RNA–Protein interactions for RNA: ENST00000555773.5

SHMT2-221, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 600 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-221ENST00000555773 CDCA8Q53HL2 280 aa17.43■□□□□ 0.38
SHMT2-221ENST00000555773 PUS7Q96PZ0 661 aaKnown RBP17.43■□□□□ 0.38
SHMT2-221ENST00000555773 HIRIP3Q9BW71 556 aaPredicted RBP17.43■□□□□ 0.38
SHMT2-221ENST00000555773 KNDC1Q76NI1 1749 aa17.43■□□□□ 0.38
SHMT2-221ENST00000555773 EVC2Q86UK5 1308 aa17.43■□□□□ 0.38
SHMT2-221ENST00000555773 RBM33Q96EV2 1170 aaKnown RBP17.42■□□□□ 0.38
SHMT2-221ENST00000555773 WASLO00401 505 aaPredicted RBP17.41■□□□□ 0.38
SHMT2-221ENST00000555773 LRRC7Q96NW7 1537 aa17.41■□□□□ 0.38
SHMT2-221ENST00000555773 CDK19Q9BWU1 502 aa17.39■□□□□ 0.37
SHMT2-221ENST00000555773 LTBP4Q8N2S1 1624 aa17.39■□□□□ 0.37
SHMT2-221ENST00000555773 ADGRL3Q9HAR2 1447 aa17.38■□□□□ 0.37
SHMT2-221ENST00000555773 MSH6P52701 1360 aa17.38■□□□□ 0.37
SHMT2-221ENST00000555773 ARHGEF28Q8N1W1 1705 aaKnown RBP17.38■□□□□ 0.37
SHMT2-221ENST00000555773 ATF3P18847 181 aa17.37■□□□□ 0.37
SHMT2-221ENST00000555773 CADPS2Q86UW7 1296 aa17.37■□□□□ 0.37
SHMT2-221ENST00000555773 STRCP1A6NGW2 1772 aa17.36■□□□□ 0.37
SHMT2-221ENST00000555773 ZNF316A6NFI3 1004 aaPredicted RBP17.36■□□□□ 0.37
SHMT2-221ENST00000555773 SRPK2P78362 688 aaKnown RBP17.36■□□□□ 0.37
SHMT2-221ENST00000555773 C11orf95C9JLR9 678 aaPredicted RBP17.34■□□□□ 0.37
SHMT2-221ENST00000555773 DCCP43146 1447 aa17.34■□□□□ 0.37
SHMT2-221ENST00000555773 CABP2Q9NPB3 220 aa17.34■□□□□ 0.37
SHMT2-221ENST00000555773 DISP3Q9P2K9 1392 aa17.33■□□□□ 0.36
SHMT2-221ENST00000555773 CERKQ8TCT0 537 aa17.33■□□□□ 0.36
SHMT2-221ENST00000555773 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.33■□□□□ 0.36
SHMT2-221ENST00000555773 NUDT16Q96DE0 195 aaKnown RBP17.32■□□□□ 0.36
SHMT2-221ENST00000555773 CCDC61Q9Y6R9 512 aa17.32■□□□□ 0.36
SHMT2-221ENST00000555773 ATAD2Q6PL18 1390 aa17.31■□□□□ 0.36
SHMT2-221ENST00000555773 ADGRB2O60241 1585 aa17.31■□□□□ 0.36
SHMT2-221ENST00000555773 QRICH2Q9H0J4 1663 aa17.3■□□□□ 0.36
SHMT2-221ENST00000555773 KIF7Q2M1P5 1343 aa17.3■□□□□ 0.36
SHMT2-221ENST00000555773 WASHC2AQ641Q2 1341 aa17.29■□□□□ 0.36
SHMT2-221ENST00000555773 SLAIN2Q9P270 581 aa17.29■□□□□ 0.36
SHMT2-221ENST00000555773 IQSEC2Q5JU85 1478 aa17.29■□□□□ 0.36
SHMT2-221ENST00000555773 ANKARQ7Z5J8 1434 aa17.29■□□□□ 0.36
SHMT2-221ENST00000555773 CCDC7Q96M83 1385 aa17.28■□□□□ 0.36
SHMT2-221ENST00000555773 TULP4Q9NRJ4 1543 aa17.28■□□□□ 0.36
SHMT2-221ENST00000555773 NUTM2FA1L443 756 aa17.28■□□□□ 0.36
SHMT2-221ENST00000555773 TOM1O60784 492 aa17.28■□□□□ 0.36
SHMT2-221ENST00000555773 CDC42BPGQ6DT37 1551 aa17.28■□□□□ 0.36
SHMT2-221ENST00000555773 PRR36Q9H6K5 1346 aa17.27■□□□□ 0.36
SHMT2-221ENST00000555773 PLEKHG3A1L390 1219 aa17.27■□□□□ 0.36
SHMT2-221ENST00000555773 POLR3GLQ9BT43 218 aa17.27■□□□□ 0.36
SHMT2-221ENST00000555773 NINLQ9Y2I6 1382 aa17.27■□□□□ 0.35
SHMT2-221ENST00000555773 TMC1Q8TDI8 760 aa17.26■□□□□ 0.35
SHMT2-221ENST00000555773 CABP1Q9NZU7 370 aa17.26■□□□□ 0.35
SHMT2-221ENST00000555773 ESCO1Q5FWF5 840 aa17.25■□□□□ 0.35
SHMT2-221ENST00000555773 C1orf167Q5SNV9 1468 aa17.24■□□□□ 0.35
SHMT2-221ENST00000555773 SLC12A5Q9H2X9 1139 aa17.24■□□□□ 0.35
SHMT2-221ENST00000555773 NALCNQ8IZF0 1738 aa17.24■□□□□ 0.35
SHMT2-221ENST00000555773 MST1RQ04912 1400 aa17.23■□□□□ 0.35
SHMT2-221ENST00000555773 ZNF692Q9BU19 519 aaPredicted RBP17.23■□□□□ 0.35
SHMT2-221ENST00000555773 TERF2IPQ9NYB0 399 aa17.23■□□□□ 0.35
SHMT2-221ENST00000555773 PHF8Q9UPP1 1060 aa17.23■□□□□ 0.35
SHMT2-221ENST00000555773 ORAI2Q96SN7 254 aa17.22■□□□□ 0.35
SHMT2-221ENST00000555773 ATP7BP35670 1465 aa17.21■□□□□ 0.35
SHMT2-221ENST00000555773 UBAP1LF5GYI3 381 aa17.21■□□□□ 0.35
SHMT2-221ENST00000555773 XIRP1Q702N8 1843 aaKnown RBP17.21■□□□□ 0.35
SHMT2-221ENST00000555773 PPIP5K1Q6PFW1 1433 aa17.21■□□□□ 0.34
SHMT2-221ENST00000555773 HDGFL2Q7Z4V5 671 aaPredicted RBP17.2■□□□□ 0.34
SHMT2-221ENST00000555773 NGDNQ8NEJ9 315 aaKnown RBP17.2■□□□□ 0.34
SHMT2-221ENST00000555773 PMFBP1Q8TBY8 1022 aa17.2■□□□□ 0.34
SHMT2-221ENST00000555773 BRINP3Q76B58 766 aa17.19■□□□□ 0.34
SHMT2-221ENST00000555773 ACEP12821 1306 aa17.19■□□□□ 0.34
SHMT2-221ENST00000555773 FMN2Q9NZ56 1722 aa17.18■□□□□ 0.34
SHMT2-221ENST00000555773 PANK3Q9H999 370 aa17.18■□□□□ 0.34
SHMT2-221ENST00000555773 DDX10Q13206 875 aaKnown RBP17.17■□□□□ 0.34
SHMT2-221ENST00000555773 POLR3AO14802 1390 aaPredicted RBP17.16■□□□□ 0.34
SHMT2-221ENST00000555773 FOXO3O43524 673 aa17.16■□□□□ 0.34
SHMT2-221ENST00000555773 PSME1Q06323 249 aa17.16■□□□□ 0.34
SHMT2-221ENST00000555773 ANKRD36BQ8N2N9 1353 aa17.15■□□□□ 0.34
SHMT2-221ENST00000555773 NPHP3Q7Z494 1330 aa17.15■□□□□ 0.34
SHMT2-221ENST00000555773 BRD4O60885 1362 aaPredicted RBP17.15■□□□□ 0.34
SHMT2-221ENST00000555773 CPSF1Q10570 1443 aaKnown RBP17.14■□□□□ 0.33
SHMT2-221ENST00000555773 USP32Q8NFA0 1604 aa17.14■□□□□ 0.33
SHMT2-221ENST00000555773 PIP4K2BP78356 416 aa17.13■□□□□ 0.33
SHMT2-221ENST00000555773 KRT28Q7Z3Y7 464 aa17.13■□□□□ 0.33
SHMT2-221ENST00000555773 CARD14Q9BXL6 1004 aa17.13■□□□□ 0.33
SHMT2-221ENST00000555773 KTN1Q86UP2 1357 aaKnown RBP17.13■□□□□ 0.33
SHMT2-221ENST00000555773 KNSTRNQ9Y448 316 aa17.12■□□□□ 0.33
SHMT2-221ENST00000555773 A0A1W2PP64 1363 aa17.12■□□□□ 0.33
SHMT2-221ENST00000555773 PER1O15534 1290 aaPredicted RBP17.11■□□□□ 0.33
SHMT2-221ENST00000555773 CD163L1Q9NR16 1453 aa17.11■□□□□ 0.33
SHMT2-221ENST00000555773 SOS2Q07890 1332 aaPredicted RBP17.09■□□□□ 0.33
SHMT2-221ENST00000555773 SCAF1Q9H7N4 1312 aaKnown RBP17.09■□□□□ 0.33
SHMT2-221ENST00000555773 USP6P35125 1406 aa17.09■□□□□ 0.33
SHMT2-221ENST00000555773 TTC21BQ7Z4L5 1316 aa17.08■□□□□ 0.32
SHMT2-221ENST00000555773 TTC21AQ8NDW8 1320 aa17.08■□□□□ 0.32
SHMT2-221ENST00000555773 ITSN1Q15811 1721 aa17.07■□□□□ 0.32
SHMT2-221ENST00000555773 TOPAZ1Q8N9V7 1692 aa17.07■□□□□ 0.32
SHMT2-221ENST00000555773 EDC4Q6P2E9 1401 aaKnown RBP17.07■□□□□ 0.32
SHMT2-221ENST00000555773 CGNL1Q0VF96 1302 aa17.07■□□□□ 0.32
SHMT2-221ENST00000555773 DDX17Q92841 729 aaKnown RBP17.07■□□□□ 0.32
SHMT2-221ENST00000555773 SSH2Q76I76 1423 aa17.06■□□□□ 0.32
SHMT2-221ENST00000555773 SBNO1A3KN83 1393 aa17.06■□□□□ 0.32
SHMT2-221ENST00000555773 PAK3O75914 559 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-221ENST00000555773 XPCQ01831 940 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-221ENST00000555773 LRRC59Q96AG4 307 aaKnown RBP17.06■□□□□ 0.32
SHMT2-221ENST00000555773 KIF1AQ12756 1690 aa17.06■□□□□ 0.32
SHMT2-221ENST00000555773 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.05■□□□□ 0.32
SHMT2-221ENST00000555773 RGPD8O14715 1765 aaPredicted RBP17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms