610828 SLFN5Q08AF3 891 aa17.91■□□□□ 0.46
NEK3-205ENST00000610828 WAPLQ7Z5K2 1190 aa17.91■□□□□ 0.46
NEK3-205ENST00000610828 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.91■□□□□ 0.46
NEK3-205ENST00000610828 CFAP53Q96M91 514 aa17.91■□□□□ 0.46
NEK3-205ENST00000610828 SETD1AO15047 1707 aaKnown RBP17.9■□□□□ 0.46
NEK3-205ENST00000610828 TNRQ92752 1358 aa17.89■□□□□ 0.45
NEK3-205ENST00000610828 GGNBP2Q9H3C7 697 aa17.89■□□□□ 0.45
NEK3-205ENST00000610828 DLC1Q96QB1 1528 aa17.89■□□□□ 0.45
NEK3-205ENST00000610828 NGEFQ8N5V2 710 aa17.88■□□□□ 0.45
NEK3-205ENST00000610828 SPINK5Q9NQ38 1064 aaPredicted RBP17.88■□□□□ 0.45
NEK3-205ENST00000610828 CD163L1Q9NR16 1453 aa17.88■□□□□ 0.45
NEK3-205ENST00000610828 HDGFL2Q7Z4V5 671 aaPredicted RBP17.87■□□□□ 0.45
NEK3-205ENST00000610828 CABP1Q9NZU7 370 aa17.87■□□□□ 0.45
NEK3-205ENST00000610828 NRXN3Q9Y4C0 1643 aa17.87■□□□□ 0.45
NEK3-205ENST00000610828 TRMT2AQ8IZ69 625 aaKnown RBP17.87■□□□□ 0.45
NEK3-205ENST00000610828 HDGFP51858 240 aaKnown RBP17.86■□□□□ 0.45
NEK3-205ENST00000610828 RUNDC1Q96C34 613 aa17.86■□□□□ 0.45
NEK3-205ENST00000610828 METP08581 1390 aa17.86■□□□□ 0.45
NEK3-205ENST00000610828 E9PSI1 815 aa17.86■□□□□ 0.45
NEK3-205ENST00000610828 FYB1O15117 783 aa17.85■□□□□ 0.45
NEK3-205ENST00000610828 NEUROD2Q15784 382 aa17.85■□□□□ 0.45
NEK3-205ENST00000610828 WWC1Q8IX03 1113 aa17.84■□□□□ 0.45
NEK3-205ENST00000610828 DMRT2Q9Y5R5 561 aa17.84■□□□□ 0.45
NEK3-205ENST00000610828 CRBNQ96SW2 442 aa17.84■□□□□ 0.45
NEK3-205ENST00000610828 NKTRP30414 1462 aaKnown RBP17.84■□□□□ 0.45
NEK3-205ENST00000610828 RRP7AQ9Y3A4 280 aaKnown RBP17.83■□□□□ 0.45
NEK3-205ENST00000610828 C20orf194Q5TEA3 1177 aa17.83■□□□□ 0.44
NEK3-205ENST00000610828 TXNDC2Q86VQ3 553 aa17.83■□□□□ 0.44
NEK3-205ENST00000610828 TCP11L2Q8N4U5 519 aa17.83■□□□□ 0.44
NEK3-205ENST00000610828 U2AF1L5P0DN76 240 aaPredicted RBP17.82■□□□□ 0.44
NEK3-205ENST00000610828 U2AF1Q01081 240 aaKnown RBP eCLIP17.82■□□□□ 0.44
NEK3-205ENST00000610828 TMEM2Q9UHN6 1383 aa17.82■□□□□ 0.44
NEK3-205ENST00000610828 NLRP1Q9C000 1473 aa17.81■□□□□ 0.44
NEK3-205ENST00000610828 UBR1Q8IWV7 1749 aa17.81■□□□□ 0.44
NEK3-205ENST00000610828 ANKRD26Q9UPS8 1709 aa17.81■□□□□ 0.44
NEK3-205ENST00000610828 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.81■□□□□ 0.44
NEK3-205ENST00000610828 MED14O60244 1454 aa17.81■□□□□ 0.44
NEK3-205ENST00000610828 IQSEC2Q5JU85 1478 aa17.8■□□□□ 0.44
NEK3-205ENST00000610828 WASLO00401 505 aaPredicted RBP17.79■□□□□ 0.44
NEK3-205ENST00000610828 CEBPAP49715 358 aaPredicted RBP17.79■□□□□ 0.44
NEK3-205ENST00000610828 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.79■□□□□ 0.44
NEK3-205ENST00000610828 ATP7BP35670 1465 aa17.78■□□□□ 0.44
NEK3-205ENST00000610828 U2SURPO15042 1029 aaKnown RBP17.77■□□□□ 0.44
NEK3-205ENST00000610828 KIF20BQ96Q89 1820 aa17.77■□□□□ 0.44
NEK3-205ENST00000610828 BCAR3O75815 825 aa17.76■□□□□ 0.43
NEK3-205ENST00000610828 PLPPR3Q6T4P5 718 aa17.76■□□□□ 0.43
NEK3-205ENST00000610828 FAM135BQ49AJ0 1406 aa17.76■□□□□ 0.43
NEK3-205ENST00000610828 TECPR2O15040 1411 aa17.75■□□□□ 0.43
NEK3-205ENST00000610828 PPIP5K1Q6PFW1 1433 aa17.75■□□□□ 0.43
NEK3-205ENST00000610828 KNDC1Q76NI1 1749 aa17.75■□□□□ 0.43
NEK3-205ENST00000610828 PHF23Q9BUL5 403 aaPredicted RBP17.75■□□□□ 0.43
NEK3-205ENST00000610828 COL3A1P02461 1466 aaPredicted RBP17.75■□□□□ 0.43
NEK3-205ENST00000610828 FANCIQ9NVI1 1328 aa17.74■□□□□ 0.43
NEK3-205ENST00000610828 LTKP29376 864 aa17.74■□□□□ 0.43
NEK3-205ENST00000610828 CCDC27Q2M243 656 aa17.74■□□□□ 0.43
NEK3-205ENST00000610828 WDR63Q8IWG1 891 aa17.74■□□□□ 0.43
NEK3-205ENST00000610828 SIRT1Q96EB6 747 aa17.74■□□□□ 0.43
NEK3-205ENST00000610828 CPS1P31327 1500 aa17.73■□□□□ 0.43
NEK3-205ENST00000610828 NUDT16Q96DE0 195 aaKnown RBP17.73■□□□□ 0.43
NEK3-205ENST00000610828 ADAMTS13Q76LX8 1427 aa17.72■□□□□ 0.43
NEK3-205ENST00000610828 DIAPH1O60610 1272 aaKnown RBP17.72■□□□□ 0.43
NEK3-205ENST00000610828 TRHP20396 242 aaPredicted RBP17.72■□□□□ 0.43
NEK3-205ENST00000610828 CPSF1Q10570 1443 aaKnown RBP17.71■□□□□ 0.43
NEK3-205ENST00000610828 NCKAP5LQ9HCH0 1330 aa17.71■□□□□ 0.43
NEK3-205ENST00000610828 ROBO2Q9HCK4 1378 aa17.71■□□□□ 0.43
NEK3-205ENST00000610828 PLEKHG1Q9ULL1 1385 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms