RNA–Protein interactions for RNA: ENST00000562534.5

USB1-206, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 4

Gene USB1, Length 562 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-206ENST00000562534 PLEKHH1Q9ULM0 1364 aa23.18■■□□□ 1.3
USB1-206ENST00000562534 XIRP1Q702N8 1843 aaKnown RBP23.18■■□□□ 1.3
USB1-206ENST00000562534 SLAIN2Q9P270 581 aa23.18■■□□□ 1.3
USB1-206ENST00000562534 ADGRL3Q9HAR2 1447 aa23.17■■□□□ 1.3
USB1-206ENST00000562534 DCCP43146 1447 aa23.16■■□□□ 1.3
USB1-206ENST00000562534 CENPJQ9HC77 1338 aaPredicted RBP23.14■■□□□ 1.3
USB1-206ENST00000562534 EIF3AQ14152 1382 aaKnown RBP23.14■■□□□ 1.29
USB1-206ENST00000562534 PIP4K2BP78356 416 aa23.12■■□□□ 1.29
USB1-206ENST00000562534 MINK1Q8N4C8 1332 aaPredicted RBP23.11■■□□□ 1.29
USB1-206ENST00000562534 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.11■■□□□ 1.29
USB1-206ENST00000562534 SLC24A1O60721 1099 aa23.1■■□□□ 1.29
USB1-206ENST00000562534 HIRIP3Q9BW71 556 aaPredicted RBP23.09■■□□□ 1.29
USB1-206ENST00000562534 SCAF1Q9H7N4 1312 aaKnown RBP23.08■■□□□ 1.29
USB1-206ENST00000562534 WASLO00401 505 aaPredicted RBP23.08■■□□□ 1.29
USB1-206ENST00000562534 ARHGEF28Q8N1W1 1705 aaKnown RBP23.07■■□□□ 1.28
USB1-206ENST00000562534 NALCNQ8IZF0 1738 aa23.05■■□□□ 1.28
USB1-206ENST00000562534 ST20-MTHFSA0A0A6YYL1 179 aa23.04■■□□□ 1.28
USB1-206ENST00000562534 CDK19Q9BWU1 502 aa23.04■■□□□ 1.28
USB1-206ENST00000562534 MST1RQ04912 1400 aa23.03■■□□□ 1.28
USB1-206ENST00000562534 CDC42BPGQ6DT37 1551 aa23.02■■□□□ 1.28
USB1-206ENST00000562534 NUTM2FA1L443 756 aa23.02■■□□□ 1.28
USB1-206ENST00000562534 ZEB1P37275 1124 aaPredicted RBP23.02■■□□□ 1.28
USB1-206ENST00000562534 EVC2Q86UK5 1308 aa23.02■■□□□ 1.28
USB1-206ENST00000562534 USP47Q96K76 1375 aa23.01■■□□□ 1.27
USB1-206ENST00000562534 C1orf167Q5SNV9 1468 aa23.01■■□□□ 1.27
USB1-206ENST00000562534 EIF4G2P78344 907 aaKnown RBP eCLIP23.01■■□□□ 1.27
USB1-206ENST00000562534 ESCO1Q5FWF5 840 aa23.01■■□□□ 1.27
USB1-206ENST00000562534 BRINP3Q76B58 766 aa23■■□□□ 1.27
USB1-206ENST00000562534 SBNO2Q9Y2G9 1366 aa23■■□□□ 1.27
USB1-206ENST00000562534 ORAI2Q96SN7 254 aa22.99■■□□□ 1.27
USB1-206ENST00000562534 ADGRB2O60241 1585 aa22.98■■□□□ 1.27
USB1-206ENST00000562534 SRPK2P78362 688 aaKnown RBP22.98■■□□□ 1.27
USB1-206ENST00000562534 ILDR1Q86SU0 546 aaPredicted RBP22.97■■□□□ 1.27
USB1-206ENST00000562534 NUDT16Q96DE0 195 aaKnown RBP22.97■■□□□ 1.27
USB1-206ENST00000562534 TESK2Q96S53 571 aa22.96■■□□□ 1.27
USB1-206ENST00000562534 CCDC61Q9Y6R9 512 aa22.96■■□□□ 1.27
USB1-206ENST00000562534 ANKARQ7Z5J8 1434 aa22.96■■□□□ 1.27
USB1-206ENST00000562534 QRICH2Q9H0J4 1663 aa22.94■■□□□ 1.26
USB1-206ENST00000562534 PUS7Q96PZ0 661 aaKnown RBP22.94■■□□□ 1.26
USB1-206ENST00000562534 CABP2Q9NPB3 220 aa22.94■■□□□ 1.26
USB1-206ENST00000562534 TMF1P82094 1093 aa22.93■■□□□ 1.26
USB1-206ENST00000562534 PHF8Q9UPP1 1060 aa22.93■■□□□ 1.26
USB1-206ENST00000562534 FMN2Q9NZ56 1722 aa22.93■■□□□ 1.26
USB1-206ENST00000562534 HSPA5P11021 654 aaKnown RBP22.92■■□□□ 1.26
USB1-206ENST00000562534 PRR36Q9H6K5 1346 aa22.91■■□□□ 1.26
USB1-206ENST00000562534 TULP4Q9NRJ4 1543 aa22.91■■□□□ 1.26
USB1-206ENST00000562534 ROBO1Q9Y6N7 1651 aa22.9■■□□□ 1.26
USB1-206ENST00000562534 HSPA1LP34931 641 aa22.9■■□□□ 1.26
USB1-206ENST00000562534 CDCA8Q53HL2 280 aa22.9■■□□□ 1.26
USB1-206ENST00000562534 FOXO3O43524 673 aa22.89■■□□□ 1.25
USB1-206ENST00000562534 NPHP3Q7Z494 1330 aa22.88■■□□□ 1.25
USB1-206ENST00000562534 PLEKHG3A1L390 1219 aa22.88■■□□□ 1.25
USB1-206ENST00000562534 PMFBP1Q8TBY8 1022 aa22.88■■□□□ 1.25
USB1-206ENST00000562534 PSME1Q06323 249 aa22.87■■□□□ 1.25
USB1-206ENST00000562534 NGDNQ8NEJ9 315 aaKnown RBP22.86■■□□□ 1.25
USB1-206ENST00000562534 ATAD2Q6PL18 1390 aa22.86■■□□□ 1.25
USB1-206ENST00000562534 LRRC59Q96AG4 307 aaKnown RBP22.85■■□□□ 1.25
USB1-206ENST00000562534 CABP1Q9NZU7 370 aa22.85■■□□□ 1.25
USB1-206ENST00000562534 DDX17Q92841 729 aaKnown RBP22.84■■□□□ 1.25
USB1-206ENST00000562534 KRT28Q7Z3Y7 464 aa22.83■■□□□ 1.25
USB1-206ENST00000562534 ATP7BP35670 1465 aa22.83■■□□□ 1.25
USB1-206ENST00000562534 SOS2Q07890 1332 aaPredicted RBP22.82■■□□□ 1.24
USB1-206ENST00000562534 USP32Q8NFA0 1604 aa22.82■■□□□ 1.24
USB1-206ENST00000562534 RGPD8O14715 1765 aaPredicted RBP22.82■■□□□ 1.24
USB1-206ENST00000562534 ZNF692Q9BU19 519 aaPredicted RBP22.81■■□□□ 1.24
USB1-206ENST00000562534 PPIP5K1Q6PFW1 1433 aa22.81■■□□□ 1.24
USB1-206ENST00000562534 ACEP12821 1306 aa22.81■■□□□ 1.24
USB1-206ENST00000562534 AHDC1Q5TGY3 1603 aaPredicted RBP22.79■■□□□ 1.24
USB1-206ENST00000562534 KIF1AQ12756 1690 aa22.79■■□□□ 1.24
USB1-206ENST00000562534 TMC1Q8TDI8 760 aa22.79■■□□□ 1.24
USB1-206ENST00000562534 DISP3Q9P2K9 1392 aa22.78■■□□□ 1.24
USB1-206ENST00000562534 POLR3AO14802 1390 aaPredicted RBP22.77■■□□□ 1.24
USB1-206ENST00000562534 XPCQ01831 940 aaPredicted RBP22.77■■□□□ 1.24
USB1-206ENST00000562534 SLC12A5Q9H2X9 1139 aa22.76■■□□□ 1.23
USB1-206ENST00000562534 PHLPP1O60346 1717 aa22.76■■□□□ 1.23
USB1-206ENST00000562534 ITSN1Q15811 1721 aa22.76■■□□□ 1.23
USB1-206ENST00000562534 TERF2IPQ9NYB0 399 aa22.75■■□□□ 1.23
USB1-206ENST00000562534 NHSL1Q5SYE7 1610 aa22.75■■□□□ 1.23
USB1-206ENST00000562534 NINLQ9Y2I6 1382 aa22.75■■□□□ 1.23
USB1-206ENST00000562534 HDGFL2Q7Z4V5 671 aaPredicted RBP22.73■■□□□ 1.23
USB1-206ENST00000562534 SBNO1A3KN83 1393 aa22.73■■□□□ 1.23
USB1-206ENST00000562534 JCADQ9P266 1359 aa22.73■■□□□ 1.23
USB1-206ENST00000562534 SPATA31A3Q5VYP0 1347 aa22.72■■□□□ 1.23
USB1-206ENST00000562534 BRD4O60885 1362 aaPredicted RBP22.72■■□□□ 1.23
USB1-206ENST00000562534 PXDNQ92626 1479 aa22.72■■□□□ 1.23
USB1-206ENST00000562534 PAK3O75914 559 aaPredicted RBP22.71■■□□□ 1.23
USB1-206ENST00000562534 C11orf95C9JLR9 678 aaPredicted RBP22.7■■□□□ 1.22
USB1-206ENST00000562534 POLR3GLQ9BT43 218 aa22.7■■□□□ 1.22
USB1-206ENST00000562534 COL16A1Q07092 1604 aaPredicted RBP22.7■■□□□ 1.22
USB1-206ENST00000562534 TOPAZ1Q8N9V7 1692 aa22.7■■□□□ 1.22
USB1-206ENST00000562534 CPSF1Q10570 1443 aaKnown RBP22.68■■□□□ 1.22
USB1-206ENST00000562534 LMOD2Q6P5Q4 547 aa22.68■■□□□ 1.22
USB1-206ENST00000562534 KTN1Q86UP2 1357 aaKnown RBP22.66■■□□□ 1.22
USB1-206ENST00000562534 SPATA31A6Q5VVP1 1343 aa22.66■■□□□ 1.22
USB1-206ENST00000562534 ARHGEF10O15013 1369 aa22.65■■□□□ 1.22
USB1-206ENST00000562534 USP6P35125 1406 aa22.65■■□□□ 1.22
USB1-206ENST00000562534 PNPLA6Q8IY17 1366 aa22.64■■□□□ 1.22
USB1-206ENST00000562534 ABTB2Q8N961 1025 aa22.64■■□□□ 1.21
USB1-206ENST00000562534 TNS3Q68CZ2 1445 aa22.64■■□□□ 1.21
USB1-206ENST00000562534 KIF7Q2M1P5 1343 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 1342.5 ms