RNA–Protein interactions for RNA: ENST00000559193.5

SPG11-215, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SPG11, Length 2,579 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-215ENST00000559193 PDE3AQ14432 1141 aa21.49■■□□□ 1.03
SPG11-215ENST00000559193 HECW2Q9P2P5 1572 aa21.48■■□□□ 1.03
SPG11-215ENST00000559193 CGNL1Q0VF96 1302 aa21.48■■□□□ 1.03
SPG11-215ENST00000559193 IGHDP01880 384 aa21.48■■□□□ 1.03
SPG11-215ENST00000559193 TNNT2P45379 298 aaPredicted RBP21.48■■□□□ 1.03
SPG11-215ENST00000559193 SLC4A3P48751 1232 aa21.48■■□□□ 1.03
SPG11-215ENST00000559193 TMEM132EQ6IEE7 984 aa21.47■■□□□ 1.03
SPG11-215ENST00000559193 MLH3Q9UHC1 1453 aa21.46■■□□□ 1.03
SPG11-215ENST00000559193 RUNDC1Q96C34 613 aa21.45■■□□□ 1.03
SPG11-215ENST00000559193 ABCC3O15438 1527 aa21.45■■□□□ 1.02
SPG11-215ENST00000559193 PANK1Q8TE04 598 aa21.45■■□□□ 1.02
SPG11-215ENST00000559193 PHF23Q9BUL5 403 aaPredicted RBP21.45■■□□□ 1.02
SPG11-215ENST00000559193 RRP7AQ9Y3A4 280 aaKnown RBP21.45■■□□□ 1.02
SPG11-215ENST00000559193 CFAP65Q6ZU64 1925 aaKnown RBP21.44■■□□□ 1.02
SPG11-215ENST00000559193 GGT6Q6P531 493 aa21.44■■□□□ 1.02
SPG11-215ENST00000559193 CFAP74Q9C0B2 1584 aa21.44■■□□□ 1.02
SPG11-215ENST00000559193 CLUAP1Q96AJ1 413 aa21.44■■□□□ 1.02
SPG11-215ENST00000559193 NEUROD2Q15784 382 aa21.43■■□□□ 1.02
SPG11-215ENST00000559193 COG6Q9Y2V7 657 aa21.43■■□□□ 1.02
SPG11-215ENST00000559193 GLI2P10070 1586 aa21.43■■□□□ 1.02
SPG11-215ENST00000559193 RPGRIP1LQ68CZ1 1315 aa21.43■■□□□ 1.02
SPG11-215ENST00000559193 TCP11L2Q8N4U5 519 aa21.43■■□□□ 1.02
SPG11-215ENST00000559193 CANXP27824 592 aaKnown RBP21.43■■□□□ 1.02
SPG11-215ENST00000559193 TULP4Q9NRJ4 1543 aa21.41■■□□□ 1.02
SPG11-215ENST00000559193 VIRMAQ69YN4 1812 aaKnown RBP21.41■■□□□ 1.02
SPG11-215ENST00000559193 CD109Q6YHK3 1445 aa21.41■■□□□ 1.02
SPG11-215ENST00000559193 MTHFSP49914 203 aa21.41■■□□□ 1.02
SPG11-215ENST00000559193 RARSP54136 660 aaKnown RBP21.41■■□□□ 1.02
SPG11-215ENST00000559193 SIGLEC1Q9BZZ2 1709 aa21.4■■□□□ 1.02
SPG11-215ENST00000559193 DAXXQ9UER7 740 aaPredicted RBP21.4■■□□□ 1.02
SPG11-215ENST00000559193 ARHGEF28Q8N1W1 1705 aaKnown RBP21.4■■□□□ 1.02
SPG11-215ENST00000559193 CAMSAP1Q5T5Y3 1602 aa21.4■■□□□ 1.02
SPG11-215ENST00000559193 NFKBIBQ15653 356 aa21.4■■□□□ 1.02
SPG11-215ENST00000559193 WDR63Q8IWG1 891 aa21.39■■□□□ 1.01
SPG11-215ENST00000559193 FRAT1Q92837 279 aaPredicted RBP21.39■■□□□ 1.01
SPG11-215ENST00000559193 PIK3C2BO00750 1634 aa21.38■■□□□ 1.01
SPG11-215ENST00000559193 NEXMIFQ5QGS0 1516 aa21.38■■□□□ 1.01
SPG11-215ENST00000559193 ANKRD36BQ8N2N9 1353 aa21.37■■□□□ 1.01
SPG11-215ENST00000559193 CCDC27Q2M243 656 aa21.37■■□□□ 1.01
SPG11-215ENST00000559193 CFAP53Q96M91 514 aa21.36■■□□□ 1.01
SPG11-215ENST00000559193 USP19O94966 1318 aa21.36■■□□□ 1.01
SPG11-215ENST00000559193 MAPK8IP3Q9UPT6 1336 aa21.36■■□□□ 1.01
SPG11-215ENST00000559193 PUS7Q96PZ0 661 aaKnown RBP21.36■■□□□ 1.01
SPG11-215ENST00000559193 EVC2Q86UK5 1308 aa21.36■■□□□ 1.01
SPG11-215ENST00000559193 NSD2O96028 1365 aa21.35■■□□□ 1.01
SPG11-215ENST00000559193 NUTM2DQ5VT03 806 aaPredicted RBP21.35■■□□□ 1.01
SPG11-215ENST00000559193 TNNQ9UQP3 1299 aa21.35■■□□□ 1.01
SPG11-215ENST00000559193 RLBP1P12271 317 aa21.35■■□□□ 1.01
SPG11-215ENST00000559193 NPM1P06748 294 aaKnown RBP eCLIP21.34■■□□□ 1.01
SPG11-215ENST00000559193 ADGRB2O60241 1585 aa21.33■■□□□ 1.01
SPG11-215ENST00000559193 BCL2L13Q9BXK5 485 aa21.32■■□□□ 1
SPG11-215ENST00000559193 VGFO15240 615 aaPredicted RBP21.31■■□□□ 1
SPG11-215ENST00000559193 PCDHB15Q9Y5E8 787 aa21.31■■□□□ 1
SPG11-215ENST00000559193 AAMPQ13685 434 aa21.31■■□□□ 1
SPG11-215ENST00000559193 CABP2Q9NPB3 220 aa21.31■■□□□ 1
SPG11-215ENST00000559193 NCBP3Q53F19 620 aaKnown RBP21.3■■□□□ 1
SPG11-215ENST00000559193 PMFBP1Q8TBY8 1022 aa21.3■■□□□ 1
SPG11-215ENST00000559193 SEC24BO95487 1268 aa21.3■■□□□ 1
SPG11-215ENST00000559193 NLRP1Q9C000 1473 aa21.29■■□□□ 1
SPG11-215ENST00000559193 U2AF1L5P0DN76 240 aaPredicted RBP21.29■■□□□ 1
SPG11-215ENST00000559193 U2AF1Q01081 240 aaKnown RBP eCLIP21.29■■□□□ 16e-6■■■■□ 22.1
SPG11-215ENST00000559193 DIP2CQ9Y2E4 1556 aa21.28■■□□□ 1
SPG11-215ENST00000559193 MYH16Q9H6N6 1097 aa21.28■■□□□ 1
SPG11-215ENST00000559193 GSE1Q14687 1217 aa21.27■■□□□ 1
SPG11-215ENST00000559193 A0A1W2PP64 1363 aa21.27■■□□□ 1
SPG11-215ENST00000559193 ABCC11Q96J66 1382 aa21.27■■□□□ 1
SPG11-215ENST00000559193 RAPGEF3O95398 923 aa21.26■□□□□ 0.99
SPG11-215ENST00000559193 IL27Q8NEV9 243 aa21.26■□□□□ 0.99
SPG11-215ENST00000559193 SAFB2Q14151 953 aaKnown RBP eCLIP21.26■□□□□ 0.99
SPG11-215ENST00000559193 ARHGAP31Q2M1Z3 1444 aa21.26■□□□□ 0.99
SPG11-215ENST00000559193 NEO1Q92859 1461 aa21.25■□□□□ 0.99
SPG11-215ENST00000559193 COL3A1P02461 1466 aaPredicted RBP21.24■□□□□ 0.99
SPG11-215ENST00000559193 ZMYM3Q14202 1370 aa21.24■□□□□ 0.99
SPG11-215ENST00000559193 ZFYVE9O95405 1425 aa21.24■□□□□ 0.99
SPG11-215ENST00000559193 IDI1Q13907 227 aa21.23■□□□□ 0.99
SPG11-215ENST00000559193 PDZRN3Q9UPQ7 1066 aa21.23■□□□□ 0.99
SPG11-215ENST00000559193 FRAT2O75474 233 aaPredicted RBP21.23■□□□□ 0.99
SPG11-215ENST00000559193 MVPQ14764 893 aaKnown RBP21.22■□□□□ 0.99
SPG11-215ENST00000559193 PLEKHF1Q96S99 279 aa21.21■□□□□ 0.99
SPG11-215ENST00000559193 PTPRMP28827 1452 aa21.21■□□□□ 0.99
SPG11-215ENST00000559193 TSR2Q969E8 191 aaKnown RBP21.21■□□□□ 0.99
SPG11-215ENST00000559193 GGNBP2Q9H3C7 697 aa21.2■□□□□ 0.98
SPG11-215ENST00000559193 STK26Q9P289 416 aa21.2■□□□□ 0.98
SPG11-215ENST00000559193 RWDD1Q9H446 243 aaPredicted RBP21.2■□□□□ 0.98
SPG11-215ENST00000559193 SRPK2P78362 688 aaKnown RBP21.19■□□□□ 0.98
SPG11-215ENST00000559193 ZKSCAN2Q63HK3 967 aa21.19■□□□□ 0.98
SPG11-215ENST00000559193 CT47B1P0C2W7 299 aaPredicted RBP21.19■□□□□ 0.98
SPG11-215ENST00000559193 SENP3Q9H4L4 574 aaPredicted RBP21.18■□□□□ 0.98
SPG11-215ENST00000559193 CD163L1Q9NR16 1453 aa21.18■□□□□ 0.98
SPG11-215ENST00000559193 MYO5BQ9ULV0 1848 aa21.18■□□□□ 0.98
SPG11-215ENST00000559193 U2SURPO15042 1029 aaKnown RBP21.18■□□□□ 0.98
SPG11-215ENST00000559193 ANKRD26Q9UPS8 1709 aa21.18■□□□□ 0.98
SPG11-215ENST00000559193 TMPOP42166 694 aaKnown RBP21.17■□□□□ 0.98
SPG11-215ENST00000559193 DZIP1LQ8IYY4 767 aaKnown RBP21.17■□□□□ 0.98
SPG11-215ENST00000559193 TRIM35Q9UPQ4 493 aa21.17■□□□□ 0.98
SPG11-215ENST00000559193 TMEM131LA2VDJ0 1609 aa21.17■□□□□ 0.98
SPG11-215ENST00000559193 RICTORQ6R327 1708 aa21.17■□□□□ 0.98
SPG11-215ENST00000559193 EXOSC9Q06265 439 aaKnown RBP21.17■□□□□ 0.98
SPG11-215ENST00000559193 SLC52A1Q9NWF4 448 aa21.17■□□□□ 0.98
SPG11-215ENST00000559193 MED14O60244 1454 aa21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms