RNA–Protein interactions for RNA: ENST00000578692.1

CRLF3-203, Transcript of cytokine receptor like factor 3, humanhuman

TSL 2

Gene CRLF3, Length 1,392 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRLF3-203ENST00000578692 C14orf93Q9H972 538 aaKnown RBP23.39■■□□□ 1.33
CRLF3-203ENST00000578692 TECPR2O15040 1411 aa23.37■■□□□ 1.33
CRLF3-203ENST00000578692 CFAP70Q5T0N1 1121 aa23.35■■□□□ 1.33
CRLF3-203ENST00000578692 ZNF772Q68DY9 489 aaPredicted RBP23.35■■□□□ 1.33
CRLF3-203ENST00000578692 YTHDC2Q9H6S0 1430 aaKnown RBP23.35■■□□□ 1.33
CRLF3-203ENST00000578692 SOS2Q07890 1332 aaPredicted RBP23.33■■□□□ 1.33
CRLF3-203ENST00000578692 ESCO1Q5FWF5 840 aa23.33■■□□□ 1.33
CRLF3-203ENST00000578692 SIRT1Q96EB6 747 aa23.33■■□□□ 1.33
CRLF3-203ENST00000578692 MYOM2P54296 1465 aa23.32■■□□□ 1.32
CRLF3-203ENST00000578692 NRXN1Q9ULB1 1477 aa23.32■■□□□ 1.32
CRLF3-203ENST00000578692 DHX57Q6P158 1386 aaKnown RBP23.32■■□□□ 1.32
CRLF3-203ENST00000578692 PNPLA6Q8IY17 1366 aa23.32■■□□□ 1.32
CRLF3-203ENST00000578692 PLEKHH1Q9ULM0 1364 aa23.32■■□□□ 1.32
CRLF3-203ENST00000578692 KNDC1Q76NI1 1749 aa23.32■■□□□ 1.32
CRLF3-203ENST00000578692 CDC42BPGQ6DT37 1551 aa23.32■■□□□ 1.32
CRLF3-203ENST00000578692 LAMC1P11047 1609 aa23.31■■□□□ 1.32
CRLF3-203ENST00000578692 NUTM2FA1L443 756 aa23.29■■□□□ 1.32
CRLF3-203ENST00000578692 DCAF11Q8TEB1 546 aa23.27■■□□□ 1.32
CRLF3-203ENST00000578692 KDM2AQ9Y2K7 1162 aa23.27■■□□□ 1.32
CRLF3-203ENST00000578692 NPHP3Q7Z494 1330 aa23.27■■□□□ 1.32
CRLF3-203ENST00000578692 FOXO3O43524 673 aa23.26■■□□□ 1.31
CRLF3-203ENST00000578692 AFF2P51816 1311 aa23.25■■□□□ 1.31
CRLF3-203ENST00000578692 C8orf37Q96NL8 207 aa23.25■■□□□ 1.31
CRLF3-203ENST00000578692 STAC3Q96MF2 364 aa23.24■■□□□ 1.31
CRLF3-203ENST00000578692 RXRBP28702 533 aa23.23■■□□□ 1.31
CRLF3-203ENST00000578692 PRAM1Q96QH2 718 aa23.23■■□□□ 1.31
CRLF3-203ENST00000578692 ADAMTS2O95450 1211 aa23.22■■□□□ 1.31
CRLF3-203ENST00000578692 SAFB2Q14151 953 aaKnown RBP eCLIP23.21■■□□□ 1.31
CRLF3-203ENST00000578692 POGKQ9P215 609 aa23.21■■□□□ 1.31
CRLF3-203ENST00000578692 XPCQ01831 940 aaPredicted RBP23.2■■□□□ 1.3
CRLF3-203ENST00000578692 NGLY1Q96IV0 654 aa23.2■■□□□ 1.3
CRLF3-203ENST00000578692 FMN2Q9NZ56 1722 aa23.2■■□□□ 1.3
CRLF3-203ENST00000578692 QTRT2Q9H974 415 aaKnown RBP23.18■■□□□ 1.3
CRLF3-203ENST00000578692 TRAK1Q9UPV9 953 aa23.18■■□□□ 1.3
CRLF3-203ENST00000578692 PXDNQ92626 1479 aa23.18■■□□□ 1.3
CRLF3-203ENST00000578692 DLC1Q96QB1 1528 aa23.16■■□□□ 1.3
CRLF3-203ENST00000578692 ADGRB1O14514 1584 aa23.16■■□□□ 1.3
CRLF3-203ENST00000578692 KRT28Q7Z3Y7 464 aa23.14■■□□□ 1.3
CRLF3-203ENST00000578692 PHF8Q9UPP1 1060 aa23.14■■□□□ 1.3
CRLF3-203ENST00000578692 COL22A1Q8NFW1 1626 aaPredicted RBP23.14■■□□□ 1.3
CRLF3-203ENST00000578692 RGPD8O14715 1765 aaPredicted RBP23.13■■□□□ 1.29
CRLF3-203ENST00000578692 KIF1AQ12756 1690 aa23.12■■□□□ 1.29
CRLF3-203ENST00000578692 RBM6P78332 1123 aaKnown RBP23.12■■□□□ 1.29
CRLF3-203ENST00000578692 SPATA31A3Q5VYP0 1347 aa23.11■■□□□ 1.29
CRLF3-203ENST00000578692 USP21Q9UK80 565 aa23.11■■□□□ 1.29
CRLF3-203ENST00000578692 CDK12Q9NYV4 1490 aaPredicted RBP23.1■■□□□ 1.29
CRLF3-203ENST00000578692 PSME1Q06323 249 aa23.1■■□□□ 1.29
CRLF3-203ENST00000578692 FNBP4Q8N3X1 1017 aaPredicted RBP23.1■■□□□ 1.29
CRLF3-203ENST00000578692 HIRIP3Q9BW71 556 aaPredicted RBP23.1■■□□□ 1.29
CRLF3-203ENST00000578692 MINK1Q8N4C8 1332 aaPredicted RBP23.08■■□□□ 1.29
CRLF3-203ENST00000578692 PMFBP1Q8TBY8 1022 aa23.06■■□□□ 1.28
CRLF3-203ENST00000578692 TRPC5Q9UL62 973 aaPredicted RBP23.06■■□□□ 1.28
CRLF3-203ENST00000578692 ANKARQ7Z5J8 1434 aa23.06■■□□□ 1.28
CRLF3-203ENST00000578692 ADGRB2O60241 1585 aa23.05■■□□□ 1.28
CRLF3-203ENST00000578692 UPF1Q92900 1129 aaKnown RBP eCLIP23.05■■□□□ 1.28
CRLF3-203ENST00000578692 WASLO00401 505 aaPredicted RBP23.04■■□□□ 1.28
CRLF3-203ENST00000578692 USP32Q8NFA0 1604 aa23.03■■□□□ 1.28
CRLF3-203ENST00000578692 MARF1Q9Y4F3 1742 aaKnown RBP23.02■■□□□ 1.28
CRLF3-203ENST00000578692 EIF3AQ14152 1382 aaKnown RBP23.02■■□□□ 1.28
CRLF3-203ENST00000578692 SBNO1A3KN83 1393 aa23.01■■□□□ 1.27
CRLF3-203ENST00000578692 RGS12O14924 1447 aa23.01■■□□□ 1.27
CRLF3-203ENST00000578692 TNS3Q68CZ2 1445 aa23.01■■□□□ 1.27
CRLF3-203ENST00000578692 LMOD2Q6P5Q4 547 aa23.01■■□□□ 1.27
CRLF3-203ENST00000578692 PRR36Q9H6K5 1346 aa23■■□□□ 1.27
CRLF3-203ENST00000578692 HAP1P54257 671 aaPredicted RBP23■■□□□ 1.27
CRLF3-203ENST00000578692 BCL9LQ86UU0 1499 aa22.99■■□□□ 1.27
CRLF3-203ENST00000578692 ATRNO75882 1429 aa22.98■■□□□ 1.27
CRLF3-203ENST00000578692 ARHGEF28Q8N1W1 1705 aaKnown RBP22.98■■□□□ 1.27
CRLF3-203ENST00000578692 CABLES1Q8TDN4 633 aa22.98■■□□□ 1.27
CRLF3-203ENST00000578692 TULP4Q9NRJ4 1543 aa22.97■■□□□ 1.27
CRLF3-203ENST00000578692 PLEKHG5O94827 1062 aa22.97■■□□□ 1.27
CRLF3-203ENST00000578692 NBPF1Q3BBV0 1214 aa22.97■■□□□ 1.27
CRLF3-203ENST00000578692 KIAA1210Q9ULL0 1709 aa22.97■■□□□ 1.27
CRLF3-203ENST00000578692 ARHGEF10O15013 1369 aa22.97■■□□□ 1.27
CRLF3-203ENST00000578692 GPRASP1Q5JY77 1395 aa22.96■■□□□ 1.27
CRLF3-203ENST00000578692 NGDNQ8NEJ9 315 aaKnown RBP22.95■■□□□ 1.26
CRLF3-203ENST00000578692 UNC5CLQ8IV45 518 aa22.94■■□□□ 1.26
CRLF3-203ENST00000578692 NUDT16Q96DE0 195 aaKnown RBP22.94■■□□□ 1.26
CRLF3-203ENST00000578692 GJD4Q96KN9 370 aaPredicted RBP22.94■■□□□ 1.26
CRLF3-203ENST00000578692 SIN3AQ96ST3 1273 aa22.93■■□□□ 1.26
CRLF3-203ENST00000578692 CDK19Q9BWU1 502 aa22.93■■□□□ 1.26
CRLF3-203ENST00000578692 SLIT2O94813 1529 aa22.92■■□□□ 1.26
CRLF3-203ENST00000578692 L3MBTL2Q969R5 705 aa22.92■■□□□ 1.26
CRLF3-203ENST00000578692 TRPM3Q9HCF6 1732 aaPredicted RBP22.89■■□□□ 1.26
CRLF3-203ENST00000578692 PAK3O75914 559 aaPredicted RBP22.89■■□□□ 1.25
CRLF3-203ENST00000578692 NEUROD1Q13562 356 aa22.89■■□□□ 1.25
CRLF3-203ENST00000578692 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.88■■□□□ 1.25
CRLF3-203ENST00000578692 ATP7BP35670 1465 aa22.88■■□□□ 1.25
CRLF3-203ENST00000578692 FAM83GA6ND36 823 aa22.87■■□□□ 1.25
CRLF3-203ENST00000578692 ITSN1Q15811 1721 aa22.86■■□□□ 1.25
CRLF3-203ENST00000578692 CCDC61Q9Y6R9 512 aa22.86■■□□□ 1.25
CRLF3-203ENST00000578692 ALS2Q96Q42 1657 aa22.85■■□□□ 1.25
CRLF3-203ENST00000578692 ATAD2Q6PL18 1390 aa22.85■■□□□ 1.25
CRLF3-203ENST00000578692 ABCA3Q99758 1704 aa22.85■■□□□ 1.25
CRLF3-203ENST00000578692 CENPJQ9HC77 1338 aaPredicted RBP22.84■■□□□ 1.25
CRLF3-203ENST00000578692 RALGAPBQ86X10 1494 aa22.84■■□□□ 1.25
CRLF3-203ENST00000578692 VPS72Q15906 364 aa22.83■■□□□ 1.25
CRLF3-203ENST00000578692 PLEKHG3A1L390 1219 aa22.82■■□□□ 1.24
CRLF3-203ENST00000578692 NBPF8Q3BBV2 869 aa22.82■■□□□ 1.24
CRLF3-203ENST00000578692 ACEP12821 1306 aa22.82■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms