RNA–Protein interactions for RNA: ENST00000560236.1

LRRC28-218, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 703 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-218ENST00000560236 CLCN1P35523 988 aa9.29□□□□□ -0.92
LRRC28-218ENST00000560236 KRI1Q8N9T8 703 aaKnown RBP9.29□□□□□ -0.92
LRRC28-218ENST00000560236 USB1Q9BQ65 265 aaKnown RBP9.29□□□□□ -0.92
LRRC28-218ENST00000560236 GPCPD1Q9NPB8 672 aa9.29□□□□□ -0.92
LRRC28-218ENST00000560236 MMP16P51512 607 aa9.28□□□□□ -0.92
LRRC28-218ENST00000560236 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.28□□□□□ -0.92
LRRC28-218ENST00000560236 CYP4X1Q8N118 509 aa9.27□□□□□ -0.93
LRRC28-218ENST00000560236 HLA-CQ95604 372 aa9.27□□□□□ -0.93
LRRC28-218ENST00000560236 ST8SIA5O15466 376 aa9.26□□□□□ -0.93
LRRC28-218ENST00000560236 HOXA2O43364 376 aa9.26□□□□□ -0.93
LRRC28-218ENST00000560236 FAM217BQ9NTX9 383 aaPredicted RBP9.26□□□□□ -0.93
LRRC28-218ENST00000560236 TOR4AQ9NXH8 423 aa9.26□□□□□ -0.93
LRRC28-218ENST00000560236 DXOO77932 396 aaKnown RBP9.25□□□□□ -0.93
LRRC28-218ENST00000560236 ZNF775Q96BV0 537 aaPredicted RBP9.25□□□□□ -0.93
LRRC28-218ENST00000560236 AAASQ9NRG9 546 aa9.25□□□□□ -0.93
LRRC28-218ENST00000560236 POTECB2RU33 542 aa9.24□□□□□ -0.93
LRRC28-218ENST00000560236 TRIM32Q13049 653 aa9.24□□□□□ -0.93
LRRC28-218ENST00000560236 NUTM1Q86Y26 1132 aa9.23□□□□□ -0.93
LRRC28-218ENST00000560236 TTC24A2A3L6 582 aaPredicted RBP9.22□□□□□ -0.93
LRRC28-218ENST00000560236 WNT7AO00755 349 aa9.22□□□□□ -0.93
LRRC28-218ENST00000560236 GUCA2AQ02747 115 aa9.22□□□□□ -0.93
LRRC28-218ENST00000560236 CCDC24Q8N4L8 307 aa9.22□□□□□ -0.93
LRRC28-218ENST00000560236 CRIPAKQ8N1N5 446 aa9.21□□□□□ -0.94
LRRC28-218ENST00000560236 AVPP01185 164 aa9.2□□□□□ -0.94
LRRC28-218ENST00000560236 AXIN1O15169 862 aa9.19□□□□□ -0.94
LRRC28-218ENST00000560236 SYMPKQ92797 1274 aaKnown RBP9.19□□□□□ -0.94
LRRC28-218ENST00000560236 REPIN1Q9BWE0 567 aaKnown RBP9.19□□□□□ -0.94
LRRC28-218ENST00000560236 CTC1Q2NKJ3 1217 aa9.18□□□□□ -0.94
LRRC28-218ENST00000560236 SNIP1Q8TAD8 396 aaKnown RBP9.18□□□□□ -0.94
LRRC28-218ENST00000560236 MRGPRX2Q96LB1 330 aa9.18□□□□□ -0.94
LRRC28-218ENST00000560236 JUNDP17535 347 aa9.17□□□□□ -0.94
LRRC28-218ENST00000560236 SSTR3P32745 418 aaPredicted RBP9.17□□□□□ -0.94
LRRC28-218ENST00000560236 TTLL12Q14166 644 aaPredicted RBP9.17□□□□□ -0.94
LRRC28-218ENST00000560236 BARGINQ6ZT62 677 aa9.17□□□□□ -0.94
LRRC28-218ENST00000560236 DACH1Q9UI36 760 aa9.17□□□□□ -0.94
LRRC28-218ENST00000560236 ZMYND10O75800 440 aa9.16□□□□□ -0.94
LRRC28-218ENST00000560236 FDX1P10109 184 aa9.16□□□□□ -0.94
LRRC28-218ENST00000560236 RETREG3Q86VR2 466 aa9.16□□□□□ -0.94
LRRC28-218ENST00000560236 C6orf229H3BNL8 230 aa9.15□□□□□ -0.94
LRRC28-218ENST00000560236 SMPD1P17405 629 aa9.15□□□□□ -0.94
LRRC28-218ENST00000560236 SMCPP49901 116 aaPredicted RBP9.15□□□□□ -0.94
LRRC28-218ENST00000560236 RC3H1Q5TC82 1133 aaKnown RBP9.14□□□□□ -0.95
LRRC28-218ENST00000560236 ZC3H15Q8WU90 426 aaKnown RBP9.14□□□□□ -0.95
LRRC28-218ENST00000560236 SPIRE2Q8WWL2 714 aa9.14□□□□□ -0.95
LRRC28-218ENST00000560236 PCDHGC3Q9UN70 934 aa9.14□□□□□ -0.95
LRRC28-218ENST00000560236 J3QL48 77 aa9.13□□□□□ -0.95
LRRC28-218ENST00000560236 WNT7BP56706 349 aa9.13□□□□□ -0.95
LRRC28-218ENST00000560236 AMHR2Q16671 573 aa9.13□□□□□ -0.95
LRRC28-218ENST00000560236 NUDT12Q9BQG2 462 aa9.13□□□□□ -0.95
LRRC28-218ENST00000560236 SKOR1P84550 965 aa9.12□□□□□ -0.95
LRRC28-218ENST00000560236 GMPR2Q9P2T1 348 aaKnown RBP9.12□□□□□ -0.95
LRRC28-218ENST00000560236 C11orf95C9JLR9 678 aaPredicted RBP9.11□□□□□ -0.95
LRRC28-218ENST00000560236 NDUFV2P19404 249 aa9.11□□□□□ -0.95
LRRC28-218ENST00000560236 GIGYF2Q6Y7W6 1299 aaKnown RBP9.11□□□□□ -0.95
LRRC28-218ENST00000560236 MOXD2PA6NHM9 499 aa9.1□□□□□ -0.95
LRRC28-218ENST00000560236 MS4A1P11836 297 aa9.1□□□□□ -0.95
LRRC28-218ENST00000560236 PTCRAQ6ISU1 281 aaPredicted RBP9.09□□□□□ -0.95
LRRC28-218ENST00000560236 CCNYL3P0C7X3 344 aa9.08□□□□□ -0.96
LRRC28-218ENST00000560236 HPS1Q92902 700 aa9.08□□□□□ -0.96
LRRC28-218ENST00000560236 BEGAINQ9BUH8 593 aa9.08□□□□□ -0.96
LRRC28-218ENST00000560236 ALDH1A1P00352 501 aa9.07□□□□□ -0.96
LRRC28-218ENST00000560236 ATP13A2Q9NQ11 1180 aa9.07□□□□□ -0.96
LRRC28-218ENST00000560236 MTMR2Q13614 643 aa9.06□□□□□ -0.96
LRRC28-218ENST00000560236 PTPRNQ16849 979 aa9.06□□□□□ -0.96
LRRC28-218ENST00000560236 TREML4Q6UXN2 200 aa9.06□□□□□ -0.96
LRRC28-218ENST00000560236 EHBP1Q8NDI1 1231 aa9.06□□□□□ -0.96
LRRC28-218ENST00000560236 PRR7Q8TB68 274 aa9.06□□□□□ -0.96
LRRC28-218ENST00000560236 SPDYE5A6NIY4 337 aa9.05□□□□□ -0.96
LRRC28-218ENST00000560236 DIXDC1Q155Q3 683 aa9.04□□□□□ -0.96
LRRC28-218ENST00000560236 PARP9Q8IXQ6 854 aa9.04□□□□□ -0.96
LRRC28-218ENST00000560236 TBC1D2Q9BYX2 928 aa9.04□□□□□ -0.96
LRRC28-218ENST00000560236 EVA1BQ9NVM1 165 aa9.04□□□□□ -0.96
LRRC28-218ENST00000560236 UNC93B1Q9H1C4 597 aa9.03□□□□□ -0.96
LRRC28-218ENST00000560236 SENP2Q9HC62 589 aa9.03□□□□□ -0.96
LRRC28-218ENST00000560236 TRIM66O15016 1216 aa9.02□□□□□ -0.97
LRRC28-218ENST00000560236 SIAH2O43255 324 aa9.02□□□□□ -0.97
LRRC28-218ENST00000560236 GJA5P36382 358 aa9.02□□□□□ -0.97
LRRC28-218ENST00000560236 SH3BP2P78314 561 aa9.02□□□□□ -0.97
LRRC28-218ENST00000560236 DESI1Q6ICB0 168 aa9.02□□□□□ -0.97
LRRC28-218ENST00000560236 AK7Q96M32 723 aa9.02□□□□□ -0.97
LRRC28-218ENST00000560236 SNRPBP14678 240 aaKnown RBP9.01□□□□□ -0.97
LRRC28-218ENST00000560236 KCNH2Q12809 1159 aa9.01□□□□□ -0.97
LRRC28-218ENST00000560236 LCE2AQ5TA79 106 aaPredicted RBP9.01□□□□□ -0.97
LRRC28-218ENST00000560236 RSBN1LQ6PCB5 846 aaPredicted RBP9.01□□□□□ -0.97
LRRC28-218ENST00000560236 TRIM47Q96LD4 638 aa9.01□□□□□ -0.97
LRRC28-218ENST00000560236 WASF2Q9Y6W5 498 aa9.01□□□□□ -0.97
LRRC28-218ENST00000560236 LINC01559Q495D7 138 aa9□□□□□ -0.97
LRRC28-218ENST00000560236 BAP1Q92560 729 aa9□□□□□ -0.97
LRRC28-218ENST00000560236 WFS1O76024 890 aa8.99□□□□□ -0.97
LRRC28-218ENST00000560236 PCDHB15Q9Y5E8 787 aa8.99□□□□□ -0.97
LRRC28-218ENST00000560236 SPTLC1O15269 473 aa8.98□□□□□ -0.97
LRRC28-218ENST00000560236 ZNF511Q8NB15 262 aa8.98□□□□□ -0.97
LRRC28-218ENST00000560236 KIFC2Q96AC6 838 aa8.98□□□□□ -0.97
LRRC28-218ENST00000560236 CTHP32929 405 aa8.97□□□□□ -0.97
LRRC28-218ENST00000560236 LYPD8Q6UX82 237 aa8.97□□□□□ -0.97
LRRC28-218ENST00000560236 RIC3Q7Z5B4 369 aa8.97□□□□□ -0.97
LRRC28-218ENST00000560236 ZBTB3Q9H5J0 574 aa8.97□□□□□ -0.97
LRRC28-218ENST00000560236 CFAP99D6REC4 459 aa8.96□□□□□ -0.98
LRRC28-218ENST00000560236 HRCP23327 699 aa8.96□□□□□ -0.98
LRRC28-218ENST00000560236 CAPN5O15484 640 aaPredicted RBP8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms