RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 APAF1O14727 1248 aa21.03■□□□□ 0.96
SHMT2-232ENST00000557487 ERVK-7P63135 1459 aa21.02■□□□□ 0.96
SHMT2-232ENST00000557487 MLECQ14165 292 aa21.02■□□□□ 0.96
SHMT2-232ENST00000557487 IL27Q8NEV9 243 aa21.01■□□□□ 0.95
SHMT2-232ENST00000557487 PTPRMP28827 1452 aa21■□□□□ 0.95
SHMT2-232ENST00000557487 CENPJQ9HC77 1338 aaPredicted RBP20.99■□□□□ 0.95
SHMT2-232ENST00000557487 RGS3P49796 1198 aa20.98■□□□□ 0.95
SHMT2-232ENST00000557487 NCBP3Q53F19 620 aaKnown RBP20.98■□□□□ 0.95
SHMT2-232ENST00000557487 CCDC146Q8IYE0 955 aa20.98■□□□□ 0.95
SHMT2-232ENST00000557487 NRXN1Q9ULB1 1477 aa20.97■□□□□ 0.95
SHMT2-232ENST00000557487 PPP6R1Q9UPN7 881 aa20.97■□□□□ 0.95
SHMT2-232ENST00000557487 CLUAP1Q96AJ1 413 aa20.96■□□□□ 0.95
SHMT2-232ENST00000557487 SPINK5Q9NQ38 1064 aaPredicted RBP20.96■□□□□ 0.95
SHMT2-232ENST00000557487 SETBP1Q9Y6X0 1596 aa20.96■□□□□ 0.95
SHMT2-232ENST00000557487 BCAR3O75815 825 aa20.96■□□□□ 0.95
SHMT2-232ENST00000557487 BECN1Q14457 450 aa20.95■□□□□ 0.94
SHMT2-232ENST00000557487 IFT172Q9UG01 1749 aa20.95■□□□□ 0.94
SHMT2-232ENST00000557487 FER1L4A9Z1Z3 1794 aa20.95■□□□□ 0.94
SHMT2-232ENST00000557487 SLC4A3P48751 1232 aa20.94■□□□□ 0.94
SHMT2-232ENST00000557487 RIMS1Q86UR5 1692 aaKnown RBP20.94■□□□□ 0.94
SHMT2-232ENST00000557487 KIF1BO60333 1816 aa20.94■□□□□ 0.94
SHMT2-232ENST00000557487 PMFBP1Q8TBY8 1022 aa20.94■□□□□ 0.94
SHMT2-232ENST00000557487 WWC1Q8IX03 1113 aa20.93■□□□□ 0.94
SHMT2-232ENST00000557487 FRAT1Q92837 279 aaPredicted RBP20.93■□□□□ 0.94
SHMT2-232ENST00000557487 KIF3BO15066 747 aa20.92■□□□□ 0.94
SHMT2-232ENST00000557487 CARD14Q9BXL6 1004 aa20.92■□□□□ 0.94
SHMT2-232ENST00000557487 USP32Q8NFA0 1604 aa20.91■□□□□ 0.94
SHMT2-232ENST00000557487 IGHDP01880 384 aa20.91■□□□□ 0.94
SHMT2-232ENST00000557487 GGT6Q6P531 493 aa20.91■□□□□ 0.94
SHMT2-232ENST00000557487 CANXP27824 592 aaKnown RBP20.9■□□□□ 0.94
SHMT2-232ENST00000557487 WDR63Q8IWG1 891 aa20.9■□□□□ 0.94
SHMT2-232ENST00000557487 EFCAB6Q5THR3 1501 aa20.9■□□□□ 0.94
SHMT2-232ENST00000557487 LMTK2Q8IWU2 1503 aa20.9■□□□□ 0.94
SHMT2-232ENST00000557487 RUNDC1Q96C34 613 aa20.9■□□□□ 0.94
SHMT2-232ENST00000557487 ESF1Q9H501 851 aaKnown RBP20.9■□□□□ 0.94
SHMT2-232ENST00000557487 USP19O94966 1318 aa20.89■□□□□ 0.94
SHMT2-232ENST00000557487 CCDC27Q2M243 656 aa20.89■□□□□ 0.93
SHMT2-232ENST00000557487 CFAP70Q5T0N1 1121 aa20.89■□□□□ 0.93
SHMT2-232ENST00000557487 MROH1Q8NDA8 1641 aa20.89■□□□□ 0.93
SHMT2-232ENST00000557487 IQSEC2Q5JU85 1478 aa20.89■□□□□ 0.93
SHMT2-232ENST00000557487 PHF23Q9BUL5 403 aaPredicted RBP20.88■□□□□ 0.93
SHMT2-232ENST00000557487 SHPRHQ149N8 1683 aa20.88■□□□□ 0.93
SHMT2-232ENST00000557487 UPF2Q9HAU5 1272 aaKnown RBP20.86■□□□□ 0.93
SHMT2-232ENST00000557487 FRAT2O75474 233 aaPredicted RBP20.86■□□□□ 0.93
SHMT2-232ENST00000557487 PUS7Q96PZ0 661 aaKnown RBP20.86■□□□□ 0.93
SHMT2-232ENST00000557487 ADGRF5Q8IZF2 1346 aa20.85■□□□□ 0.93
SHMT2-232ENST00000557487 MROH2AA6NES4 1674 aa20.85■□□□□ 0.93
SHMT2-232ENST00000557487 RARSP54136 660 aaKnown RBP20.84■□□□□ 0.93
SHMT2-232ENST00000557487 DMRT2Q9Y5R5 561 aa20.84■□□□□ 0.93
SHMT2-232ENST00000557487 ADGRB3O60242 1522 aa20.84■□□□□ 0.93
SHMT2-232ENST00000557487 MORC1Q86VD1 984 aa20.84■□□□□ 0.93
SHMT2-232ENST00000557487 COG6Q9Y2V7 657 aa20.84■□□□□ 0.93
SHMT2-232ENST00000557487 NSD3Q9BZ95 1437 aa20.83■□□□□ 0.93
SHMT2-232ENST00000557487 BRPF3Q9ULD4 1205 aa20.83■□□□□ 0.93
SHMT2-232ENST00000557487 NLRP1Q9C000 1473 aa20.83■□□□□ 0.92
SHMT2-232ENST00000557487 ZC3H13Q5T200 1668 aaKnown RBP20.83■□□□□ 0.92
SHMT2-232ENST00000557487 NSD2O96028 1365 aa20.82■□□□□ 0.92
SHMT2-232ENST00000557487 CT47B1P0C2W7 299 aaPredicted RBP20.82■□□□□ 0.92
SHMT2-232ENST00000557487 CEBPAP49715 358 aaPredicted RBP20.82■□□□□ 0.92
SHMT2-232ENST00000557487 PANK1Q8TE04 598 aa20.82■□□□□ 0.92
SHMT2-232ENST00000557487 CFAP53Q96M91 514 aa20.82■□□□□ 0.92
SHMT2-232ENST00000557487 RWDD1Q9H446 243 aaPredicted RBP20.81■□□□□ 0.92
SHMT2-232ENST00000557487 MYH16Q9H6N6 1097 aa20.8■□□□□ 0.92
SHMT2-232ENST00000557487 RTN4Q9NQC3 1192 aaKnown RBP20.8■□□□□ 0.92
SHMT2-232ENST00000557487 C3P01024 1663 aa20.8■□□□□ 0.92
SHMT2-232ENST00000557487 CLTCQ00610 1675 aaKnown RBP20.8■□□□□ 0.92
SHMT2-232ENST00000557487 UGGT1Q9NYU2 1555 aa20.79■□□□□ 0.92
SHMT2-232ENST00000557487 RPGRIP1LQ68CZ1 1315 aa20.78■□□□□ 0.92
SHMT2-232ENST00000557487 TCP11L2Q8N4U5 519 aa20.78■□□□□ 0.92
SHMT2-232ENST00000557487 QRICH2Q9H0J4 1663 aa20.77■□□□□ 0.92
SHMT2-232ENST00000557487 NPATQ14207 1427 aa20.77■□□□□ 0.92
SHMT2-232ENST00000557487 TBC1D32Q96NH3 1257 aa20.77■□□□□ 0.92
SHMT2-232ENST00000557487 FAM43AQ8N2R8 423 aa20.76■□□□□ 0.91
SHMT2-232ENST00000557487 C14orf93Q9H972 538 aaKnown RBP20.76■□□□□ 0.91
SHMT2-232ENST00000557487 ANO8Q9HCE9 1232 aaPredicted RBP20.76■□□□□ 0.91
SHMT2-232ENST00000557487 NOS1P29475 1434 aa20.76■□□□□ 0.91
SHMT2-232ENST00000557487 PLPPR3Q6T4P5 718 aa20.76■□□□□ 0.91
SHMT2-232ENST00000557487 ABCC3O15438 1527 aa20.75■□□□□ 0.91
SHMT2-232ENST00000557487 L1TD1Q5T7N2 865 aaKnown RBP20.75■□□□□ 0.91
SHMT2-232ENST00000557487 ADGRB1O14514 1584 aa20.75■□□□□ 0.91
SHMT2-232ENST00000557487 PPLO60437 1756 aa20.74■□□□□ 0.91
SHMT2-232ENST00000557487 ADGRB2O60241 1585 aa20.73■□□□□ 0.91
SHMT2-232ENST00000557487 SEC24BO95487 1268 aa20.73■□□□□ 0.91
SHMT2-232ENST00000557487 ANTXR1Q9H6X2 564 aa20.73■□□□□ 0.91
SHMT2-232ENST00000557487 PDZRN3Q9UPQ7 1066 aa20.72■□□□□ 0.91
SHMT2-232ENST00000557487 PCDHB15Q9Y5E8 787 aa20.72■□□□□ 0.91
SHMT2-232ENST00000557487 LMTK3Q96Q04 1460 aa20.72■□□□□ 0.91
SHMT2-232ENST00000557487 MVPQ14764 893 aaKnown RBP20.71■□□□□ 0.91
SHMT2-232ENST00000557487 SETD1BQ9UPS6 1966 aaKnown RBP20.71■□□□□ 0.91
SHMT2-232ENST00000557487 ANKRD36BQ8N2N9 1353 aa20.7■□□□□ 0.9
SHMT2-232ENST00000557487 ZKSCAN2Q63HK3 967 aa20.7■□□□□ 0.9
SHMT2-232ENST00000557487 MTHFSP49914 203 aa20.69■□□□□ 0.9
SHMT2-232ENST00000557487 ARHGAP31Q2M1Z3 1444 aa20.69■□□□□ 0.9
SHMT2-232ENST00000557487 RLBP1P12271 317 aa20.68■□□□□ 0.9
SHMT2-232ENST00000557487 SLC12A5Q9H2X9 1139 aa20.68■□□□□ 0.9
SHMT2-232ENST00000557487 PREX1Q8TCU6 1659 aa20.68■□□□□ 0.9
SHMT2-232ENST00000557487 EVC2Q86UK5 1308 aa20.68■□□□□ 0.9
SHMT2-232ENST00000557487 HDAC1Q13547 482 aaPredicted RBP20.66■□□□□ 0.9
SHMT2-232ENST00000557487 NEUROD2Q15784 382 aa20.66■□□□□ 0.9
SHMT2-232ENST00000557487 RRP7AQ9Y3A4 280 aaKnown RBP20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 129 ms