RNA–Protein interactions for RNA: ENST00000606782.1

CTSA-213, Transcript of cathepsin A, humanhuman

TSL 3

Gene CTSA, Length 582 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-213ENST00000606782 DDX17Q92841 729 aaKnown RBP19.69■□□□□ 0.74
CTSA-213ENST00000606782 SOS2Q07890 1332 aaPredicted RBP19.69■□□□□ 0.74
CTSA-213ENST00000606782 TMEM132EQ6IEE7 984 aa19.68■□□□□ 0.74
CTSA-213ENST00000606782 PNPLA6Q8IY17 1366 aa19.68■□□□□ 0.74
CTSA-213ENST00000606782 KNDC1Q76NI1 1749 aa19.68■□□□□ 0.74
CTSA-213ENST00000606782 YTHDC2Q9H6S0 1430 aaKnown RBP19.68■□□□□ 0.74
CTSA-213ENST00000606782 ZNF772Q68DY9 489 aaPredicted RBP19.67■□□□□ 0.74
CTSA-213ENST00000606782 WAPLQ7Z5K2 1190 aa19.67■□□□□ 0.74
CTSA-213ENST00000606782 STK26Q9P289 416 aa19.67■□□□□ 0.74
CTSA-213ENST00000606782 MEX3CQ5U5Q3 659 aaKnown RBP19.66■□□□□ 0.74
CTSA-213ENST00000606782 PLEKHH1Q9ULM0 1364 aa19.63■□□□□ 0.73
CTSA-213ENST00000606782 NUTM2BA6NNL0 878 aaPredicted RBP19.63■□□□□ 0.73
CTSA-213ENST00000606782 NUTM2EB1AL46 878 aaPredicted RBP19.63■□□□□ 0.73
CTSA-213ENST00000606782 CFAP70Q5T0N1 1121 aa19.63■□□□□ 0.73
CTSA-213ENST00000606782 NUTM2AQ8IVF1 878 aaPredicted RBP19.63■□□□□ 0.73
CTSA-213ENST00000606782 DHX57Q6P158 1386 aaKnown RBP19.62■□□□□ 0.73
CTSA-213ENST00000606782 STAC3Q96MF2 364 aa19.62■□□□□ 0.73
CTSA-213ENST00000606782 NPHP3Q7Z494 1330 aa19.6■□□□□ 0.73
CTSA-213ENST00000606782 ESCO1Q5FWF5 840 aa19.6■□□□□ 0.73
CTSA-213ENST00000606782 PXDNQ92626 1479 aa19.58■□□□□ 0.72
CTSA-213ENST00000606782 AFF2P51816 1311 aa19.57■□□□□ 0.72
CTSA-213ENST00000606782 DLC1Q96QB1 1528 aa19.57■□□□□ 0.72
CTSA-213ENST00000606782 FMN2Q9NZ56 1722 aa19.56■□□□□ 0.72
CTSA-213ENST00000606782 ADGRB1O14514 1584 aa19.56■□□□□ 0.72
CTSA-213ENST00000606782 CDK12Q9NYV4 1490 aaPredicted RBP19.55■□□□□ 0.72
CTSA-213ENST00000606782 COL22A1Q8NFW1 1626 aaPredicted RBP19.55■□□□□ 0.72
CTSA-213ENST00000606782 FOXO3O43524 673 aa19.55■□□□□ 0.72
CTSA-213ENST00000606782 RXRBP28702 533 aa19.54■□□□□ 0.72
CTSA-213ENST00000606782 DCAF11Q8TEB1 546 aa19.54■□□□□ 0.72
CTSA-213ENST00000606782 C8orf37Q96NL8 207 aa19.53■□□□□ 0.72
CTSA-213ENST00000606782 PRAM1Q96QH2 718 aa19.53■□□□□ 0.72
CTSA-213ENST00000606782 NUTM2FA1L443 756 aa19.52■□□□□ 0.72
CTSA-213ENST00000606782 KIF1AQ12756 1690 aa19.5■□□□□ 0.71
CTSA-213ENST00000606782 FNBP4Q8N3X1 1017 aaPredicted RBP19.5■□□□□ 0.71
CTSA-213ENST00000606782 NGLY1Q96IV0 654 aa19.5■□□□□ 0.71
CTSA-213ENST00000606782 QTRT2Q9H974 415 aaKnown RBP19.5■□□□□ 0.71
CTSA-213ENST00000606782 KDM2AQ9Y2K7 1162 aa19.5■□□□□ 0.71
CTSA-213ENST00000606782 ADAMTS2O95450 1211 aa19.49■□□□□ 0.71
CTSA-213ENST00000606782 RBM6P78332 1123 aaKnown RBP19.48■□□□□ 0.71
CTSA-213ENST00000606782 XPCQ01831 940 aaPredicted RBP19.48■□□□□ 0.71
CTSA-213ENST00000606782 POGKQ9P215 609 aa19.48■□□□□ 0.71
CTSA-213ENST00000606782 ADGRB2O60241 1585 aa19.48■□□□□ 0.71
CTSA-213ENST00000606782 SPATA31A3Q5VYP0 1347 aa19.48■□□□□ 0.71
CTSA-213ENST00000606782 PHF8Q9UPP1 1060 aa19.47■□□□□ 0.71
CTSA-213ENST00000606782 ANKARQ7Z5J8 1434 aa19.47■□□□□ 0.71
CTSA-213ENST00000606782 SAFB2Q14151 953 aaKnown RBP eCLIP19.46■□□□□ 0.71
CTSA-213ENST00000606782 KRT28Q7Z3Y7 464 aa19.46■□□□□ 0.71
CTSA-213ENST00000606782 PCGF6Q9BYE7 350 aa19.46■□□□□ 0.71
CTSA-213ENST00000606782 TRAK1Q9UPV9 953 aa19.46■□□□□ 0.71
CTSA-213ENST00000606782 RGPD8O14715 1765 aaPredicted RBP19.45■□□□□ 0.7
CTSA-213ENST00000606782 USP21Q9UK80 565 aa19.44■□□□□ 0.7
CTSA-213ENST00000606782 PSME1Q06323 249 aa19.43■□□□□ 0.7
CTSA-213ENST00000606782 UPF1Q92900 1129 aaKnown RBP eCLIP19.43■□□□□ 0.7
CTSA-213ENST00000606782 SBNO1A3KN83 1393 aa19.43■□□□□ 0.7
CTSA-213ENST00000606782 TRPC5Q9UL62 973 aaPredicted RBP19.42■□□□□ 0.7
CTSA-213ENST00000606782 USP32Q8NFA0 1604 aa19.42■□□□□ 0.7
CTSA-213ENST00000606782 MARF1Q9Y4F3 1742 aaKnown RBP19.41■□□□□ 0.7
CTSA-213ENST00000606782 EIF3AQ14152 1382 aaKnown RBP19.41■□□□□ 0.7
CTSA-213ENST00000606782 RGS12O14924 1447 aa19.41■□□□□ 0.7
CTSA-213ENST00000606782 ATRNO75882 1429 aa19.41■□□□□ 0.7
CTSA-213ENST00000606782 BCL9LQ86UU0 1499 aa19.41■□□□□ 0.7
CTSA-213ENST00000606782 WASLO00401 505 aaPredicted RBP19.4■□□□□ 0.7
CTSA-213ENST00000606782 TNS3Q68CZ2 1445 aa19.4■□□□□ 0.7
CTSA-213ENST00000606782 MINK1Q8N4C8 1332 aaPredicted RBP19.39■□□□□ 0.69
CTSA-213ENST00000606782 HIRIP3Q9BW71 556 aaPredicted RBP19.38■□□□□ 0.69
CTSA-213ENST00000606782 PRR36Q9H6K5 1346 aa19.38■□□□□ 0.69
CTSA-213ENST00000606782 KIAA1210Q9ULL0 1709 aa19.38■□□□□ 0.69
CTSA-213ENST00000606782 TULP4Q9NRJ4 1543 aa19.37■□□□□ 0.69
CTSA-213ENST00000606782 ARHGEF28Q8N1W1 1705 aaKnown RBP19.37■□□□□ 0.69
CTSA-213ENST00000606782 SLIT2O94813 1529 aa19.36■□□□□ 0.69
CTSA-213ENST00000606782 ARHGEF10O15013 1369 aa19.36■□□□□ 0.69
CTSA-213ENST00000606782 PMFBP1Q8TBY8 1022 aa19.36■□□□□ 0.69
CTSA-213ENST00000606782 UNC5CLQ8IV45 518 aa19.33■□□□□ 0.68
CTSA-213ENST00000606782 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.33■□□□□ 0.68
CTSA-213ENST00000606782 GJD4Q96KN9 370 aaPredicted RBP19.32■□□□□ 0.68
CTSA-213ENST00000606782 GPRASP1Q5JY77 1395 aa19.32■□□□□ 0.68
CTSA-213ENST00000606782 TRPM3Q9HCF6 1732 aaPredicted RBP19.31■□□□□ 0.68
CTSA-213ENST00000606782 NBPF1Q3BBV0 1214 aa19.31■□□□□ 0.68
CTSA-213ENST00000606782 CABLES1Q8TDN4 633 aa19.31■□□□□ 0.68
CTSA-213ENST00000606782 ATP7BP35670 1465 aa19.3■□□□□ 0.68
CTSA-213ENST00000606782 NUDT16Q96DE0 195 aaKnown RBP19.3■□□□□ 0.68
CTSA-213ENST00000606782 ALS2Q96Q42 1657 aa19.28■□□□□ 0.68
CTSA-213ENST00000606782 CDK19Q9BWU1 502 aa19.28■□□□□ 0.68
CTSA-213ENST00000606782 ABCA3Q99758 1704 aa19.28■□□□□ 0.68
CTSA-213ENST00000606782 LMOD2Q6P5Q4 547 aa19.27■□□□□ 0.68
CTSA-213ENST00000606782 NGDNQ8NEJ9 315 aaKnown RBP19.27■□□□□ 0.68
CTSA-213ENST00000606782 L3MBTL2Q969R5 705 aa19.27■□□□□ 0.68
CTSA-213ENST00000606782 ATAD2Q6PL18 1390 aa19.27■□□□□ 0.68
CTSA-213ENST00000606782 HAP1P54257 671 aaPredicted RBP19.26■□□□□ 0.67
CTSA-213ENST00000606782 RALGAPBQ86X10 1494 aa19.26■□□□□ 0.67
CTSA-213ENST00000606782 ITSN1Q15811 1721 aa19.25■□□□□ 0.67
CTSA-213ENST00000606782 NWD2Q9ULI1 1742 aa19.25■□□□□ 0.67
CTSA-213ENST00000606782 POLR3AO14802 1390 aaPredicted RBP19.25■□□□□ 0.67
CTSA-213ENST00000606782 PLEKHG3A1L390 1219 aa19.25■□□□□ 0.67
CTSA-213ENST00000606782 FAM83GA6ND36 823 aa19.25■□□□□ 0.67
CTSA-213ENST00000606782 VPS72Q15906 364 aa19.25■□□□□ 0.67
CTSA-213ENST00000606782 CCDC61Q9Y6R9 512 aa19.25■□□□□ 0.67
CTSA-213ENST00000606782 GLI3P10071 1580 aa19.24■□□□□ 0.67
CTSA-213ENST00000606782 ONECUT3O60422 494 aaPredicted RBP19.23■□□□□ 0.67
CTSA-213ENST00000606782 SIN3AQ96ST3 1273 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms