RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 LAMC1P11047 1609 aa24.62■■□□□ 1.53
CLK3-210ENST00000563112 KNDC1Q76NI1 1749 aa24.61■■□□□ 1.53
CLK3-210ENST00000563112 SIRT1Q96EB6 747 aa24.61■■□□□ 1.53
CLK3-210ENST00000563112 STAC3Q96MF2 364 aa24.61■■□□□ 1.53
CLK3-210ENST00000563112 ORAI2Q96SN7 254 aa24.61■■□□□ 1.53
CLK3-210ENST00000563112 DCAF11Q8TEB1 546 aa24.6■■□□□ 1.53
CLK3-210ENST00000563112 DDX17Q92841 729 aaKnown RBP24.6■■□□□ 1.53
CLK3-210ENST00000563112 KDM2AQ9Y2K7 1162 aa24.6■■□□□ 1.53
CLK3-210ENST00000563112 CDC42BPGQ6DT37 1551 aa24.59■■□□□ 1.53
CLK3-210ENST00000563112 NUTM2BA6NNL0 878 aaPredicted RBP24.57■■□□□ 1.52
CLK3-210ENST00000563112 NUTM2EB1AL46 878 aaPredicted RBP24.57■■□□□ 1.52
CLK3-210ENST00000563112 ESCO1Q5FWF5 840 aa24.57■■□□□ 1.52
CLK3-210ENST00000563112 NUTM2AQ8IVF1 878 aaPredicted RBP24.57■■□□□ 1.52
CLK3-210ENST00000563112 PLEKHH1Q9ULM0 1364 aa24.56■■□□□ 1.52
CLK3-210ENST00000563112 LRP6O75581 1613 aa24.55■■□□□ 1.52
CLK3-210ENST00000563112 POTEAQ6S8J7 498 aa24.55■■□□□ 1.52
CLK3-210ENST00000563112 SOS2Q07890 1332 aaPredicted RBP24.53■■□□□ 1.52
CLK3-210ENST00000563112 NUTM2FA1L443 756 aa24.52■■□□□ 1.52
CLK3-210ENST00000563112 POGKQ9P215 609 aa24.52■■□□□ 1.52
CLK3-210ENST00000563112 ZNF772Q68DY9 489 aaPredicted RBP24.51■■□□□ 1.51
CLK3-210ENST00000563112 PRAM1Q96QH2 718 aa24.51■■□□□ 1.51
CLK3-210ENST00000563112 NPHP3Q7Z494 1330 aa24.51■■□□□ 1.51
CLK3-210ENST00000563112 PNPLA6Q8IY17 1366 aa24.51■■□□□ 1.51
CLK3-210ENST00000563112 SAFB2Q14151 953 aaKnown RBP eCLIP24.48■■□□□ 1.51
CLK3-210ENST00000563112 DLC1Q96QB1 1528 aa24.48■■□□□ 1.51
CLK3-210ENST00000563112 FOXO3O43524 673 aa24.47■■□□□ 1.51
CLK3-210ENST00000563112 FMN2Q9NZ56 1722 aa24.47■■□□□ 1.51
CLK3-210ENST00000563112 TRAK1Q9UPV9 953 aa24.46■■□□□ 1.51
CLK3-210ENST00000563112 ADGRB1O14514 1584 aa24.46■■□□□ 1.51
CLK3-210ENST00000563112 XPCQ01831 940 aaPredicted RBP24.41■■□□□ 1.5
CLK3-210ENST00000563112 C8orf37Q96NL8 207 aa24.41■■□□□ 1.5
CLK3-210ENST00000563112 AFF2P51816 1311 aa24.4■■□□□ 1.5
CLK3-210ENST00000563112 KIF1AQ12756 1690 aa24.4■■□□□ 1.5
CLK3-210ENST00000563112 ADAMTS2O95450 1211 aa24.39■■□□□ 1.49
CLK3-210ENST00000563112 PHF8Q9UPP1 1060 aa24.39■■□□□ 1.49
CLK3-210ENST00000563112 PXDNQ92626 1479 aa24.38■■□□□ 1.49
CLK3-210ENST00000563112 NGLY1Q96IV0 654 aa24.38■■□□□ 1.49
CLK3-210ENST00000563112 MINK1Q8N4C8 1332 aaPredicted RBP24.36■■□□□ 1.49
CLK3-210ENST00000563112 KRT28Q7Z3Y7 464 aa24.36■■□□□ 1.49
CLK3-210ENST00000563112 RGPD8O14715 1765 aaPredicted RBP24.35■■□□□ 1.49
CLK3-210ENST00000563112 EIF3AQ14152 1382 aaKnown RBP24.35■■□□□ 1.49
CLK3-210ENST00000563112 RXRBP28702 533 aa24.35■■□□□ 1.49
CLK3-210ENST00000563112 PSME1Q06323 249 aa24.35■■□□□ 1.49
CLK3-210ENST00000563112 HIRIP3Q9BW71 556 aaPredicted RBP24.35■■□□□ 1.49
CLK3-210ENST00000563112 COL22A1Q8NFW1 1626 aaPredicted RBP24.35■■□□□ 1.49
CLK3-210ENST00000563112 ANKARQ7Z5J8 1434 aa24.35■■□□□ 1.49
CLK3-210ENST00000563112 ADGRB2O60241 1585 aa24.34■■□□□ 1.49
CLK3-210ENST00000563112 KIAA1210Q9ULL0 1709 aa24.32■■□□□ 1.48
CLK3-210ENST00000563112 SPATA31A3Q5VYP0 1347 aa24.32■■□□□ 1.48
CLK3-210ENST00000563112 WASLO00401 505 aaPredicted RBP24.31■■□□□ 1.48
CLK3-210ENST00000563112 QTRT2Q9H974 415 aaKnown RBP24.31■■□□□ 1.48
CLK3-210ENST00000563112 PMFBP1Q8TBY8 1022 aa24.29■■□□□ 1.48
CLK3-210ENST00000563112 ARHGEF28Q8N1W1 1705 aaKnown RBP24.28■■□□□ 1.48
CLK3-210ENST00000563112 SIN3AQ96ST3 1273 aa24.28■■□□□ 1.48
CLK3-210ENST00000563112 USP21Q9UK80 565 aa24.28■■□□□ 1.48
CLK3-210ENST00000563112 RBM6P78332 1123 aaKnown RBP24.27■■□□□ 1.48
CLK3-210ENST00000563112 NEUROD1Q13562 356 aa24.27■■□□□ 1.48
CLK3-210ENST00000563112 L3MBTL2Q969R5 705 aa24.27■■□□□ 1.48
CLK3-210ENST00000563112 USP32Q8NFA0 1604 aa24.26■■□□□ 1.47
CLK3-210ENST00000563112 NBPF1Q3BBV0 1214 aa24.26■■□□□ 1.47
CLK3-210ENST00000563112 TULP4Q9NRJ4 1543 aa24.25■■□□□ 1.47
CLK3-210ENST00000563112 LMOD2Q6P5Q4 547 aa24.25■■□□□ 1.47
CLK3-210ENST00000563112 FNBP4Q8N3X1 1017 aaPredicted RBP24.25■■□□□ 1.47
CLK3-210ENST00000563112 SBNO1A3KN83 1393 aa24.25■■□□□ 1.47
CLK3-210ENST00000563112 TNS3Q68CZ2 1445 aa24.25■■□□□ 1.47
CLK3-210ENST00000563112 HAP1P54257 671 aaPredicted RBP24.24■■□□□ 1.47
CLK3-210ENST00000563112 CDK12Q9NYV4 1490 aaPredicted RBP24.24■■□□□ 1.47
CLK3-210ENST00000563112 TRPC5Q9UL62 973 aaPredicted RBP24.23■■□□□ 1.47
CLK3-210ENST00000563112 PRR36Q9H6K5 1346 aa24.23■■□□□ 1.47
CLK3-210ENST00000563112 GPRASP1Q5JY77 1395 aa24.23■■□□□ 1.47
CLK3-210ENST00000563112 ARHGEF10O15013 1369 aa24.22■■□□□ 1.47
CLK3-210ENST00000563112 TRIM26Q12899 539 aaPredicted RBP24.21■■□□□ 1.47
CLK3-210ENST00000563112 NGDNQ8NEJ9 315 aaKnown RBP24.21■■□□□ 1.47
CLK3-210ENST00000563112 MARF1Q9Y4F3 1742 aaKnown RBP24.21■■□□□ 1.47
CLK3-210ENST00000563112 NUDT16Q96DE0 195 aaKnown RBP24.2■■□□□ 1.46
CLK3-210ENST00000563112 CDK19Q9BWU1 502 aa24.2■■□□□ 1.46
CLK3-210ENST00000563112 PLEKHG5O94827 1062 aa24.18■■□□□ 1.46
CLK3-210ENST00000563112 CENPJQ9HC77 1338 aaPredicted RBP24.16■■□□□ 1.46
CLK3-210ENST00000563112 CABLES1Q8TDN4 633 aa24.16■■□□□ 1.46
CLK3-210ENST00000563112 ITSN1Q15811 1721 aa24.15■■□□□ 1.46
CLK3-210ENST00000563112 ATP7BP35670 1465 aa24.14■■□□□ 1.46
CLK3-210ENST00000563112 ATRNO75882 1429 aa24.14■■□□□ 1.45
CLK3-210ENST00000563112 PAK3O75914 559 aaPredicted RBP24.13■■□□□ 1.45
CLK3-210ENST00000563112 CCDC61Q9Y6R9 512 aa24.13■■□□□ 1.45
CLK3-210ENST00000563112 BCL9LQ86UU0 1499 aa24.13■■□□□ 1.45
CLK3-210ENST00000563112 RGS12O14924 1447 aa24.12■■□□□ 1.45
CLK3-210ENST00000563112 TRPM3Q9HCF6 1732 aaPredicted RBP24.11■■□□□ 1.45
CLK3-210ENST00000563112 SRPK2P78362 688 aaKnown RBP24.11■■□□□ 1.45
CLK3-210ENST00000563112 UNC5CLQ8IV45 518 aa24.11■■□□□ 1.45
CLK3-210ENST00000563112 UPF1Q92900 1129 aaKnown RBP eCLIP24.1■■□□□ 1.45
CLK3-210ENST00000563112 ROCK2O75116 1388 aaKnown RBP24.09■■□□□ 1.45
CLK3-210ENST00000563112 TRPM1Q7Z4N2 1603 aa24.09■■□□□ 1.45
CLK3-210ENST00000563112 SLIT2O94813 1529 aa24.09■■□□□ 1.45
CLK3-210ENST00000563112 GJD4Q96KN9 370 aaPredicted RBP24.08■■□□□ 1.45
CLK3-210ENST00000563112 PLEKHG3A1L390 1219 aa24.07■■□□□ 1.44
CLK3-210ENST00000563112 ALS2Q96Q42 1657 aa24.07■■□□□ 1.44
CLK3-210ENST00000563112 ACEP12821 1306 aa24.07■■□□□ 1.44
CLK3-210ENST00000563112 ABCA3Q99758 1704 aa24.06■■□□□ 1.44
CLK3-210ENST00000563112 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.06■■□□□ 1.44
CLK3-210ENST00000563112 QRICH2Q9H0J4 1663 aa24.05■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 105.5 ms