RNA–Protein interactions for RNA: ENST00000557222.5

VRK1-206, Transcript of vaccinia related kinase 1, humanhuman

TSL 5

Gene VRK1, Length 1,029 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-206ENST00000557222 KDM5AP29375 1690 aaKnown RBP13.5□□□□□ -0.25
VRK1-206ENST00000557222 OTUD5Q96G74 571 aa13.5□□□□□ -0.25
VRK1-206ENST00000557222 IDI1Q13907 227 aa13.48□□□□□ -0.25
VRK1-206ENST00000557222 RNF25Q96BH1 459 aaPredicted RBP13.48□□□□□ -0.25
VRK1-206ENST00000557222 SLC52A1Q9NWF4 448 aa13.48□□□□□ -0.25
VRK1-206ENST00000557222 IRX5P78411 483 aaPredicted RBP13.47□□□□□ -0.25
VRK1-206ENST00000557222 NOS1P29475 1434 aa13.47□□□□□ -0.25
VRK1-206ENST00000557222 EFCAB6Q5THR3 1501 aa13.46□□□□□ -0.25
VRK1-206ENST00000557222 KCNA6P17658 529 aa13.46□□□□□ -0.25
VRK1-206ENST00000557222 ADGRL2O95490 1459 aa13.46□□□□□ -0.25
VRK1-206ENST00000557222 PIK3C2BO00750 1634 aa13.46□□□□□ -0.26
VRK1-206ENST00000557222 CHIC2Q9UKJ5 165 aa13.45□□□□□ -0.26
VRK1-206ENST00000557222 FAM135BQ49AJ0 1406 aa13.45□□□□□ -0.26
VRK1-206ENST00000557222 RIOK3O14730 519 aaKnown RBP13.44□□□□□ -0.26
VRK1-206ENST00000557222 PLCG2P16885 1265 aa13.44□□□□□ -0.26
VRK1-206ENST00000557222 GOLGA2Q08379 1002 aa13.44□□□□□ -0.26
VRK1-206ENST00000557222 RPRD2Q5VT52 1461 aaKnown RBP13.43□□□□□ -0.26
VRK1-206ENST00000557222 HDGFP51858 240 aaKnown RBP13.43□□□□□ -0.26
VRK1-206ENST00000557222 TET3O43151 1660 aa13.43□□□□□ -0.26
VRK1-206ENST00000557222 MKRN3Q13064 507 aaKnown RBP13.42□□□□□ -0.26
VRK1-206ENST00000557222 OCEL1Q9H607 264 aa13.42□□□□□ -0.26
VRK1-206ENST00000557222 ECM2O94769 699 aaPredicted RBP13.41□□□□□ -0.26
VRK1-206ENST00000557222 MAMSTRQ6ZN01 415 aa13.41□□□□□ -0.26
VRK1-206ENST00000557222 TMEM94Q12767 1356 aa13.41□□□□□ -0.26
VRK1-206ENST00000557222 XIRP1Q702N8 1843 aaKnown RBP13.41□□□□□ -0.26
VRK1-206ENST00000557222 ANKRD50Q9ULJ7 1429 aa13.4□□□□□ -0.26
VRK1-206ENST00000557222 CABP2Q9NPB3 220 aa13.4□□□□□ -0.26
VRK1-206ENST00000557222 ADGRB3O60242 1522 aa13.39□□□□□ -0.27
VRK1-206ENST00000557222 PROSER2Q86WR7 435 aaPredicted RBP13.39□□□□□ -0.27
VRK1-206ENST00000557222 SLC26A8Q96RN1 970 aa13.39□□□□□ -0.27
VRK1-206ENST00000557222 NKTRP30414 1462 aaKnown RBP13.39□□□□□ -0.27
VRK1-206ENST00000557222 PLEKHG1Q9ULL1 1385 aa13.37□□□□□ -0.27
VRK1-206ENST00000557222 VGFO15240 615 aaPredicted RBP13.37□□□□□ -0.27
VRK1-206ENST00000557222 FAM50AQ14320 339 aaKnown RBP13.37□□□□□ -0.27
VRK1-206ENST00000557222 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.37□□□□□ -0.27
VRK1-206ENST00000557222 NWD1Q149M9 1564 aa13.37□□□□□ -0.27
VRK1-206ENST00000557222 SCUBE2Q9NQ36 999 aa13.36□□□□□ -0.27
VRK1-206ENST00000557222 TBX22Q9Y458 520 aa13.36□□□□□ -0.27
VRK1-206ENST00000557222 ZFYVE9O95405 1425 aa13.36□□□□□ -0.27
VRK1-206ENST00000557222 NCOA3Q9Y6Q9 1424 aa13.36□□□□□ -0.27
VRK1-206ENST00000557222 MSH6P52701 1360 aa13.34□□□□□ -0.27
VRK1-206ENST00000557222 ROCK1Q13464 1354 aa13.34□□□□□ -0.27
VRK1-206ENST00000557222 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.34□□□□□ -0.27
VRK1-206ENST00000557222 BCANQ96GW7 911 aa13.34□□□□□ -0.27
VRK1-206ENST00000557222 ZFP91Q96JP5 570 aaPredicted RBP13.34□□□□□ -0.27
VRK1-206ENST00000557222 RGS17Q9UGC6 210 aaPredicted RBP13.34□□□□□ -0.27
VRK1-206ENST00000557222 RIMS2Q9UQ26 1411 aa13.33□□□□□ -0.28
VRK1-206ENST00000557222 PDCD7Q8N8D1 485 aaKnown RBP13.33□□□□□ -0.28
VRK1-206ENST00000557222 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.33□□□□□ -0.285e-8■■■■□ 20
VRK1-206ENST00000557222 SLAIN2Q9P270 581 aa13.33□□□□□ -0.28
VRK1-206ENST00000557222 PPP1R15AO75807 674 aaPredicted RBP13.32□□□□□ -0.28
VRK1-206ENST00000557222 PIK3R4Q99570 1358 aa13.32□□□□□ -0.28
VRK1-206ENST00000557222 RGL2O15211 777 aa13.31□□□□□ -0.28
VRK1-206ENST00000557222 UNC13BO14795 1591 aa13.31□□□□□ -0.28
VRK1-206ENST00000557222 TMEM131LA2VDJ0 1609 aa13.31□□□□□ -0.28
VRK1-206ENST00000557222 GCC2Q8IWJ2 1684 aa13.31□□□□□ -0.28
VRK1-206ENST00000557222 ROBO1Q9Y6N7 1651 aa13.31□□□□□ -0.28
VRK1-206ENST00000557222 CHD2O14647 1828 aaKnown RBP13.3□□□□□ -0.28
VRK1-206ENST00000557222 EFCAB3Q8N7B9 438 aa13.29□□□□□ -0.28
VRK1-206ENST00000557222 TAOK2Q9UL54 1235 aa13.29□□□□□ -0.28
VRK1-206ENST00000557222 RBM33Q96EV2 1170 aaKnown RBP13.28□□□□□ -0.28
VRK1-206ENST00000557222 JCADQ9P266 1359 aa13.28□□□□□ -0.28
VRK1-206ENST00000557222 DIP2AQ14689 1571 aa13.28□□□□□ -0.28
VRK1-206ENST00000557222 CADPS2Q86UW7 1296 aa13.27□□□□□ -0.29
VRK1-206ENST00000557222 C19orf44Q9H6X5 657 aa13.27□□□□□ -0.29
VRK1-206ENST00000557222 POTEAQ6S8J7 498 aa13.26□□□□□ -0.29
VRK1-206ENST00000557222 ADAMTS13Q76LX8 1427 aa13.26□□□□□ -0.29
VRK1-206ENST00000557222 IQGAP3Q86VI3 1631 aa13.26□□□□□ -0.29
VRK1-206ENST00000557222 MYO5BQ9ULV0 1848 aa13.26□□□□□ -0.29
VRK1-206ENST00000557222 NUP155O75694 1391 aa13.25□□□□□ -0.29
VRK1-206ENST00000557222 CHGAP10645 457 aaKnown RBP13.25□□□□□ -0.29
VRK1-206ENST00000557222 E9PCH4 1651 aa13.24□□□□□ -0.29
VRK1-206ENST00000557222 SPATA31A6Q5VVP1 1343 aa13.23□□□□□ -0.29
VRK1-206ENST00000557222 PHLPP1O60346 1717 aa13.23□□□□□ -0.29
VRK1-206ENST00000557222 ATF3P18847 181 aa13.23□□□□□ -0.29
VRK1-206ENST00000557222 DPY19L2Q6NUT2 758 aa13.22□□□□□ -0.29
VRK1-206ENST00000557222 C14orf37Q86TY3 774 aa13.22□□□□□ -0.29
VRK1-206ENST00000557222 BCL11BQ9C0K0 894 aaPredicted RBP13.22□□□□□ -0.29
VRK1-206ENST00000557222 TRPM2O94759 1503 aa13.22□□□□□ -0.29
VRK1-206ENST00000557222 L3MBTL3Q96JM7 780 aaPredicted RBP13.21□□□□□ -0.29
VRK1-206ENST00000557222 AMOTL2Q9Y2J4 779 aa13.21□□□□□ -0.29
VRK1-206ENST00000557222 DCCP43146 1447 aa13.21□□□□□ -0.3
VRK1-206ENST00000557222 COL16A1Q07092 1604 aaPredicted RBP13.2□□□□□ -0.3
VRK1-206ENST00000557222 AHDC1Q5TGY3 1603 aaPredicted RBP13.2□□□□□ -0.3
VRK1-206ENST00000557222 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.19□□□□□ -0.3
VRK1-206ENST00000557222 NUTM2DQ5VT03 806 aaPredicted RBP13.19□□□□□ -0.3
VRK1-206ENST00000557222 STK24Q9Y6E0 443 aa13.19□□□□□ -0.3
VRK1-206ENST00000557222 STK25O00506 426 aa13.18□□□□□ -0.3
VRK1-206ENST00000557222 SOX12O15370 315 aa13.18□□□□□ -0.3
VRK1-206ENST00000557222 ZNF772Q68DY9 489 aaPredicted RBP13.18□□□□□ -0.3
VRK1-206ENST00000557222 SLAIN1Q8ND83 568 aa13.18□□□□□ -0.3
VRK1-206ENST00000557222 PTPRUQ92729 1446 aa13.18□□□□□ -0.3
VRK1-206ENST00000557222 SETBP1Q9Y6X0 1596 aa13.17□□□□□ -0.3
VRK1-206ENST00000557222 BRINP3Q76B58 766 aa13.16□□□□□ -0.3
VRK1-206ENST00000557222 ITGAEP38570 1179 aa13.15□□□□□ -0.3
VRK1-206ENST00000557222 ZNF326Q5BKZ1 582 aaKnown RBP13.15□□□□□ -0.3
VRK1-206ENST00000557222 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.15□□□□□ -0.3
VRK1-206ENST00000557222 SHPRHQ149N8 1683 aa13.15□□□□□ -0.31
VRK1-206ENST00000557222 MEX3CQ5U5Q3 659 aaKnown RBP13.14□□□□□ -0.31
VRK1-206ENST00000557222 SETD5Q9C0A6 1442 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms