RNA–Protein interactions for RNA: ENST00000562747.1

CDT1-202, Transcript of chromatin licensing and DNA replication factor 1, humanhuman

TSL 2

Gene CDT1, Length 735 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1-202ENST00000562747 ORAI2Q96SN7 254 aa24.32■■□□□ 1.48
CDT1-202ENST00000562747 COL22A1Q8NFW1 1626 aaPredicted RBP24.3■■□□□ 1.48
CDT1-202ENST00000562747 SOS2Q07890 1332 aaPredicted RBP24.29■■□□□ 1.48
CDT1-202ENST00000562747 ADAMTS2O95450 1211 aa24.28■■□□□ 1.48
CDT1-202ENST00000562747 RGL3Q3MIN7 710 aa24.28■■□□□ 1.48
CDT1-202ENST00000562747 QTRT2Q9H974 415 aaKnown RBP24.28■■□□□ 1.48
CDT1-202ENST00000562747 CDC42BPGQ6DT37 1551 aa24.28■■□□□ 1.48
CDT1-202ENST00000562747 IFT172Q9UG01 1749 aa24.26■■□□□ 1.47
CDT1-202ENST00000562747 RBM6P78332 1123 aaKnown RBP24.25■■□□□ 1.47
CDT1-202ENST00000562747 NGLY1Q96IV0 654 aa24.23■■□□□ 1.47
CDT1-202ENST00000562747 PXDNQ92626 1479 aa24.22■■□□□ 1.47
CDT1-202ENST00000562747 MYOM2P54296 1465 aa24.21■■□□□ 1.47
CDT1-202ENST00000562747 MARF1Q9Y4F3 1742 aaKnown RBP24.21■■□□□ 1.47
CDT1-202ENST00000562747 ADGRF5Q8IZF2 1346 aa24.19■■□□□ 1.46
CDT1-202ENST00000562747 KNDC1Q76NI1 1749 aa24.18■■□□□ 1.46
CDT1-202ENST00000562747 TECPR2O15040 1411 aa24.17■■□□□ 1.46
CDT1-202ENST00000562747 ATRNO75882 1429 aa24.17■■□□□ 1.46
CDT1-202ENST00000562747 USP21Q9UK80 565 aa24.16■■□□□ 1.46
CDT1-202ENST00000562747 PIK3C2GO75747 1445 aa24.15■■□□□ 1.46
CDT1-202ENST00000562747 FMN2Q9NZ56 1722 aa24.15■■□□□ 1.46
CDT1-202ENST00000562747 ESCO1Q5FWF5 840 aa24.14■■□□□ 1.45
CDT1-202ENST00000562747 FNBP4Q8N3X1 1017 aaPredicted RBP24.14■■□□□ 1.45
CDT1-202ENST00000562747 PLEKHH1Q9ULM0 1364 aa24.14■■□□□ 1.45
CDT1-202ENST00000562747 NRXN1Q9ULB1 1477 aa24.13■■□□□ 1.45
CDT1-202ENST00000562747 XPCQ01831 940 aaPredicted RBP24.13■■□□□ 1.45
CDT1-202ENST00000562747 NPHP3Q7Z494 1330 aa24.12■■□□□ 1.45
CDT1-202ENST00000562747 WAPLQ7Z5K2 1190 aa24.12■■□□□ 1.45
CDT1-202ENST00000562747 TRPC5Q9UL62 973 aaPredicted RBP24.12■■□□□ 1.45
CDT1-202ENST00000562747 LRPPRCP42704 1394 aaKnown RBP24.12■■□□□ 1.45
CDT1-202ENST00000562747 STK26Q9P289 416 aa24.11■■□□□ 1.45
CDT1-202ENST00000562747 ATAD2Q6PL18 1390 aa24.11■■□□□ 1.45
CDT1-202ENST00000562747 BCL9LQ86UU0 1499 aa24.11■■□□□ 1.45
CDT1-202ENST00000562747 STAC3Q96MF2 364 aa24.1■■□□□ 1.45
CDT1-202ENST00000562747 NUTM2FA1L443 756 aa24.09■■□□□ 1.45
CDT1-202ENST00000562747 FOXO3O43524 673 aa24.09■■□□□ 1.45
CDT1-202ENST00000562747 KIF1AQ12756 1690 aa24.08■■□□□ 1.45
CDT1-202ENST00000562747 DHX57Q6P158 1386 aaKnown RBP24.08■■□□□ 1.45
CDT1-202ENST00000562747 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.08■■□□□ 1.45
CDT1-202ENST00000562747 TMEM132EQ6IEE7 984 aa24.08■■□□□ 1.45
CDT1-202ENST00000562747 ABCC11Q96J66 1382 aa24.07■■□□□ 1.44
CDT1-202ENST00000562747 RGPD8O14715 1765 aaPredicted RBP24.06■■□□□ 1.44
CDT1-202ENST00000562747 YTHDC2Q9H6S0 1430 aaKnown RBP24.05■■□□□ 1.44
CDT1-202ENST00000562747 DCAF11Q8TEB1 546 aa24.05■■□□□ 1.44
CDT1-202ENST00000562747 C14orf93Q9H972 538 aaKnown RBP24.05■■□□□ 1.44
CDT1-202ENST00000562747 GLI3P10071 1580 aa24.03■■□□□ 1.44
CDT1-202ENST00000562747 EP400Q96L91 3159 aa24.03■■□□□ 1.44
CDT1-202ENST00000562747 USP32Q8NFA0 1604 aa24.02■■□□□ 1.44
CDT1-202ENST00000562747 KDM2AQ9Y2K7 1162 aa24.01■■□□□ 1.43
CDT1-202ENST00000562747 SLIT2O94813 1529 aa24■■□□□ 1.43
CDT1-202ENST00000562747 ABCA3Q99758 1704 aa24■■□□□ 1.43
CDT1-202ENST00000562747 CFAP70Q5T0N1 1121 aa23.99■■□□□ 1.43
CDT1-202ENST00000562747 SPATA31A3Q5VYP0 1347 aa23.99■■□□□ 1.43
CDT1-202ENST00000562747 BRWD3Q6RI45 1802 aa23.97■■□□□ 1.43
CDT1-202ENST00000562747 RALGAPBQ86X10 1494 aa23.97■■□□□ 1.43
CDT1-202ENST00000562747 PLCH1Q4KWH8 1693 aa23.96■■□□□ 1.43
CDT1-202ENST00000562747 GJD4Q96KN9 370 aaPredicted RBP23.96■■□□□ 1.43
CDT1-202ENST00000562747 SIN3AQ96ST3 1273 aa23.95■■□□□ 1.42
CDT1-202ENST00000562747 SRCAPQ6ZRS2 3230 aa23.94■■□□□ 1.42
CDT1-202ENST00000562747 TNS3Q68CZ2 1445 aa23.93■■□□□ 1.42
CDT1-202ENST00000562747 KRT28Q7Z3Y7 464 aa23.93■■□□□ 1.42
CDT1-202ENST00000562747 ADGRB1O14514 1584 aa23.92■■□□□ 1.42
CDT1-202ENST00000562747 UNC5CLQ8IV45 518 aa23.92■■□□□ 1.42
CDT1-202ENST00000562747 SIRT1Q96EB6 747 aa23.92■■□□□ 1.42
CDT1-202ENST00000562747 NEUROD1Q13562 356 aa23.9■■□□□ 1.42
CDT1-202ENST00000562747 PCGF6Q9BYE7 350 aa23.9■■□□□ 1.42
CDT1-202ENST00000562747 NWD2Q9ULI1 1742 aa23.9■■□□□ 1.42
CDT1-202ENST00000562747 CABLES1Q8TDN4 633 aa23.89■■□□□ 1.41
CDT1-202ENST00000562747 PHF8Q9UPP1 1060 aa23.89■■□□□ 1.41
CDT1-202ENST00000562747 ADGRB2O60241 1585 aa23.89■■□□□ 1.41
CDT1-202ENST00000562747 DLC1Q96QB1 1528 aa23.89■■□□□ 1.41
CDT1-202ENST00000562747 KIAA1210Q9ULL0 1709 aa23.88■■□□□ 1.41
CDT1-202ENST00000562747 SAFB2Q14151 953 aaKnown RBP eCLIP23.88■■□□□ 1.41
CDT1-202ENST00000562747 L3MBTL2Q969R5 705 aa23.88■■□□□ 1.41
CDT1-202ENST00000562747 TRPM3Q9HCF6 1732 aaPredicted RBP23.87■■□□□ 1.41
CDT1-202ENST00000562747 PRAM1Q96QH2 718 aa23.87■■□□□ 1.41
CDT1-202ENST00000562747 PLEKHG5O94827 1062 aa23.85■■□□□ 1.41
CDT1-202ENST00000562747 ZRANB1Q9UGI0 708 aa23.85■■□□□ 1.41
CDT1-202ENST00000562747 SBNO1A3KN83 1393 aa23.85■■□□□ 1.41
CDT1-202ENST00000562747 NRAPQ86VF7 1730 aa23.84■■□□□ 1.41
CDT1-202ENST00000562747 CCDC125Q86Z20 511 aa23.84■■□□□ 1.41
CDT1-202ENST00000562747 BLMP54132 1417 aaPredicted RBP23.84■■□□□ 1.41
CDT1-202ENST00000562747 ANKARQ7Z5J8 1434 aa23.83■■□□□ 1.4
CDT1-202ENST00000562747 ALS2Q96Q42 1657 aa23.83■■□□□ 1.4
CDT1-202ENST00000562747 HAP1P54257 671 aaPredicted RBP23.81■■□□□ 1.4
CDT1-202ENST00000562747 PSME1Q06323 249 aa23.81■■□□□ 1.4
CDT1-202ENST00000562747 VPS72Q15906 364 aa23.81■■□□□ 1.4
CDT1-202ENST00000562747 ARHGEF10O15013 1369 aa23.8■■□□□ 1.4
CDT1-202ENST00000562747 SEPT12Q8IYM1 358 aa23.8■■□□□ 1.4
CDT1-202ENST00000562747 TRAK1Q9UPV9 953 aa23.8■■□□□ 1.4
CDT1-202ENST00000562747 CRYBG1Q9Y4K1 1723 aa23.8■■□□□ 1.4
CDT1-202ENST00000562747 LMOD2Q6P5Q4 547 aa23.79■■□□□ 1.4
CDT1-202ENST00000562747 PMFBP1Q8TBY8 1022 aa23.79■■□□□ 1.4
CDT1-202ENST00000562747 POGKQ9P215 609 aa23.78■■□□□ 1.4
CDT1-202ENST00000562747 TONSLQ96HA7 1378 aa23.78■■□□□ 1.4
CDT1-202ENST00000562747 DEFB132Q7Z7B7 95 aa23.77■■□□□ 1.4
CDT1-202ENST00000562747 TULP4Q9NRJ4 1543 aa23.76■■□□□ 1.39
CDT1-202ENST00000562747 HIRIP3Q9BW71 556 aaPredicted RBP23.76■■□□□ 1.39
CDT1-202ENST00000562747 PRR36Q9H6K5 1346 aa23.76■■□□□ 1.39
CDT1-202ENST00000562747 FAM83GA6ND36 823 aa23.75■■□□□ 1.39
CDT1-202ENST00000562747 ARHGEF28Q8N1W1 1705 aaKnown RBP23.75■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms