RNA–Protein interactions for RNA: ENST00000591877.1

VMP1-213, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 791 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-213ENST00000591877 TTBK1Q5TCY1 1321 aaPredicted RBP12.65□□□□□ -0.38
VMP1-213ENST00000591877 SEMA3EO15041 775 aa12.65□□□□□ -0.38
VMP1-213ENST00000591877 APLP1P51693 650 aa12.65□□□□□ -0.38
VMP1-213ENST00000591877 TATDN2Q93075 761 aa12.65□□□□□ -0.38
VMP1-213ENST00000591877 KIAA0556O60303 1618 aa12.65□□□□□ -0.38
VMP1-213ENST00000591877 ZNF775Q96BV0 537 aaPredicted RBP12.64□□□□□ -0.39
VMP1-213ENST00000591877 UHRF1BP1LA0JNW5 1464 aa12.62□□□□□ -0.39
VMP1-213ENST00000591877 NBPF26B4DH59 902 aa12.62□□□□□ -0.39
VMP1-213ENST00000591877 PRIM1P49642 420 aaKnown RBP12.62□□□□□ -0.39
VMP1-213ENST00000591877 BRPF1P55201 1214 aaPredicted RBP12.62□□□□□ -0.39
VMP1-213ENST00000591877 FAM69CQ0P6D2 419 aa12.62□□□□□ -0.39
VMP1-213ENST00000591877 PDIA6Q15084 440 aa12.62□□□□□ -0.39
VMP1-213ENST00000591877 ABCC2Q92887 1545 aa12.62□□□□□ -0.39
VMP1-213ENST00000591877 UACAQ9BZF9 1416 aa12.61□□□□□ -0.39
VMP1-213ENST00000591877 COPS2P61201 443 aa12.59□□□□□ -0.39
VMP1-213ENST00000591877 NUDT18Q6ZVK8 323 aa12.59□□□□□ -0.39
VMP1-213ENST00000591877 TSPOAP1O95153 1857 aa12.58□□□□□ -0.4
VMP1-213ENST00000591877 HDGFP51858 240 aaKnown RBP12.58□□□□□ -0.4
VMP1-213ENST00000591877 KDM5BQ9UGL1 1544 aa12.57□□□□□ -0.4
VMP1-213ENST00000591877 CERKQ8TCT0 537 aa12.57□□□□□ -0.4
VMP1-213ENST00000591877 ZCCHC11Q5TAX3 1644 aaKnown RBP12.57□□□□□ -0.4
VMP1-213ENST00000591877 ASXL2Q76L83 1435 aa12.56□□□□□ -0.4
VMP1-213ENST00000591877 GRXCR2A6NFK2 248 aa12.56□□□□□ -0.4
VMP1-213ENST00000591877 ZMYND10O75800 440 aa12.56□□□□□ -0.4
VMP1-213ENST00000591877 SPDYE16A6NNV3 312 aaPredicted RBP12.55□□□□□ -0.4
VMP1-213ENST00000591877 GGCXP38435 758 aa12.55□□□□□ -0.4
VMP1-213ENST00000591877 CDHR5Q9HBB8 845 aa12.55□□□□□ -0.4
VMP1-213ENST00000591877 GOLGA3Q08378 1498 aa12.54□□□□□ -0.4
VMP1-213ENST00000591877 PLB1Q6P1J6 1458 aa12.54□□□□□ -0.4
VMP1-213ENST00000591877 ABCA8O94911 1581 aa12.54□□□□□ -0.4
VMP1-213ENST00000591877 PPRC1Q5VV67 1664 aaKnown RBP12.54□□□□□ -0.4
VMP1-213ENST00000591877 GLI2P10070 1586 aa12.53□□□□□ -0.4
VMP1-213ENST00000591877 EEA1Q15075 1411 aa12.53□□□□□ -0.4
VMP1-213ENST00000591877 SLC24A3Q9HC58 644 aa12.52□□□□□ -0.41
VMP1-213ENST00000591877 SAMD9Q5K651 1589 aa12.51□□□□□ -0.41
VMP1-213ENST00000591877 SWT1Q5T5J6 900 aaKnown RBP12.5□□□□□ -0.41
VMP1-213ENST00000591877 TRIM67Q6ZTA4 783 aa12.5□□□□□ -0.41
VMP1-213ENST00000591877 EPRSP07814 1512 aaKnown RBP12.5□□□□□ -0.41
VMP1-213ENST00000591877 KDM6BO15054 1643 aa12.49□□□□□ -0.41
VMP1-213ENST00000591877 MAP3K4Q9Y6R4 1608 aa12.49□□□□□ -0.41
VMP1-213ENST00000591877 NEUROD2Q15784 382 aa12.49□□□□□ -0.41
VMP1-213ENST00000591877 FAM9AQ8IZU1 332 aaPredicted RBP12.49□□□□□ -0.41
VMP1-213ENST00000591877 TMUB1Q9BVT8 246 aa12.49□□□□□ -0.41
VMP1-213ENST00000591877 ZPR1O75312 459 aa12.48□□□□□ -0.41
VMP1-213ENST00000591877 BARGINQ6ZT62 677 aa12.48□□□□□ -0.41
VMP1-213ENST00000591877 KIF21BO75037 1637 aa12.47□□□□□ -0.41
VMP1-213ENST00000591877 DAXXQ9UER7 740 aaPredicted RBP12.46□□□□□ -0.41
VMP1-213ENST00000591877 WDR7Q9Y4E6 1490 aa12.46□□□□□ -0.42
VMP1-213ENST00000591877 SLC19A1P41440 591 aa12.45□□□□□ -0.42
VMP1-213ENST00000591877 PKDCCQ504Y2 493 aa12.45□□□□□ -0.42
VMP1-213ENST00000591877 SLF2Q8IX21 1173 aa12.45□□□□□ -0.42
VMP1-213ENST00000591877 NECTIN2Q92692 538 aa12.45□□□□□ -0.42
VMP1-213ENST00000591877 EMID1Q96A84 441 aaPredicted RBP12.45□□□□□ -0.42
VMP1-213ENST00000591877 POTECB2RU33 542 aa12.44□□□□□ -0.42
VMP1-213ENST00000591877 OSBPP22059 807 aa12.44□□□□□ -0.42
VMP1-213ENST00000591877 MYT1Q01538 1121 aa12.44□□□□□ -0.42
VMP1-213ENST00000591877 RNF223E7ERA6 249 aa12.43□□□□□ -0.42
VMP1-213ENST00000591877 C14orf37Q86TY3 774 aa12.43□□□□□ -0.42
VMP1-213ENST00000591877 RBM27Q9P2N5 1060 aaKnown RBP12.43□□□□□ -0.42
VMP1-213ENST00000591877 ATP10BO94823 1461 aa12.42□□□□□ -0.42
VMP1-213ENST00000591877 COL17A1Q9UMD9 1497 aaPredicted RBP12.42□□□□□ -0.42
VMP1-213ENST00000591877 PADI6Q6TGC4 694 aa12.42□□□□□ -0.42
VMP1-213ENST00000591877 RAPGEF6Q8TEU7 1601 aa12.41□□□□□ -0.42
VMP1-213ENST00000591877 CFAP43Q8NDM7 1665 aa12.41□□□□□ -0.42
VMP1-213ENST00000591877 RANGAP1P46060 587 aaPredicted RBP12.4□□□□□ -0.42
VMP1-213ENST00000591877 GPIHBP1Q8IV16 184 aa12.4□□□□□ -0.42
VMP1-213ENST00000591877 PCDHB3Q9Y5E6 796 aa12.4□□□□□ -0.42
VMP1-213ENST00000591877 FHOD3Q2V2M9 1422 aa12.39□□□□□ -0.43
VMP1-213ENST00000591877 ARID3CA6NKF2 412 aa12.39□□□□□ -0.43
VMP1-213ENST00000591877 BLOC1S3Q6QNY0 202 aa12.39□□□□□ -0.43
VMP1-213ENST00000591877 TTC13Q8NBP0 860 aa12.39□□□□□ -0.43
VMP1-213ENST00000591877 AK7Q96M32 723 aa12.39□□□□□ -0.43
VMP1-213ENST00000591877 DGAT1O75907 488 aa12.38□□□□□ -0.43
VMP1-213ENST00000591877 SPRYD7Q5W111 196 aa12.38□□□□□ -0.43
VMP1-213ENST00000591877 ARXQ96QS3 562 aa12.38□□□□□ -0.43
VMP1-213ENST00000591877 TEX14Q8IWB6 1497 aa12.38□□□□□ -0.43
VMP1-213ENST00000591877 PPEF1O14829 653 aaPredicted RBP12.37□□□□□ -0.43
VMP1-213ENST00000591877 TLL1O43897 1013 aa12.37□□□□□ -0.43
VMP1-213ENST00000591877 ZNF598Q86UK7 904 aaKnown RBP12.37□□□□□ -0.43
VMP1-213ENST00000591877 NPDC1Q9NQX5 325 aaPredicted RBP12.37□□□□□ -0.43
VMP1-213ENST00000591877 NUP153P49790 1475 aaKnown RBP12.37□□□□□ -0.43
VMP1-213ENST00000591877 MAGI3Q5TCQ9 1506 aa12.37□□□□□ -0.43
VMP1-213ENST00000591877 MLLT3P42568 568 aaPredicted RBP12.36□□□□□ -0.43
VMP1-213ENST00000591877 SLC4A3P48751 1232 aa12.36□□□□□ -0.43
VMP1-213ENST00000591877 EFCAB5A4FU69 1503 aa12.36□□□□□ -0.43
VMP1-213ENST00000591877 CD109Q6YHK3 1445 aa12.36□□□□□ -0.43
VMP1-213ENST00000591877 RBM26Q5T8P6 1007 aaKnown RBP12.35□□□□□ -0.43
VMP1-213ENST00000591877 FAM187AA6NFU0 413 aa12.34□□□□□ -0.43
VMP1-213ENST00000591877 EYA1Q99502 592 aa12.34□□□□□ -0.43
VMP1-213ENST00000591877 ABCA9Q8IUA7 1624 aa12.33□□□□□ -0.43
VMP1-213ENST00000591877 PRR20EP86478 221 aa12.33□□□□□ -0.44
VMP1-213ENST00000591877 PRR20CP86479 221 aa12.33□□□□□ -0.44
VMP1-213ENST00000591877 PRR20DP86480 221 aa12.33□□□□□ -0.44
VMP1-213ENST00000591877 PRR20BP86481 221 aa12.33□□□□□ -0.44
VMP1-213ENST00000591877 PRR20AP86496 221 aa12.33□□□□□ -0.44
VMP1-213ENST00000591877 LIAT1Q6ZQX7 453 aa12.33□□□□□ -0.44
VMP1-213ENST00000591877 PRR14Q9BWN1 585 aa12.33□□□□□ -0.44
VMP1-213ENST00000591877 TNFRSF10AO00220 468 aa12.32□□□□□ -0.44
VMP1-213ENST00000591877 ZNF697Q5TEC3 545 aa12.32□□□□□ -0.44
VMP1-213ENST00000591877 UBTFP17480 764 aaKnown RBP12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms