RNA–Protein interactions for RNA: ENST00000562747.1

CDT1-202, Transcript of chromatin licensing and DNA replication factor 1, humanhuman

TSL 2

Gene CDT1, Length 735 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1-202ENST00000562747 NISCHQ9Y2I1 1504 aa40.83■■■■■ 4.13
CDT1-202ENST00000562747 ABCC9O60706 1549 aa36.92■■■■□ 3.5
CDT1-202ENST00000562747 CCDC180Q9P1Z9 1646 aa36.77■■■■□ 3.48
CDT1-202ENST00000562747 RB1CC1Q8TDY2 1594 aa35.04■■■■□ 3.2
CDT1-202ENST00000562747 DNAJC5BQ9UF47 199 aa34.8■■■■□ 3.16
CDT1-202ENST00000562747 NACADO15069 1562 aa34.73■■■■□ 3.15
CDT1-202ENST00000562747 DCAF8L2P0C7V8 631 aa34.4■■■■□ 3.1
CDT1-202ENST00000562747 UNC13AQ9UPW8 1703 aa34.38■■■■□ 3.09
CDT1-202ENST00000562747 PABPN1Q86U42 306 aaKnown RBP eCLIP34.29■■■■□ 3.08
CDT1-202ENST00000562747 MYO15BQ96JP2 1530 aa34.18■■■■□ 3.06
CDT1-202ENST00000562747 BICRAQ9NZM4 1560 aa34.11■■■■□ 3.05
CDT1-202ENST00000562747 ZCCHC6Q5VYS8 1495 aaKnown RBP33.82■■■■□ 3.01
CDT1-202ENST00000562747 DCAF1Q9Y4B6 1507 aa33.69■■■□□ 2.98
CDT1-202ENST00000562747 SHROOM4Q9ULL8 1493 aa33.51■■■□□ 2.96
CDT1-202ENST00000562747 SCRIBQ14160 1630 aa33.5■■■□□ 2.95
CDT1-202ENST00000562747 CC2D2AQ9P2K1 1620 aa33.37■■■□□ 2.93
CDT1-202ENST00000562747 CECR2Q9BXF3 1484 aa33.25■■■□□ 2.91
CDT1-202ENST00000562747 EIF4G1Q04637 1599 aaKnown RBP33.24■■■□□ 2.91
CDT1-202ENST00000562747 NCAPD3P42695 1498 aa32.05■■■□□ 2.72
CDT1-202ENST00000562747 DNAJC5Q9H3Z4 198 aa32.01■■■□□ 2.71
CDT1-202ENST00000562747 ATAD2BQ9ULI0 1458 aa31.96■■■□□ 2.71
CDT1-202ENST00000562747 SMARCA4P51532 1647 aa31.93■■■□□ 2.7
CDT1-202ENST00000562747 CUX2O14529 1486 aa31.86■■■□□ 2.69
CDT1-202ENST00000562747 HMGXB3Q12766 1538 aa31.85■■■□□ 2.69
CDT1-202ENST00000562747 SMARCA2P51531 1590 aa31.84■■■□□ 2.69
CDT1-202ENST00000562747 ERCC6Q03468 1493 aa31.84■■■□□ 2.69
CDT1-202ENST00000562747 NESP48681 1621 aa31.7■■■□□ 2.66
CDT1-202ENST00000562747 BAZ1AQ9NRL2 1556 aaPredicted RBP31.68■■■□□ 2.66
CDT1-202ENST00000562747 BAZ1BQ9UIG0 1483 aaKnown RBP31.63■■■□□ 2.65
CDT1-202ENST00000562747 PEG3Q9GZU2 1588 aa31.6■■■□□ 2.65
CDT1-202ENST00000562747 MROH2BQ7Z745 1585 aa31.49■■■□□ 2.63
CDT1-202ENST00000562747 THOC2Q8NI27 1593 aaKnown RBP31.46■■■□□ 2.63
CDT1-202ENST00000562747 LAMC3Q9Y6N6 1575 aa31.39■■■□□ 2.62
CDT1-202ENST00000562747 KIF21AQ7Z4S6 1674 aa31.33■■■□□ 2.61
CDT1-202ENST00000562747 PDS5BQ9NTI5 1447 aa31.14■■■□□ 2.58
CDT1-202ENST00000562747 WIZO95785 1651 aa31.13■■■□□ 2.57
CDT1-202ENST00000562747 CADPSQ9ULU8 1353 aa31.05■■■□□ 2.56
CDT1-202ENST00000562747 MRC2Q9UBG0 1479 aa30.96■■■□□ 2.55
CDT1-202ENST00000562747 WDR62O43379 1518 aa30.93■■■□□ 2.54
CDT1-202ENST00000562747 CEP164Q9UPV0 1460 aa30.79■■■□□ 2.52
CDT1-202ENST00000562747 FANCD2Q9BXW9 1451 aa30.74■■■□□ 2.51
CDT1-202ENST00000562747 RSF1Q96T23 1441 aaPredicted RBP30.72■■■□□ 2.51
CDT1-202ENST00000562747 CFTRP13569 1480 aa30.7■■■□□ 2.5
CDT1-202ENST00000562747 TOP2AP11388 1531 aaKnown RBP30.68■■■□□ 2.5
CDT1-202ENST00000562747 URB2Q14146 1524 aaKnown RBP30.55■■■□□ 2.48
CDT1-202ENST00000562747 TRIM41Q8WV44 630 aa30.54■■■□□ 2.48
CDT1-202ENST00000562747 PRDM2Q13029 1718 aa30.47■■■□□ 2.47
CDT1-202ENST00000562747 CCDC88BA6NC98 1476 aa30.31■■■□□ 2.44
CDT1-202ENST00000562747 OSCARQ8IYS5 282 aa30.27■■■□□ 2.44
CDT1-202ENST00000562747 ZNF608Q9ULD9 1512 aaPredicted RBP30.21■■■□□ 2.43
CDT1-202ENST00000562747 TOPBP1Q92547 1522 aa30.17■■■□□ 2.42
CDT1-202ENST00000562747 IFT140Q96RY7 1462 aa30.16■■■□□ 2.42
CDT1-202ENST00000562747 RIMBP3CA6NJZ7 1639 aa30.08■■■□□ 2.41
CDT1-202ENST00000562747 RIMBP3BA6NNM3 1639 aa30.08■■■□□ 2.41
CDT1-202ENST00000562747 RIMBP3Q9UFD9 1639 aa30.08■■■□□ 2.41
CDT1-202ENST00000562747 EIF4G3O43432 1585 aaKnown RBP30.07■■■□□ 2.4
CDT1-202ENST00000562747 DNMBPQ6XZF7 1577 aa30.04■■■□□ 2.4
CDT1-202ENST00000562747 ABCC8Q09428 1581 aa29.98■■■□□ 2.39
CDT1-202ENST00000562747 TARBP1Q13395 1621 aaKnown RBP29.96■■■□□ 2.39
CDT1-202ENST00000562747 ARHGEF11O15085 1522 aa29.93■■■□□ 2.38
CDT1-202ENST00000562747 CHD1O14646 1710 aa29.89■■■□□ 2.38
CDT1-202ENST00000562747 AQRO60306 1485 aaKnown RBP eCLIP29.87■■■□□ 2.378e-8■■■■■ 40.3
CDT1-202ENST00000562747 POLA1P09884 1462 aaPredicted RBP29.85■■■□□ 2.37
CDT1-202ENST00000562747 SUPT5HO00267 1087 aaKnown RBP29.79■■■□□ 2.36
CDT1-202ENST00000562747 RAD54L2Q9Y4B4 1467 aa29.74■■■□□ 2.35
CDT1-202ENST00000562747 ARAP1Q96P48 1450 aa29.64■■■□□ 2.34
CDT1-202ENST00000562747 SOGA1O94964 1423 aa29.63■■■□□ 2.33
CDT1-202ENST00000562747 FGD5Q6ZNL6 1462 aa29.63■■■□□ 2.33
CDT1-202ENST00000562747 TDRD9Q8NDG6 1382 aaKnown RBP29.63■■■□□ 2.33
CDT1-202ENST00000562747 FBLN2P98095 1184 aa29.61■■■□□ 2.33
CDT1-202ENST00000562747 CYB5RLQ6IPT4 315 aa29.61■■■□□ 2.33
CDT1-202ENST00000562747 CUX1P39880 1505 aa29.6■■■□□ 2.33
CDT1-202ENST00000562747 SNAPC4Q5SXM2 1469 aa29.58■■■□□ 2.33
CDT1-202ENST00000562747 WDR97A6NE52 1622 aa29.56■■■□□ 2.32
CDT1-202ENST00000562747 CLASP1Q7Z460 1538 aa29.51■■■□□ 2.32
CDT1-202ENST00000562747 MAGI1Q96QZ7 1491 aaPredicted RBP29.45■■■□□ 2.31
CDT1-202ENST00000562747 GRIN2BQ13224 1484 aa29.42■■■□□ 2.3
CDT1-202ENST00000562747 SYNJ1O43426 1573 aa29.41■■■□□ 2.3
CDT1-202ENST00000562747 PBRM1Q86U86 1689 aa29.4■■■□□ 2.3
CDT1-202ENST00000562747 SYNJ2O15056 1496 aa29.36■■■□□ 2.29
CDT1-202ENST00000562747 CHMP7Q8WUX9 453 aaPredicted RBP29.34■■■□□ 2.29
CDT1-202ENST00000562747 ABCA5Q8WWZ7 1642 aa29.31■■■□□ 2.28
CDT1-202ENST00000562747 TRHP20396 242 aaPredicted RBP29.31■■■□□ 2.28
CDT1-202ENST00000562747 GAPVD1Q14C86 1478 aa29.29■■■□□ 2.28
CDT1-202ENST00000562747 ABCA10Q8WWZ4 1543 aa29.26■■■□□ 2.27
CDT1-202ENST00000562747 ADAMTS12P58397 1594 aa29.09■■■□□ 2.25
CDT1-202ENST00000562747 BIVM-ERCC5R4GMW8 1640 aa29.09■■■□□ 2.25
CDT1-202ENST00000562747 ERCC6L2Q5T890 1561 aa29.08■■■□□ 2.25
CDT1-202ENST00000562747 GRIN2AQ12879 1464 aa29.07■■■□□ 2.24
CDT1-202ENST00000562747 TOP2BQ02880 1626 aa29.06■■■□□ 2.24
CDT1-202ENST00000562747 WRNQ14191 1432 aaPredicted RBP eCLIP29.05■■■□□ 2.24
CDT1-202ENST00000562747 CEP170Q5SW79 1584 aa29.05■■■□□ 2.24
CDT1-202ENST00000562747 NUP160Q12769 1436 aa28.98■■■□□ 2.23
CDT1-202ENST00000562747 SHROOM2Q13796 1616 aa28.94■■■□□ 2.22
CDT1-202ENST00000562747 FHAD1B1AJZ9 1412 aa28.9■■■□□ 2.22
CDT1-202ENST00000562747 ERICH3Q5RHP9 1530 aa28.89■■■□□ 2.21
CDT1-202ENST00000562747 RUSC2Q8N2Y8 1516 aa28.7■■■□□ 2.19
CDT1-202ENST00000562747 PRG4Q92954 1404 aaPredicted RBP28.69■■■□□ 2.18
CDT1-202ENST00000562747 KIF13AQ9H1H9 1805 aa28.67■■■□□ 2.18
CDT1-202ENST00000562747 JPH4Q96JJ6 628 aa28.58■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 120.6 ms