RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 WAPLQ7Z5K2 1190 aa19.92■□□□□ 0.78
SHMT2-219ENST00000555563 BRINP3Q76B58 766 aa19.91■□□□□ 0.78
SHMT2-219ENST00000555563 SIN3AQ96ST3 1273 aa19.91■□□□□ 0.78
SHMT2-219ENST00000555563 KIAA1210Q9ULL0 1709 aa19.9■□□□□ 0.78
SHMT2-219ENST00000555563 C1orf167Q5SNV9 1468 aa19.9■□□□□ 0.78
SHMT2-219ENST00000555563 NHSL1Q5SYE7 1610 aa19.9■□□□□ 0.78
SHMT2-219ENST00000555563 SIRT1Q96EB6 747 aa19.87■□□□□ 0.77
SHMT2-219ENST00000555563 ARHGEF28Q8N1W1 1705 aaKnown RBP19.87■□□□□ 0.77
SHMT2-219ENST00000555563 FMN2Q9NZ56 1722 aa19.87■□□□□ 0.77
SHMT2-219ENST00000555563 NEUROD1Q13562 356 aa19.86■□□□□ 0.77
SHMT2-219ENST00000555563 L3MBTL2Q969R5 705 aa19.85■□□□□ 0.77
SHMT2-219ENST00000555563 PRAM1Q96QH2 718 aa19.85■□□□□ 0.77
SHMT2-219ENST00000555563 RGS17Q9UGC6 210 aaPredicted RBP19.85■□□□□ 0.77
SHMT2-219ENST00000555563 ADGRB2O60241 1585 aa19.85■□□□□ 0.77
SHMT2-219ENST00000555563 TRAK1Q9UPV9 953 aa19.83■□□□□ 0.77
SHMT2-219ENST00000555563 SAFB2Q14151 953 aaKnown RBP eCLIP19.82■□□□□ 0.76
SHMT2-219ENST00000555563 JCADQ9P266 1359 aa19.82■□□□□ 0.76
SHMT2-219ENST00000555563 SHPRHQ149N8 1683 aa19.81■□□□□ 0.76
SHMT2-219ENST00000555563 ORAI2Q96SN7 254 aa19.81■□□□□ 0.76
SHMT2-219ENST00000555563 TRPM1Q7Z4N2 1603 aa19.8■□□□□ 0.76
SHMT2-219ENST00000555563 POGKQ9P215 609 aa19.8■□□□□ 0.76
SHMT2-219ENST00000555563 DDX17Q92841 729 aaKnown RBP19.79■□□□□ 0.76
SHMT2-219ENST00000555563 NUTM2FA1L443 756 aa19.78■□□□□ 0.76
SHMT2-219ENST00000555563 NBPF1Q3BBV0 1214 aa19.77■□□□□ 0.76
SHMT2-219ENST00000555563 PCGF6Q9BYE7 350 aa19.77■□□□□ 0.76
SHMT2-219ENST00000555563 KIF1AQ12756 1690 aa19.77■□□□□ 0.76
SHMT2-219ENST00000555563 USP32Q8NFA0 1604 aa19.76■□□□□ 0.75
SHMT2-219ENST00000555563 RGPD8O14715 1765 aaPredicted RBP19.75■□□□□ 0.75
SHMT2-219ENST00000555563 ESCO1Q5FWF5 840 aa19.75■□□□□ 0.75
SHMT2-219ENST00000555563 MINK1Q8N4C8 1332 aaPredicted RBP19.75■□□□□ 0.75
SHMT2-219ENST00000555563 TONSLQ96HA7 1378 aa19.74■□□□□ 0.75
SHMT2-219ENST00000555563 LRP6O75581 1613 aa19.74■□□□□ 0.75
SHMT2-219ENST00000555563 HIRIP3Q9BW71 556 aaPredicted RBP19.74■□□□□ 0.75
SHMT2-219ENST00000555563 POTEAQ6S8J7 498 aa19.73■□□□□ 0.75
SHMT2-219ENST00000555563 ANKARQ7Z5J8 1434 aa19.73■□□□□ 0.75
SHMT2-219ENST00000555563 PXDNQ92626 1479 aa19.73■□□□□ 0.75
SHMT2-219ENST00000555563 TULP4Q9NRJ4 1543 aa19.72■□□□□ 0.75
SHMT2-219ENST00000555563 SOS2Q07890 1332 aaPredicted RBP19.72■□□□□ 0.75
SHMT2-219ENST00000555563 SPATA31A6Q5VVP1 1343 aa19.71■□□□□ 0.75
SHMT2-219ENST00000555563 PNPLA6Q8IY17 1366 aa19.7■□□□□ 0.74
SHMT2-219ENST00000555563 NPHP3Q7Z494 1330 aa19.7■□□□□ 0.74
SHMT2-219ENST00000555563 ROCK2O75116 1388 aaKnown RBP19.7■□□□□ 0.74
SHMT2-219ENST00000555563 QRICH2Q9H0J4 1663 aa19.69■□□□□ 0.74
SHMT2-219ENST00000555563 NBPF8Q3BBV2 869 aa19.69■□□□□ 0.74
SHMT2-219ENST00000555563 LRRC59Q96AG4 307 aaKnown RBP19.69■□□□□ 0.74
SHMT2-219ENST00000555563 EIF3AQ14152 1382 aaKnown RBP19.69■□□□□ 0.74
SHMT2-219ENST00000555563 FOXO3O43524 673 aa19.68■□□□□ 0.74
SHMT2-219ENST00000555563 WASLO00401 505 aaPredicted RBP19.67■□□□□ 0.74
SHMT2-219ENST00000555563 XPCQ01831 940 aaPredicted RBP19.67■□□□□ 0.74
SHMT2-219ENST00000555563 ATP7BP35670 1465 aa19.67■□□□□ 0.74
SHMT2-219ENST00000555563 RALGAPBQ86X10 1494 aa19.67■□□□□ 0.74
SHMT2-219ENST00000555563 PRR36Q9H6K5 1346 aa19.66■□□□□ 0.74
SHMT2-219ENST00000555563 COL22A1Q8NFW1 1626 aaPredicted RBP19.65■□□□□ 0.74
SHMT2-219ENST00000555563 ITSN1Q15811 1721 aa19.65■□□□□ 0.74
SHMT2-219ENST00000555563 PHF8Q9UPP1 1060 aa19.65■□□□□ 0.74
SHMT2-219ENST00000555563 CENPJQ9HC77 1338 aaPredicted RBP19.65■□□□□ 0.74
SHMT2-219ENST00000555563 GPRASP1Q5JY77 1395 aa19.65■□□□□ 0.74
SHMT2-219ENST00000555563 TOPAZ1Q8N9V7 1692 aa19.64■□□□□ 0.73
SHMT2-219ENST00000555563 NUTM2BA6NNL0 878 aaPredicted RBP19.63■□□□□ 0.73
SHMT2-219ENST00000555563 NUTM2EB1AL46 878 aaPredicted RBP19.63■□□□□ 0.73
SHMT2-219ENST00000555563 NUTM2AQ8IVF1 878 aaPredicted RBP19.63■□□□□ 0.73
SHMT2-219ENST00000555563 MEX3CQ5U5Q3 659 aaKnown RBP19.6■□□□□ 0.73
SHMT2-219ENST00000555563 PMFBP1Q8TBY8 1022 aa19.6■□□□□ 0.73
SHMT2-219ENST00000555563 TRPM3Q9HCF6 1732 aaPredicted RBP19.59■□□□□ 0.73
SHMT2-219ENST00000555563 CLSPNQ9HAW4 1339 aa19.59■□□□□ 0.73
SHMT2-219ENST00000555563 CDK19Q9BWU1 502 aa19.59■□□□□ 0.73
SHMT2-219ENST00000555563 TNS3Q68CZ2 1445 aa19.59■□□□□ 0.73
SHMT2-219ENST00000555563 KRT28Q7Z3Y7 464 aa19.58■□□□□ 0.72
SHMT2-219ENST00000555563 SPATA31A3Q5VYP0 1347 aa19.57■□□□□ 0.72
SHMT2-219ENST00000555563 NUDT16Q96DE0 195 aaKnown RBP19.57■□□□□ 0.72
SHMT2-219ENST00000555563 CARD11Q9BXL7 1154 aa19.56■□□□□ 0.72
SHMT2-219ENST00000555563 SBNO1A3KN83 1393 aa19.56■□□□□ 0.72
SHMT2-219ENST00000555563 ABCA3Q99758 1704 aa19.54■□□□□ 0.72
SHMT2-219ENST00000555563 PSME1Q06323 249 aa19.54■□□□□ 0.72
SHMT2-219ENST00000555563 ALS2Q96Q42 1657 aa19.54■□□□□ 0.72
SHMT2-219ENST00000555563 SRPK2P78362 688 aaKnown RBP19.53■□□□□ 0.72
SHMT2-219ENST00000555563 MARF1Q9Y4F3 1742 aaKnown RBP19.53■□□□□ 0.72
SHMT2-219ENST00000555563 ADAMTS2O95450 1211 aa19.52■□□□□ 0.72
SHMT2-219ENST00000555563 NGDNQ8NEJ9 315 aaKnown RBP19.52■□□□□ 0.72
SHMT2-219ENST00000555563 ZNF772Q68DY9 489 aaPredicted RBP19.51■□□□□ 0.71
SHMT2-219ENST00000555563 CCER1Q8TC90 406 aaPredicted RBP19.51■□□□□ 0.71
SHMT2-219ENST00000555563 C8orf37Q96NL8 207 aa19.51■□□□□ 0.71
SHMT2-219ENST00000555563 CABP2Q9NPB3 220 aa19.51■□□□□ 0.71
SHMT2-219ENST00000555563 CCDC61Q9Y6R9 512 aa19.51■□□□□ 0.71
SHMT2-219ENST00000555563 POLR3AO14802 1390 aaPredicted RBP19.51■□□□□ 0.71
SHMT2-219ENST00000555563 ARHGEF10O15013 1369 aa19.51■□□□□ 0.71
SHMT2-219ENST00000555563 PPIP5K1Q6PFW1 1433 aa19.51■□□□□ 0.71
SHMT2-219ENST00000555563 EVC2Q86UK5 1308 aa19.51■□□□□ 0.71
SHMT2-219ENST00000555563 SBNO2Q9Y2G9 1366 aa19.5■□□□□ 0.71
SHMT2-219ENST00000555563 AFF2P51816 1311 aa19.5■□□□□ 0.71
SHMT2-219ENST00000555563 LMOD2Q6P5Q4 547 aa19.48■□□□□ 0.71
SHMT2-219ENST00000555563 ACEP12821 1306 aa19.48■□□□□ 0.71
SHMT2-219ENST00000555563 PLEKHG3A1L390 1219 aa19.47■□□□□ 0.71
SHMT2-219ENST00000555563 TIMELESSQ9UNS1 1208 aa19.47■□□□□ 0.71
SHMT2-219ENST00000555563 CRYBG1Q9Y4K1 1723 aa19.47■□□□□ 0.71
SHMT2-219ENST00000555563 PLEKHG5O94827 1062 aa19.44■□□□□ 0.7
SHMT2-219ENST00000555563 CABLES1Q8TDN4 633 aa19.44■□□□□ 0.7
SHMT2-219ENST00000555563 NGLY1Q96IV0 654 aa19.44■□□□□ 0.7
SHMT2-219ENST00000555563 PAK3O75914 559 aaPredicted RBP19.43■□□□□ 0.7
SHMT2-219ENST00000555563 UPF1Q92900 1129 aaKnown RBP eCLIP19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms