RNA–Protein interactions for RNA: ENST00000556907.1

PCNX4-213, Transcript of pecanex 4, humanhuman

TSL 3

Gene PCNX4, Length 495 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCNX4-213ENST00000556907 UBAP1LF5GYI3 381 aa23.25■■□□□ 1.31
PCNX4-213ENST00000556907 CARD11Q9BXL7 1154 aa23.25■■□□□ 1.31
PCNX4-213ENST00000556907 FBXO41Q8TF61 875 aa23.24■■□□□ 1.31
PCNX4-213ENST00000556907 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.24■■□□□ 1.31
PCNX4-213ENST00000556907 EIF3AQ14152 1382 aaKnown RBP23.24■■□□□ 1.31
PCNX4-213ENST00000556907 ARHGEF28Q8N1W1 1705 aaKnown RBP23.23■■□□□ 1.31
PCNX4-213ENST00000556907 PLEKHH1Q9ULM0 1364 aa23.22■■□□□ 1.31
PCNX4-213ENST00000556907 NALCNQ8IZF0 1738 aa23.22■■□□□ 1.31
PCNX4-213ENST00000556907 CENPJQ9HC77 1338 aaPredicted RBP23.19■■□□□ 1.3
PCNX4-213ENST00000556907 CDC42BPGQ6DT37 1551 aa23.18■■□□□ 1.3
PCNX4-213ENST00000556907 SLAIN2Q9P270 581 aa23.18■■□□□ 1.3
PCNX4-213ENST00000556907 ADGRB2O60241 1585 aa23.16■■□□□ 1.3
PCNX4-213ENST00000556907 SLC24A1O60721 1099 aa23.16■■□□□ 1.3
PCNX4-213ENST00000556907 SAFB2Q14151 953 aaKnown RBP eCLIP23.16■■□□□ 1.3
PCNX4-213ENST00000556907 MST1RQ04912 1400 aa23.12■■□□□ 1.29
PCNX4-213ENST00000556907 SBNO2Q9Y2G9 1366 aa23.12■■□□□ 1.29
PCNX4-213ENST00000556907 MINK1Q8N4C8 1332 aaPredicted RBP23.11■■□□□ 1.29
PCNX4-213ENST00000556907 WASLO00401 505 aaPredicted RBP23.1■■□□□ 1.29
PCNX4-213ENST00000556907 PIP4K2BP78356 416 aa23.09■■□□□ 1.29
PCNX4-213ENST00000556907 C1orf167Q5SNV9 1468 aa23.09■■□□□ 1.29
PCNX4-213ENST00000556907 QRICH2Q9H0J4 1663 aa23.09■■□□□ 1.29
PCNX4-213ENST00000556907 FMN2Q9NZ56 1722 aa23.08■■□□□ 1.29
PCNX4-213ENST00000556907 ANKARQ7Z5J8 1434 aa23.08■■□□□ 1.28
PCNX4-213ENST00000556907 SCAF1Q9H7N4 1312 aaKnown RBP23.08■■□□□ 1.28
PCNX4-213ENST00000556907 USP47Q96K76 1375 aa23.07■■□□□ 1.28
PCNX4-213ENST00000556907 HIRIP3Q9BW71 556 aaPredicted RBP23.07■■□□□ 1.28
PCNX4-213ENST00000556907 EVC2Q86UK5 1308 aa23.06■■□□□ 1.28
PCNX4-213ENST00000556907 ST20-MTHFSA0A0A6YYL1 179 aa23.04■■□□□ 1.28
PCNX4-213ENST00000556907 ROBO1Q9Y6N7 1651 aa23.03■■□□□ 1.28
PCNX4-213ENST00000556907 TULP4Q9NRJ4 1543 aa23.03■■□□□ 1.28
PCNX4-213ENST00000556907 BRINP3Q76B58 766 aa23.03■■□□□ 1.28
PCNX4-213ENST00000556907 CDK19Q9BWU1 502 aa23.03■■□□□ 1.28
PCNX4-213ENST00000556907 EIF4G2P78344 907 aaKnown RBP eCLIP23.02■■□□□ 1.28
PCNX4-213ENST00000556907 ESCO1Q5FWF5 840 aa23■■□□□ 1.27
PCNX4-213ENST00000556907 PUS7Q96PZ0 661 aaKnown RBP23■■□□□ 1.27
PCNX4-213ENST00000556907 SRPK2P78362 688 aaKnown RBP22.99■■□□□ 1.27
PCNX4-213ENST00000556907 NUTM2FA1L443 756 aa22.98■■□□□ 1.27
PCNX4-213ENST00000556907 ILDR1Q86SU0 546 aaPredicted RBP22.98■■□□□ 1.27
PCNX4-213ENST00000556907 NUDT16Q96DE0 195 aaKnown RBP22.98■■□□□ 1.27
PCNX4-213ENST00000556907 TESK2Q96S53 571 aa22.98■■□□□ 1.27
PCNX4-213ENST00000556907 ORAI2Q96SN7 254 aa22.98■■□□□ 1.27
PCNX4-213ENST00000556907 CCDC61Q9Y6R9 512 aa22.98■■□□□ 1.27
PCNX4-213ENST00000556907 ZNF316A6NFI3 1004 aaPredicted RBP22.97■■□□□ 1.27
PCNX4-213ENST00000556907 KIF1AQ12756 1690 aa22.97■■□□□ 1.27
PCNX4-213ENST00000556907 PHF8Q9UPP1 1060 aa22.96■■□□□ 1.27
PCNX4-213ENST00000556907 AHDC1Q5TGY3 1603 aaPredicted RBP22.96■■□□□ 1.27
PCNX4-213ENST00000556907 ATP7BP35670 1465 aa22.95■■□□□ 1.26
PCNX4-213ENST00000556907 TMF1P82094 1093 aa22.95■■□□□ 1.26
PCNX4-213ENST00000556907 ITSN1Q15811 1721 aa22.95■■□□□ 1.26
PCNX4-213ENST00000556907 NPHP3Q7Z494 1330 aa22.95■■□□□ 1.26
PCNX4-213ENST00000556907 USP32Q8NFA0 1604 aa22.95■■□□□ 1.26
PCNX4-213ENST00000556907 RGPD8O14715 1765 aaPredicted RBP22.94■■□□□ 1.26
PCNX4-213ENST00000556907 ATAD2Q6PL18 1390 aa22.94■■□□□ 1.26
PCNX4-213ENST00000556907 PRR36Q9H6K5 1346 aa22.94■■□□□ 1.26
PCNX4-213ENST00000556907 CDCA8Q53HL2 280 aa22.94■■□□□ 1.26
PCNX4-213ENST00000556907 HSPA5P11021 654 aaKnown RBP22.93■■□□□ 1.26
PCNX4-213ENST00000556907 CABP2Q9NPB3 220 aa22.93■■□□□ 1.26
PCNX4-213ENST00000556907 NHSL1Q5SYE7 1610 aa22.93■■□□□ 1.26
PCNX4-213ENST00000556907 PLEKHG3A1L390 1219 aa22.91■■□□□ 1.26
PCNX4-213ENST00000556907 HSPA1LP34931 641 aa22.91■■□□□ 1.26
PCNX4-213ENST00000556907 PHLPP1O60346 1717 aa22.9■■□□□ 1.26
PCNX4-213ENST00000556907 FOXO3O43524 673 aa22.89■■□□□ 1.25
PCNX4-213ENST00000556907 SOS2Q07890 1332 aaPredicted RBP22.88■■□□□ 1.25
PCNX4-213ENST00000556907 TOPAZ1Q8N9V7 1692 aa22.88■■□□□ 1.25
PCNX4-213ENST00000556907 PSME1Q06323 249 aa22.88■■□□□ 1.25
PCNX4-213ENST00000556907 LRRC59Q96AG4 307 aaKnown RBP22.88■■□□□ 1.25
PCNX4-213ENST00000556907 NGDNQ8NEJ9 315 aaKnown RBP22.87■■□□□ 1.25
PCNX4-213ENST00000556907 PPIP5K1Q6PFW1 1433 aa22.87■■□□□ 1.25
PCNX4-213ENST00000556907 PMFBP1Q8TBY8 1022 aa22.86■■□□□ 1.25
PCNX4-213ENST00000556907 NINLQ9Y2I6 1382 aa22.86■■□□□ 1.25
PCNX4-213ENST00000556907 POLR3AO14802 1390 aaPredicted RBP22.85■■□□□ 1.25
PCNX4-213ENST00000556907 COL16A1Q07092 1604 aaPredicted RBP22.84■■□□□ 1.25
PCNX4-213ENST00000556907 CABP1Q9NZU7 370 aa22.84■■□□□ 1.25
PCNX4-213ENST00000556907 KRT28Q7Z3Y7 464 aa22.83■■□□□ 1.25
PCNX4-213ENST00000556907 ZNF692Q9BU19 519 aaPredicted RBP22.83■■□□□ 1.25
PCNX4-213ENST00000556907 BRD4O60885 1362 aaPredicted RBP22.83■■□□□ 1.25
PCNX4-213ENST00000556907 MYOM1P52179 1685 aa22.83■■□□□ 1.24
PCNX4-213ENST00000556907 PXDNQ92626 1479 aa22.82■■□□□ 1.24
PCNX4-213ENST00000556907 DISP3Q9P2K9 1392 aa22.82■■□□□ 1.24
PCNX4-213ENST00000556907 ACEP12821 1306 aa22.82■■□□□ 1.24
PCNX4-213ENST00000556907 SBNO1A3KN83 1393 aa22.81■■□□□ 1.24
PCNX4-213ENST00000556907 JCADQ9P266 1359 aa22.81■■□□□ 1.24
PCNX4-213ENST00000556907 DDX17Q92841 729 aaKnown RBP22.81■■□□□ 1.24
PCNX4-213ENST00000556907 TMC1Q8TDI8 760 aa22.78■■□□□ 1.24
PCNX4-213ENST00000556907 TERF2IPQ9NYB0 399 aa22.77■■□□□ 1.24
PCNX4-213ENST00000556907 SPATA31A3Q5VYP0 1347 aa22.77■■□□□ 1.24
PCNX4-213ENST00000556907 HDGFL2Q7Z4V5 671 aaPredicted RBP22.76■■□□□ 1.23
PCNX4-213ENST00000556907 CCDC7Q96M83 1385 aa22.76■■□□□ 1.23
PCNX4-213ENST00000556907 XPCQ01831 940 aaPredicted RBP22.75■■□□□ 1.23
PCNX4-213ENST00000556907 ARHGEF10O15013 1369 aa22.75■■□□□ 1.23
PCNX4-213ENST00000556907 SHPRHQ149N8 1683 aa22.74■■□□□ 1.23
PCNX4-213ENST00000556907 CPSF1Q10570 1443 aaKnown RBP22.74■■□□□ 1.23
PCNX4-213ENST00000556907 SLC12A5Q9H2X9 1139 aa22.74■■□□□ 1.23
PCNX4-213ENST00000556907 SPATA31A6Q5VVP1 1343 aa22.74■■□□□ 1.23
PCNX4-213ENST00000556907 TNS3Q68CZ2 1445 aa22.74■■□□□ 1.23
PCNX4-213ENST00000556907 USP6P35125 1406 aa22.73■■□□□ 1.23
PCNX4-213ENST00000556907 TRPM3Q9HCF6 1732 aaPredicted RBP22.72■■□□□ 1.23
PCNX4-213ENST00000556907 PNPLA6Q8IY17 1366 aa22.72■■□□□ 1.23
PCNX4-213ENST00000556907 AKAP12Q02952 1782 aa22.71■■□□□ 1.23
PCNX4-213ENST00000556907 KTN1Q86UP2 1357 aaKnown RBP22.71■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms