RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 NSD3Q9BZ95 1437 aa13.28□□□□□ -0.28
VPS53-220ENST00000576149 SLFN5Q08AF3 891 aa13.27□□□□□ -0.29
VPS53-220ENST00000576149 CYB5RLQ6IPT4 315 aa13.27□□□□□ -0.29
VPS53-220ENST00000576149 CCDC146Q8IYE0 955 aa13.27□□□□□ -0.29
VPS53-220ENST00000576149 NUTM2DQ5VT03 806 aaPredicted RBP13.27□□□□□ -0.29
VPS53-220ENST00000576149 TRMT2AQ8IZ69 625 aaKnown RBP13.27□□□□□ -0.29
VPS53-220ENST00000576149 APAF1O14727 1248 aa13.26□□□□□ -0.29
VPS53-220ENST00000576149 ARHGEF28Q8N1W1 1705 aaKnown RBP13.26□□□□□ -0.29
VPS53-220ENST00000576149 NGEFQ8N5V2 710 aa13.25□□□□□ -0.29
VPS53-220ENST00000576149 USP32Q8NFA0 1604 aa13.25□□□□□ -0.29
VPS53-220ENST00000576149 EVC2Q86UK5 1308 aa13.25□□□□□ -0.29
VPS53-220ENST00000576149 MORC1Q86VD1 984 aa13.25□□□□□ -0.29
VPS53-220ENST00000576149 CRBNQ96SW2 442 aa13.25□□□□□ -0.29
VPS53-220ENST00000576149 ADRA2BP18089 450 aa13.24□□□□□ -0.29
VPS53-220ENST00000576149 TULP4Q9NRJ4 1543 aa13.24□□□□□ -0.29
VPS53-220ENST00000576149 PREX1Q8TCU6 1659 aa13.24□□□□□ -0.29
VPS53-220ENST00000576149 TMEM131LA2VDJ0 1609 aa13.23□□□□□ -0.29
VPS53-220ENST00000576149 TCERG1O14776 1098 aaKnown RBP13.22□□□□□ -0.29
VPS53-220ENST00000576149 C20orf194Q5TEA3 1177 aa13.22□□□□□ -0.29
VPS53-220ENST00000576149 CGNL1Q0VF96 1302 aa13.22□□□□□ -0.29
VPS53-220ENST00000576149 FAM69CQ0P6D2 419 aa13.22□□□□□ -0.29
VPS53-220ENST00000576149 SPINK5Q9NQ38 1064 aaPredicted RBP13.22□□□□□ -0.29
VPS53-220ENST00000576149 ANKRD36BQ8N2N9 1353 aa13.22□□□□□ -0.29
VPS53-220ENST00000576149 E9PSI1 815 aa13.21□□□□□ -0.29
VPS53-220ENST00000576149 DIP2BQ9P265 1576 aa13.21□□□□□ -0.29
VPS53-220ENST00000576149 SHPRHQ149N8 1683 aa13.2□□□□□ -0.3
VPS53-220ENST00000576149 NKTRP30414 1462 aaKnown RBP13.2□□□□□ -0.3
VPS53-220ENST00000576149 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.2□□□□□ -0.3
VPS53-220ENST00000576149 NSD2O96028 1365 aa13.2□□□□□ -0.3
VPS53-220ENST00000576149 MYO5BQ9ULV0 1848 aa13.19□□□□□ -0.3
VPS53-220ENST00000576149 TNNT2P45379 298 aaPredicted RBP13.19□□□□□ -0.3
VPS53-220ENST00000576149 CABP2Q9NPB3 220 aa13.19□□□□□ -0.3
VPS53-220ENST00000576149 RIMBP3CA6NJZ7 1639 aa13.19□□□□□ -0.3
VPS53-220ENST00000576149 RIMBP3BA6NNM3 1639 aa13.19□□□□□ -0.3
VPS53-220ENST00000576149 RIMBP3Q9UFD9 1639 aa13.19□□□□□ -0.3
VPS53-220ENST00000576149 FBXO31Q5XUX0 539 aaPredicted RBP13.19□□□□□ -0.3
VPS53-220ENST00000576149 REREQ9P2R6 1566 aa13.19□□□□□ -0.3
VPS53-220ENST00000576149 MS4A1P11836 297 aa13.18□□□□□ -0.3
VPS53-220ENST00000576149 NINLQ9Y2I6 1382 aa13.18□□□□□ -0.3
VPS53-220ENST00000576149 MTHFSP49914 203 aa13.18□□□□□ -0.3
VPS53-220ENST00000576149 WWC1Q8IX03 1113 aa13.18□□□□□ -0.3
VPS53-220ENST00000576149 STK26Q9P289 416 aa13.18□□□□□ -0.3
VPS53-220ENST00000576149 PPP6R1Q9UPN7 881 aa13.18□□□□□ -0.3
VPS53-220ENST00000576149 DMRT2Q9Y5R5 561 aa13.18□□□□□ -0.3
VPS53-220ENST00000576149 PTPRMP28827 1452 aa13.18□□□□□ -0.3
VPS53-220ENST00000576149 SAFB2Q14151 953 aaKnown RBP eCLIP13.17□□□□□ -0.3
VPS53-220ENST00000576149 AGLP35573 1532 aa13.17□□□□□ -0.3
VPS53-220ENST00000576149 RUNDC1Q96C34 613 aa13.17□□□□□ -0.3
VPS53-220ENST00000576149 YTHDC2Q9H6S0 1430 aaKnown RBP13.16□□□□□ -0.3
VPS53-220ENST00000576149 CFAP53Q96M91 514 aa13.16□□□□□ -0.3
VPS53-220ENST00000576149 ANP32AP39687 249 aaKnown RBP13.15□□□□□ -0.3
VPS53-220ENST00000576149 KDM2BQ8NHM5 1336 aa13.15□□□□□ -0.3
VPS53-220ENST00000576149 ABCC11Q96J66 1382 aa13.15□□□□□ -0.3
VPS53-220ENST00000576149 IQSEC2Q5JU85 1478 aa13.15□□□□□ -0.3
VPS53-220ENST00000576149 SRPK2P78362 688 aaKnown RBP13.14□□□□□ -0.31
VPS53-220ENST00000576149 PRAM1Q96QH2 718 aa13.14□□□□□ -0.31
VPS53-220ENST00000576149 A0A1W2PP64 1363 aa13.14□□□□□ -0.31
VPS53-220ENST00000576149 PDE4AP27815 886 aa13.14□□□□□ -0.31
VPS53-220ENST00000576149 ATAD2Q6PL18 1390 aa13.14□□□□□ -0.31
VPS53-220ENST00000576149 ALKQ9UM73 1620 aa13.14□□□□□ -0.31
VPS53-220ENST00000576149 BCAR3O75815 825 aa13.13□□□□□ -0.31
VPS53-220ENST00000576149 TPRNQ4KMQ1 711 aa13.13□□□□□ -0.31
VPS53-220ENST00000576149 TCP11L2Q8N4U5 519 aa13.13□□□□□ -0.31
VPS53-220ENST00000576149 BACH2Q9BYV9 841 aa13.13□□□□□ -0.31
VPS53-220ENST00000576149 CENPQQ7L2Z9 268 aaPredicted RBP13.13□□□□□ -0.31
VPS53-220ENST00000576149 IPO9Q96P70 1041 aaKnown RBP13.13□□□□□ -0.31
VPS53-220ENST00000576149 NOP58Q9Y2X3 529 aaKnown RBP13.13□□□□□ -0.31
VPS53-220ENST00000576149 TSPOAP1O95153 1857 aa13.12□□□□□ -0.31
VPS53-220ENST00000576149 POGKQ9P215 609 aa13.12□□□□□ -0.31
VPS53-220ENST00000576149 CLTCQ00610 1675 aaKnown RBP13.12□□□□□ -0.31
VPS53-220ENST00000576149 MINK1Q8N4C8 1332 aaPredicted RBP13.12□□□□□ -0.31
VPS53-220ENST00000576149 CCDC27Q2M243 656 aa13.12□□□□□ -0.31
VPS53-220ENST00000576149 STAG3Q9UJ98 1225 aa13.12□□□□□ -0.31
VPS53-220ENST00000576149 WDR63Q8IWG1 891 aa13.11□□□□□ -0.31
VPS53-220ENST00000576149 TERF2IPQ9NYB0 399 aa13.11□□□□□ -0.31
VPS53-220ENST00000576149 SPATA31D1Q6ZQQ2 1576 aa13.11□□□□□ -0.31
VPS53-220ENST00000576149 RRP7AQ9Y3A4 280 aaKnown RBP13.11□□□□□ -0.31
VPS53-220ENST00000576149 A2ML1A8K2U0 1454 aa13.11□□□□□ -0.31
VPS53-220ENST00000576149 CD163L1Q9NR16 1453 aa13.11□□□□□ -0.31
VPS53-220ENST00000576149 NEUROD2Q15784 382 aa13.1□□□□□ -0.31
VPS53-220ENST00000576149 MED14O60244 1454 aa13.1□□□□□ -0.31
VPS53-220ENST00000576149 ARHGEF40Q8TER5 1519 aa13.1□□□□□ -0.31
VPS53-220ENST00000576149 FYB1O15117 783 aa13.09□□□□□ -0.31
VPS53-220ENST00000576149 PAK3O75914 559 aaPredicted RBP13.09□□□□□ -0.31
VPS53-220ENST00000576149 PDE3AQ14432 1141 aa13.09□□□□□ -0.31
VPS53-220ENST00000576149 SKAP1Q86WV1 359 aa13.09□□□□□ -0.31
VPS53-220ENST00000576149 GGNBP2Q9H3C7 697 aa13.09□□□□□ -0.31
VPS53-220ENST00000576149 NLRP1Q9C000 1473 aa13.08□□□□□ -0.31
VPS53-220ENST00000576149 U2AF1L5P0DN76 240 aaPredicted RBP13.08□□□□□ -0.32
VPS53-220ENST00000576149 U2AF1Q01081 240 aaKnown RBP eCLIP13.08□□□□□ -0.32
VPS53-220ENST00000576149 CDK19Q9BWU1 502 aa13.08□□□□□ -0.32
VPS53-220ENST00000576149 RIMS2Q9UQ26 1411 aa13.07□□□□□ -0.32
VPS53-220ENST00000576149 DLC1Q96QB1 1528 aa13.07□□□□□ -0.32
VPS53-220ENST00000576149 ADGRB2O60241 1585 aa13.07□□□□□ -0.32
VPS53-220ENST00000576149 COL3A1P02461 1466 aaPredicted RBP13.06□□□□□ -0.32
VPS53-220ENST00000576149 ANKRD26Q9UPS8 1709 aa13.06□□□□□ -0.32
VPS53-220ENST00000576149 HDGFL2Q7Z4V5 671 aaPredicted RBP13.06□□□□□ -0.32
VPS53-220ENST00000576149 RARSP54136 660 aaKnown RBP13.05□□□□□ -0.32
VPS53-220ENST00000576149 ZBTB47Q9UFB7 747 aaPredicted RBP13.05□□□□□ -0.32
VPS53-220ENST00000576149 MLECQ14165 292 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms