RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 STRCQ7RTU9 1775 aa17.81■□□□□ 0.44
CLK3-214ENST00000564096 EVC2Q86UK5 1308 aa17.8■□□□□ 0.44
CLK3-214ENST00000564096 ADGRB2O60241 1585 aa17.8■□□□□ 0.44
CLK3-214ENST00000564096 CHD2O14647 1828 aaKnown RBP17.79■□□□□ 0.44
CLK3-214ENST00000564096 TULP4Q9NRJ4 1543 aa17.78■□□□□ 0.44
CLK3-214ENST00000564096 KCNA6P17658 529 aa17.78■□□□□ 0.44
CLK3-214ENST00000564096 SAFB2Q14151 953 aaKnown RBP eCLIP17.78■□□□□ 0.44
CLK3-214ENST00000564096 POLR3GLQ9BT43 218 aa17.78■□□□□ 0.44
CLK3-214ENST00000564096 PLEKHH1Q9ULM0 1364 aa17.78■□□□□ 0.44
CLK3-214ENST00000564096 MINK1Q8N4C8 1332 aaPredicted RBP17.76■□□□□ 0.43
CLK3-214ENST00000564096 WAPLQ7Z5K2 1190 aa17.75■□□□□ 0.43
CLK3-214ENST00000564096 ATAD2Q6PL18 1390 aa17.75■□□□□ 0.43
CLK3-214ENST00000564096 C11orf95C9JLR9 678 aaPredicted RBP17.74■□□□□ 0.43
CLK3-214ENST00000564096 PUS7Q96PZ0 661 aaKnown RBP17.74■□□□□ 0.43
CLK3-214ENST00000564096 NINLQ9Y2I6 1382 aa17.74■□□□□ 0.43
CLK3-214ENST00000564096 CDC42BPGQ6DT37 1551 aa17.72■□□□□ 0.43
CLK3-214ENST00000564096 SRPK2P78362 688 aaKnown RBP17.72■□□□□ 0.43
CLK3-214ENST00000564096 ADGRL3Q9HAR2 1447 aa17.72■□□□□ 0.43
CLK3-214ENST00000564096 DDX10Q13206 875 aaKnown RBP17.7■□□□□ 0.42
CLK3-214ENST00000564096 DIEXFQ68CQ4 756 aaKnown RBP17.7■□□□□ 0.42
CLK3-214ENST00000564096 NCOA3Q9Y6Q9 1424 aa17.7■□□□□ 0.42
CLK3-214ENST00000564096 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.69■□□□□ 0.42
CLK3-214ENST00000564096 WASLO00401 505 aaPredicted RBP17.68■□□□□ 0.42
CLK3-214ENST00000564096 C14orf37Q86TY3 774 aa17.68■□□□□ 0.42
CLK3-214ENST00000564096 MYOM1P52179 1685 aa17.67■□□□□ 0.42
CLK3-214ENST00000564096 NALCNQ8IZF0 1738 aa17.67■□□□□ 0.42
CLK3-214ENST00000564096 PROSER2Q86WR7 435 aaPredicted RBP17.67■□□□□ 0.42
CLK3-214ENST00000564096 CDK19Q9BWU1 502 aa17.67■□□□□ 0.42
CLK3-214ENST00000564096 CABP2Q9NPB3 220 aa17.66■□□□□ 0.42
CLK3-214ENST00000564096 ANKARQ7Z5J8 1434 aa17.65■□□□□ 0.42
CLK3-214ENST00000564096 TMEM94Q12767 1356 aa17.65■□□□□ 0.42
CLK3-214ENST00000564096 DCCP43146 1447 aa17.64■□□□□ 0.42
CLK3-214ENST00000564096 ATP7BP35670 1465 aa17.64■□□□□ 0.41
CLK3-214ENST00000564096 STRCP1A6NGW2 1772 aa17.63■□□□□ 0.41
CLK3-214ENST00000564096 TMC1Q8TDI8 760 aa17.63■□□□□ 0.41
CLK3-214ENST00000564096 ZNF335Q9H4Z2 1342 aaPredicted RBP17.63■□□□□ 0.41
CLK3-214ENST00000564096 FMN2Q9NZ56 1722 aa17.62■□□□□ 0.41
CLK3-214ENST00000564096 ITSN1Q15811 1721 aa17.61■□□□□ 0.41
CLK3-214ENST00000564096 MSH6P52701 1360 aa17.61■□□□□ 0.41
CLK3-214ENST00000564096 ANKRD36BQ8N2N9 1353 aa17.61■□□□□ 0.41
CLK3-214ENST00000564096 PPIP5K1Q6PFW1 1433 aa17.61■□□□□ 0.41
CLK3-214ENST00000564096 LRRC7Q96NW7 1537 aa17.61■□□□□ 0.41
CLK3-214ENST00000564096 TOPAZ1Q8N9V7 1692 aa17.61■□□□□ 0.41
CLK3-214ENST00000564096 TERF2IPQ9NYB0 399 aa17.59■□□□□ 0.41
CLK3-214ENST00000564096 HDGFL2Q7Z4V5 671 aaPredicted RBP17.58■□□□□ 0.4
CLK3-214ENST00000564096 NUDT16Q96DE0 195 aaKnown RBP17.58■□□□□ 0.4
CLK3-214ENST00000564096 C19orf44Q9H6X5 657 aa17.58■□□□□ 0.4
CLK3-214ENST00000564096 PANK3Q9H999 370 aa17.58■□□□□ 0.4
CLK3-214ENST00000564096 CCDC61Q9Y6R9 512 aa17.58■□□□□ 0.4
CLK3-214ENST00000564096 ANP32CO43423 234 aa17.57■□□□□ 0.4
CLK3-214ENST00000564096 ATF3P18847 181 aa17.56■□□□□ 0.4
CLK3-214ENST00000564096 RBM33Q96EV2 1170 aaKnown RBP17.56■□□□□ 0.4
CLK3-214ENST00000564096 USP32Q8NFA0 1604 aa17.56■□□□□ 0.4
CLK3-214ENST00000564096 A0A1W2PP64 1363 aa17.55■□□□□ 0.4
CLK3-214ENST00000564096 PRR36Q9H6K5 1346 aa17.55■□□□□ 0.4
CLK3-214ENST00000564096 CADPS2Q86UW7 1296 aa17.55■□□□□ 0.4
CLK3-214ENST00000564096 KNSTRNQ9Y448 316 aa17.55■□□□□ 0.4
CLK3-214ENST00000564096 NSD3Q9BZ95 1437 aa17.55■□□□□ 0.4
CLK3-214ENST00000564096 SLC12A5Q9H2X9 1139 aa17.54■□□□□ 0.4
CLK3-214ENST00000564096 CABP1Q9NZU7 370 aa17.53■□□□□ 0.4
CLK3-214ENST00000564096 KTN1Q86UP2 1357 aaKnown RBP17.53■□□□□ 0.4
CLK3-214ENST00000564096 CD163L1Q9NR16 1453 aa17.52■□□□□ 0.4
CLK3-214ENST00000564096 LTBP4Q8N2S1 1624 aa17.52■□□□□ 0.4
CLK3-214ENST00000564096 NUTM2FA1L443 756 aa17.52■□□□□ 0.4
CLK3-214ENST00000564096 KIF1AQ12756 1690 aa17.52■□□□□ 0.39
CLK3-214ENST00000564096 MST1RQ04912 1400 aa17.51■□□□□ 0.39
CLK3-214ENST00000564096 CPSF1Q10570 1443 aaKnown RBP17.51■□□□□ 0.39
CLK3-214ENST00000564096 NSD2O96028 1365 aa17.51■□□□□ 0.39
CLK3-214ENST00000564096 NPC1L1Q9UHC9 1359 aa17.51■□□□□ 0.39
CLK3-214ENST00000564096 CGNL1Q0VF96 1302 aa17.5■□□□□ 0.39
CLK3-214ENST00000564096 EDC4Q6P2E9 1401 aaKnown RBP17.5■□□□□ 0.39
CLK3-214ENST00000564096 PLEKHG3A1L390 1219 aa17.5■□□□□ 0.39
CLK3-214ENST00000564096 C1orf167Q5SNV9 1468 aa17.5■□□□□ 0.39
CLK3-214ENST00000564096 XIRP1Q702N8 1843 aaKnown RBP17.49■□□□□ 0.39
CLK3-214ENST00000564096 ZNF692Q9BU19 519 aaPredicted RBP17.49■□□□□ 0.39
CLK3-214ENST00000564096 POLR3AO14802 1390 aaPredicted RBP17.49■□□□□ 0.39
CLK3-214ENST00000564096 MON2Q7Z3U7 1717 aa17.49■□□□□ 0.39
CLK3-214ENST00000564096 AKAP12Q02952 1782 aa17.48■□□□□ 0.39
CLK3-214ENST00000564096 PER1O15534 1290 aaPredicted RBP17.47■□□□□ 0.39
CLK3-214ENST00000564096 NGDNQ8NEJ9 315 aaKnown RBP17.47■□□□□ 0.39
CLK3-214ENST00000564096 PHF8Q9UPP1 1060 aa17.47■□□□□ 0.39
CLK3-214ENST00000564096 USP6P35125 1406 aa17.47■□□□□ 0.39
CLK3-214ENST00000564096 ACEP12821 1306 aa17.47■□□□□ 0.39
CLK3-214ENST00000564096 NRKQ7Z2Y5 1582 aa17.46■□□□□ 0.39
CLK3-214ENST00000564096 BRD4O60885 1362 aaPredicted RBP17.46■□□□□ 0.39
CLK3-214ENST00000564096 ESCO1Q5FWF5 840 aa17.46■□□□□ 0.39
CLK3-214ENST00000564096 RALBP1Q15311 655 aa17.45■□□□□ 0.38
CLK3-214ENST00000564096 AMER1Q5JTC6 1135 aaPredicted RBP17.44■□□□□ 0.38
CLK3-214ENST00000564096 CARD14Q9BXL6 1004 aa17.44■□□□□ 0.38
CLK3-214ENST00000564096 PRKRIP1Q9H875 184 aaPredicted RBP17.44■□□□□ 0.38
CLK3-214ENST00000564096 IQSEC2Q5JU85 1478 aa17.44■□□□□ 0.38
CLK3-214ENST00000564096 PARD3Q8TEW0 1356 aa17.43■□□□□ 0.38
CLK3-214ENST00000564096 CC2D1BQ5T0F9 858 aaKnown RBP17.43■□□□□ 0.38
CLK3-214ENST00000564096 PMFBP1Q8TBY8 1022 aa17.43■□□□□ 0.38
CLK3-214ENST00000564096 KIF20BQ96Q89 1820 aa17.42■□□□□ 0.38
CLK3-214ENST00000564096 RGPD8O14715 1765 aaPredicted RBP17.42■□□□□ 0.38
CLK3-214ENST00000564096 TTC21AQ8NDW8 1320 aa17.42■□□□□ 0.38
CLK3-214ENST00000564096 MIER1Q8N108 512 aa17.41■□□□□ 0.38
CLK3-214ENST00000564096 CNGB1Q14028 1251 aaPredicted RBP17.4■□□□□ 0.38
CLK3-214ENST00000564096 MYBBP1AQ9BQG0 1328 aaKnown RBP17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms