RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 POLR3GLQ9BT43 218 aa20.38■□□□□ 0.85
VRK3-212ENST00000596814 CDCA8Q53HL2 280 aa20.37■□□□□ 0.85
VRK3-212ENST00000596814 DDX10Q13206 875 aaKnown RBP20.36■□□□□ 0.85
VRK3-212ENST00000596814 DIEXFQ68CQ4 756 aaKnown RBP20.36■□□□□ 0.85
VRK3-212ENST00000596814 MINK1Q8N4C8 1332 aaPredicted RBP20.35■□□□□ 0.85
VRK3-212ENST00000596814 KCNA6P17658 529 aa20.35■□□□□ 0.85
VRK3-212ENST00000596814 EVC2Q86UK5 1308 aa20.34■□□□□ 0.85
VRK3-212ENST00000596814 ADGRB2O60241 1585 aa20.34■□□□□ 0.85
VRK3-212ENST00000596814 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.33■□□□□ 0.85
VRK3-212ENST00000596814 MYOM1P52179 1685 aa20.32■□□□□ 0.84
VRK3-212ENST00000596814 NKTRP30414 1462 aaKnown RBP20.31■□□□□ 0.84
VRK3-212ENST00000596814 STRCP1A6NGW2 1772 aa20.29■□□□□ 0.84
VRK3-212ENST00000596814 PUS7Q96PZ0 661 aaKnown RBP20.27■□□□□ 0.84
VRK3-212ENST00000596814 NALCNQ8IZF0 1738 aa20.27■□□□□ 0.84
VRK3-212ENST00000596814 SRPK2P78362 688 aaKnown RBP20.26■□□□□ 0.83
VRK3-212ENST00000596814 DMRT2Q9Y5R5 561 aa20.26■□□□□ 0.83
VRK3-212ENST00000596814 ATAD2Q6PL18 1390 aa20.25■□□□□ 0.83
VRK3-212ENST00000596814 WASLO00401 505 aaPredicted RBP20.24■□□□□ 0.83
VRK3-212ENST00000596814 CDK19Q9BWU1 502 aa20.24■□□□□ 0.83
VRK3-212ENST00000596814 CABP2Q9NPB3 220 aa20.24■□□□□ 0.83
VRK3-212ENST00000596814 CDC42BPGQ6DT37 1551 aa20.22■□□□□ 0.83
VRK3-212ENST00000596814 ADGRL3Q9HAR2 1447 aa20.22■□□□□ 0.83
VRK3-212ENST00000596814 AEBP2Q6ZN18 517 aaPredicted RBP20.22■□□□□ 0.83
VRK3-212ENST00000596814 NINLQ9Y2I6 1382 aa20.2■□□□□ 0.83
VRK3-212ENST00000596814 PROSER2Q86WR7 435 aaPredicted RBP20.2■□□□□ 0.82
VRK3-212ENST00000596814 FMN2Q9NZ56 1722 aa20.2■□□□□ 0.82
VRK3-212ENST00000596814 ATP7BP35670 1465 aa20.19■□□□□ 0.82
VRK3-212ENST00000596814 TMC1Q8TDI8 760 aa20.19■□□□□ 0.82
VRK3-212ENST00000596814 RBM33Q96EV2 1170 aaKnown RBP20.18■□□□□ 0.82
VRK3-212ENST00000596814 ZNF335Q9H4Z2 1342 aaPredicted RBP20.18■□□□□ 0.82
VRK3-212ENST00000596814 TOPAZ1Q8N9V7 1692 aa20.18■□□□□ 0.82
VRK3-212ENST00000596814 PANK3Q9H999 370 aa20.17■□□□□ 0.82
VRK3-212ENST00000596814 ITSN1Q15811 1721 aa20.16■□□□□ 0.82
VRK3-212ENST00000596814 USP32Q8NFA0 1604 aa20.16■□□□□ 0.82
VRK3-212ENST00000596814 NCOA3Q9Y6Q9 1424 aa20.16■□□□□ 0.82
VRK3-212ENST00000596814 TMEM94Q12767 1356 aa20.16■□□□□ 0.82
VRK3-212ENST00000596814 C14orf37Q86TY3 774 aa20.16■□□□□ 0.82
VRK3-212ENST00000596814 SLC12A5Q9H2X9 1139 aa20.15■□□□□ 0.82
VRK3-212ENST00000596814 XIRP1Q702N8 1843 aaKnown RBP20.14■□□□□ 0.82
VRK3-212ENST00000596814 NUDT16Q96DE0 195 aaKnown RBP20.14■□□□□ 0.81
VRK3-212ENST00000596814 PPIP5K1Q6PFW1 1433 aa20.14■□□□□ 0.81
VRK3-212ENST00000596814 ANKARQ7Z5J8 1434 aa20.14■□□□□ 0.81
VRK3-212ENST00000596814 ANKRD36BQ8N2N9 1353 aa20.14■□□□□ 0.81
VRK3-212ENST00000596814 PRR36Q9H6K5 1346 aa20.14■□□□□ 0.81
VRK3-212ENST00000596814 LRRC7Q96NW7 1537 aa20.13■□□□□ 0.81
VRK3-212ENST00000596814 RGPD8O14715 1765 aaPredicted RBP20.12■□□□□ 0.81
VRK3-212ENST00000596814 CCDC61Q9Y6R9 512 aa20.12■□□□□ 0.81
VRK3-212ENST00000596814 NUTM2FA1L443 756 aa20.1■□□□□ 0.81
VRK3-212ENST00000596814 ANP32CO43423 234 aa20.1■□□□□ 0.81
VRK3-212ENST00000596814 CABP1Q9NZU7 370 aa20.1■□□□□ 0.81
VRK3-212ENST00000596814 CD163L1Q9NR16 1453 aa20.1■□□□□ 0.81
VRK3-212ENST00000596814 DCCP43146 1447 aa20.1■□□□□ 0.81
VRK3-212ENST00000596814 PER1O15534 1290 aaPredicted RBP20.1■□□□□ 0.81
VRK3-212ENST00000596814 A0A1W2PP64 1363 aa20.1■□□□□ 0.81
VRK3-212ENST00000596814 AKAP12Q02952 1782 aa20.08■□□□□ 0.81
VRK3-212ENST00000596814 NSD3Q9BZ95 1437 aa20.08■□□□□ 0.81
VRK3-212ENST00000596814 C19orf44Q9H6X5 657 aa20.08■□□□□ 0.81
VRK3-212ENST00000596814 TERF2IPQ9NYB0 399 aa20.08■□□□□ 0.81
VRK3-212ENST00000596814 KNSTRNQ9Y448 316 aa20.08■□□□□ 0.81
VRK3-212ENST00000596814 MIER1Q8N108 512 aa20.07■□□□□ 0.8
VRK3-212ENST00000596814 MSH6P52701 1360 aa20.07■□□□□ 0.8
VRK3-212ENST00000596814 HDGFL2Q7Z4V5 671 aaPredicted RBP20.07■□□□□ 0.8
VRK3-212ENST00000596814 MON2Q7Z3U7 1717 aa20.07■□□□□ 0.8
VRK3-212ENST00000596814 CARD14Q9BXL6 1004 aa20.06■□□□□ 0.8
VRK3-212ENST00000596814 CPSF1Q10570 1443 aaKnown RBP20.04■□□□□ 0.8
VRK3-212ENST00000596814 LTBP4Q8N2S1 1624 aa20.04■□□□□ 0.8
VRK3-212ENST00000596814 KTN1Q86UP2 1357 aaKnown RBP20.03■□□□□ 0.8
VRK3-212ENST00000596814 PLEKHG3A1L390 1219 aa20.03■□□□□ 0.8
VRK3-212ENST00000596814 ATF3P18847 181 aa20.03■□□□□ 0.8
VRK3-212ENST00000596814 PRKRIP1Q9H875 184 aaPredicted RBP20.02■□□□□ 0.8
VRK3-212ENST00000596814 NPC1L1Q9UHC9 1359 aa20.02■□□□□ 0.8
VRK3-212ENST00000596814 CNGB1Q14028 1251 aaPredicted RBP20.02■□□□□ 0.79
VRK3-212ENST00000596814 AMER1Q5JTC6 1135 aaPredicted RBP20.02■□□□□ 0.79
VRK3-212ENST00000596814 CADPS2Q86UW7 1296 aa20.02■□□□□ 0.79
VRK3-212ENST00000596814 MST1RQ04912 1400 aa20.01■□□□□ 0.79
VRK3-212ENST00000596814 C1orf167Q5SNV9 1468 aa20■□□□□ 0.79
VRK3-212ENST00000596814 NRKQ7Z2Y5 1582 aa20■□□□□ 0.79
VRK3-212ENST00000596814 ACEP12821 1306 aa20■□□□□ 0.79
VRK3-212ENST00000596814 KIF20BQ96Q89 1820 aa20■□□□□ 0.79
VRK3-212ENST00000596814 POLR3AO14802 1390 aaPredicted RBP20■□□□□ 0.79
VRK3-212ENST00000596814 EDC4Q6P2E9 1401 aaKnown RBP20■□□□□ 0.79
VRK3-212ENST00000596814 KIF1AQ12756 1690 aa20■□□□□ 0.79
VRK3-212ENST00000596814 CC2D1BQ5T0F9 858 aaKnown RBP19.99■□□□□ 0.79
VRK3-212ENST00000596814 PMFBP1Q8TBY8 1022 aa19.99■□□□□ 0.79
VRK3-212ENST00000596814 CGNL1Q0VF96 1302 aa19.99■□□□□ 0.79
VRK3-212ENST00000596814 ZNF692Q9BU19 519 aaPredicted RBP19.99■□□□□ 0.79
VRK3-212ENST00000596814 PARD3Q8TEW0 1356 aa19.98■□□□□ 0.79
VRK3-212ENST00000596814 ANKRD26Q9UPS8 1709 aa19.97■□□□□ 0.79
VRK3-212ENST00000596814 USP6P35125 1406 aa19.97■□□□□ 0.79
VRK3-212ENST00000596814 NSD2O96028 1365 aa19.97■□□□□ 0.79
VRK3-212ENST00000596814 NGDNQ8NEJ9 315 aaKnown RBP19.97■□□□□ 0.79
VRK3-212ENST00000596814 PHF8Q9UPP1 1060 aa19.97■□□□□ 0.79
VRK3-212ENST00000596814 RALBP1Q15311 655 aa19.96■□□□□ 0.79
VRK3-212ENST00000596814 ESCO1Q5FWF5 840 aa19.96■□□□□ 0.79
VRK3-212ENST00000596814 ORAI2Q96SN7 254 aa19.93■□□□□ 0.78
VRK3-212ENST00000596814 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.92■□□□□ 0.78
VRK3-212ENST00000596814 SSH2Q76I76 1423 aa19.92■□□□□ 0.78
VRK3-212ENST00000596814 CCER2I3L3R5 266 aa19.91■□□□□ 0.78
VRK3-212ENST00000596814 MYBBP1AQ9BQG0 1328 aaKnown RBP19.91■□□□□ 0.78
VRK3-212ENST00000596814 TTC21BQ7Z4L5 1316 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms