RNA–Protein interactions for RNA: ENST00000576613.5

CTDNEP1-212, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 3

Gene CTDNEP1, Length 606 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-212ENST00000576613 TRPC5Q9UL62 973 aaPredicted RBP17.58■□□□□ 0.4
CTDNEP1-212ENST00000576613 NPHP3Q7Z494 1330 aa17.56■□□□□ 0.4
CTDNEP1-212ENST00000576613 FNBP4Q8N3X1 1017 aaPredicted RBP17.56■□□□□ 0.4
CTDNEP1-212ENST00000576613 SLC4A1APQ9BWU0 796 aaKnown RBP17.56■□□□□ 0.4
CTDNEP1-212ENST00000576613 FOXD1Q16676 465 aa17.54■□□□□ 0.4
CTDNEP1-212ENST00000576613 MARF1Q9Y4F3 1742 aaKnown RBP17.54■□□□□ 0.4
CTDNEP1-212ENST00000576613 MYOM2P54296 1465 aa17.54■□□□□ 0.4
CTDNEP1-212ENST00000576613 ESCO1Q5FWF5 840 aa17.53■□□□□ 0.4
CTDNEP1-212ENST00000576613 ATRNO75882 1429 aa17.53■□□□□ 0.4
CTDNEP1-212ENST00000576613 PXDNQ92626 1479 aa17.52■□□□□ 0.4
CTDNEP1-212ENST00000576613 LRPPRCP42704 1394 aaKnown RBP17.52■□□□□ 0.39
CTDNEP1-212ENST00000576613 SRCAPQ6ZRS2 3230 aa17.5■□□□□ 0.39
CTDNEP1-212ENST00000576613 EP400Q96L91 3159 aa17.5■□□□□ 0.39
CTDNEP1-212ENST00000576613 CCDC144AA2RUR9 1427 aa17.49■□□□□ 0.39
CTDNEP1-212ENST00000576613 TECPR2O15040 1411 aa17.49■□□□□ 0.39
CTDNEP1-212ENST00000576613 KNDC1Q76NI1 1749 aa17.48■□□□□ 0.39
CTDNEP1-212ENST00000576613 IFT172Q9UG01 1749 aa17.48■□□□□ 0.39
CTDNEP1-212ENST00000576613 FOXO3O43524 673 aa17.48■□□□□ 0.39
CTDNEP1-212ENST00000576613 BCL9LQ86UU0 1499 aa17.48■□□□□ 0.39
CTDNEP1-212ENST00000576613 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.47■□□□□ 0.39
CTDNEP1-212ENST00000576613 ANKRD30BQ9BXX2 1392 aa17.47■□□□□ 0.39
CTDNEP1-212ENST00000576613 KIF1AQ12756 1690 aa17.47■□□□□ 0.39
CTDNEP1-212ENST00000576613 XPCQ01831 940 aaPredicted RBP17.46■□□□□ 0.39
CTDNEP1-212ENST00000576613 CCDC125Q86Z20 511 aa17.46■□□□□ 0.39
CTDNEP1-212ENST00000576613 STK26Q9P289 416 aa17.46■□□□□ 0.39
CTDNEP1-212ENST00000576613 ZRANB1Q9UGI0 708 aa17.46■□□□□ 0.39
CTDNEP1-212ENST00000576613 ADGRF5Q8IZF2 1346 aa17.46■□□□□ 0.38
CTDNEP1-212ENST00000576613 FMN2Q9NZ56 1722 aa17.45■□□□□ 0.38
CTDNEP1-212ENST00000576613 GJD4Q96KN9 370 aaPredicted RBP17.44■□□□□ 0.38
CTDNEP1-212ENST00000576613 SPATA31E1Q6ZUB1 1445 aa17.44■□□□□ 0.38
CTDNEP1-212ENST00000576613 ABCC11Q96J66 1382 aa17.43■□□□□ 0.38
CTDNEP1-212ENST00000576613 NUTM2FA1L443 756 aa17.43■□□□□ 0.38
CTDNEP1-212ENST00000576613 RGL3Q3MIN7 710 aa17.43■□□□□ 0.38
CTDNEP1-212ENST00000576613 WAPLQ7Z5K2 1190 aa17.43■□□□□ 0.38
CTDNEP1-212ENST00000576613 PIK3C2GO75747 1445 aa17.42■□□□□ 0.38
CTDNEP1-212ENST00000576613 USP32Q8NFA0 1604 aa17.41■□□□□ 0.38
CTDNEP1-212ENST00000576613 SPATA31A3Q5VYP0 1347 aa17.41■□□□□ 0.38
CTDNEP1-212ENST00000576613 TMEM132EQ6IEE7 984 aa17.4■□□□□ 0.38
CTDNEP1-212ENST00000576613 UNC5CLQ8IV45 518 aa17.4■□□□□ 0.38
CTDNEP1-212ENST00000576613 SLIT2O94813 1529 aa17.4■□□□□ 0.38
CTDNEP1-212ENST00000576613 PLEKHH1Q9ULM0 1364 aa17.4■□□□□ 0.38
CTDNEP1-212ENST00000576613 YTHDC2Q9H6S0 1430 aaKnown RBP17.39■□□□□ 0.38
CTDNEP1-212ENST00000576613 RALGAPBQ86X10 1494 aa17.39■□□□□ 0.37
CTDNEP1-212ENST00000576613 GLI3P10071 1580 aa17.39■□□□□ 0.37
CTDNEP1-212ENST00000576613 HAP1P54257 671 aaPredicted RBP17.38■□□□□ 0.37
CTDNEP1-212ENST00000576613 KRT28Q7Z3Y7 464 aa17.37■□□□□ 0.37
CTDNEP1-212ENST00000576613 MPHOSPH9Q99550 1183 aa17.37■□□□□ 0.37
CTDNEP1-212ENST00000576613 BLMP54132 1417 aaPredicted RBP17.37■□□□□ 0.37
CTDNEP1-212ENST00000576613 SIRT1Q96EB6 747 aa17.36■□□□□ 0.37
CTDNEP1-212ENST00000576613 TNS3Q68CZ2 1445 aa17.36■□□□□ 0.37
CTDNEP1-212ENST00000576613 NWD2Q9ULI1 1742 aa17.35■□□□□ 0.37
CTDNEP1-212ENST00000576613 RGPD8O14715 1765 aaPredicted RBP17.35■□□□□ 0.37
CTDNEP1-212ENST00000576613 PSME1Q06323 249 aa17.35■□□□□ 0.37
CTDNEP1-212ENST00000576613 PLCH1Q4KWH8 1693 aa17.35■□□□□ 0.37
CTDNEP1-212ENST00000576613 BRWD3Q6RI45 1802 aa17.35■□□□□ 0.37
CTDNEP1-212ENST00000576613 PHF8Q9UPP1 1060 aa17.34■□□□□ 0.37
CTDNEP1-212ENST00000576613 ABCA3Q99758 1704 aa17.33■□□□□ 0.37
CTDNEP1-212ENST00000576613 NRXN1Q9ULB1 1477 aa17.32■□□□□ 0.36
CTDNEP1-212ENST00000576613 ARHGEF10O15013 1369 aa17.32■□□□□ 0.36
CTDNEP1-212ENST00000576613 DHX57Q6P158 1386 aaKnown RBP17.32■□□□□ 0.36
CTDNEP1-212ENST00000576613 ACIN1Q9UKV3 1341 aaKnown RBP17.32■□□□□ 0.36
CTDNEP1-212ENST00000576613 SF3B2Q13435 895 aaKnown RBP17.32■□□□□ 0.36
CTDNEP1-212ENST00000576613 SBNO1A3KN83 1393 aa17.31■□□□□ 0.36
CTDNEP1-212ENST00000576613 VPS72Q15906 364 aa17.31■□□□□ 0.36
CTDNEP1-212ENST00000576613 C14orf93Q9H972 538 aaKnown RBP17.31■□□□□ 0.36
CTDNEP1-212ENST00000576613 CCDC9Q9Y3X0 531 aaKnown RBP17.3■□□□□ 0.36
CTDNEP1-212ENST00000576613 LMOD2Q6P5Q4 547 aa17.29■□□□□ 0.36
CTDNEP1-212ENST00000576613 SEPT12Q8IYM1 358 aa17.29■□□□□ 0.36
CTDNEP1-212ENST00000576613 CABLES1Q8TDN4 633 aa17.29■□□□□ 0.36
CTDNEP1-212ENST00000576613 PRAM1Q96QH2 718 aa17.28■□□□□ 0.36
CTDNEP1-212ENST00000576613 ANKARQ7Z5J8 1434 aa17.28■□□□□ 0.36
CTDNEP1-212ENST00000576613 DLC1Q96QB1 1528 aa17.27■□□□□ 0.36
CTDNEP1-212ENST00000576613 PLEKHG5O94827 1062 aa17.27■□□□□ 0.36
CTDNEP1-212ENST00000576613 CFAP70Q5T0N1 1121 aa17.27■□□□□ 0.36
CTDNEP1-212ENST00000576613 ADGRB2O60241 1585 aa17.27■□□□□ 0.35
CTDNEP1-212ENST00000576613 ONECUT3O60422 494 aaPredicted RBP17.26■□□□□ 0.35
CTDNEP1-212ENST00000576613 SAFB2Q14151 953 aaKnown RBP eCLIP17.26■□□□□ 0.35
CTDNEP1-212ENST00000576613 KRT27Q7Z3Y8 459 aa17.26■□□□□ 0.35
CTDNEP1-212ENST00000576613 DEFB132Q7Z7B7 95 aa17.26■□□□□ 0.35
CTDNEP1-212ENST00000576613 POGKQ9P215 609 aa17.26■□□□□ 0.35
CTDNEP1-212ENST00000576613 A0A0G2JS52 829 aa17.24■□□□□ 0.35
CTDNEP1-212ENST00000576613 MYT1Q01538 1121 aa17.24■□□□□ 0.35
CTDNEP1-212ENST00000576613 EIF3AQ14152 1382 aaKnown RBP17.24■□□□□ 0.35
CTDNEP1-212ENST00000576613 NRAPQ86VF7 1730 aa17.24■□□□□ 0.35
CTDNEP1-212ENST00000576613 TRPM3Q9HCF6 1732 aaPredicted RBP17.24■□□□□ 0.35
CTDNEP1-212ENST00000576613 LRP5O75197 1615 aa17.23■□□□□ 0.35
CTDNEP1-212ENST00000576613 PMFBP1Q8TBY8 1022 aa17.23■□□□□ 0.35
CTDNEP1-212ENST00000576613 COL14A1Q05707 1796 aaKnown RBP17.23■□□□□ 0.35
CTDNEP1-212ENST00000576613 GPRASP1Q5JY77 1395 aa17.22■□□□□ 0.35
CTDNEP1-212ENST00000576613 ALS2Q96Q42 1657 aa17.22■□□□□ 0.35
CTDNEP1-212ENST00000576613 FAM83GA6ND36 823 aa17.21■□□□□ 0.35
CTDNEP1-212ENST00000576613 ADGRB1O14514 1584 aa17.2■□□□□ 0.34
CTDNEP1-212ENST00000576613 BAG6P46379 1132 aa17.2■□□□□ 0.34
CTDNEP1-212ENST00000576613 BTG4Q9NY30 223 aa17.19■□□□□ 0.34
CTDNEP1-212ENST00000576613 TULP4Q9NRJ4 1543 aa17.19■□□□□ 0.34
CTDNEP1-212ENST00000576613 RGPD1P0DJD0 1748 aa17.18■□□□□ 0.34
CTDNEP1-212ENST00000576613 FAM98CQ17RN3 349 aaKnown RBP17.18■□□□□ 0.34
CTDNEP1-212ENST00000576613 HIRIP3Q9BW71 556 aaPredicted RBP17.17■□□□□ 0.34
CTDNEP1-212ENST00000576613 TRAK1Q9UPV9 953 aa17.17■□□□□ 0.34
CTDNEP1-212ENST00000576613 CRYBG1Q9Y4K1 1723 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms