RNA–Protein interactions for RNA: ENST00000555535.1

SRP54-207, Transcript of signal recognition particle 54, humanhuman

TSL 4

Gene SRP54, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-207ENST00000555535 KCNV2Q8TDN2 545 aa10.49□□□□□ -0.73
SRP54-207ENST00000555535 SLC16A10Q8TF71 515 aa10.49□□□□□ -0.73
SRP54-207ENST00000555535 GCGRP47871 477 aa10.47□□□□□ -0.73
SRP54-207ENST00000555535 TRIM32Q13049 653 aa10.47□□□□□ -0.73
SRP54-207ENST00000555535 DDX11L8A8MPP1 907 aa10.46□□□□□ -0.73
SRP54-207ENST00000555535 Q3C1V9 767 aa10.46□□□□□ -0.73
SRP54-207ENST00000555535 P3H3Q8IVL6 736 aa10.45□□□□□ -0.74
SRP54-207ENST00000555535 MRGPRX2Q96LB1 330 aa10.45□□□□□ -0.74
SRP54-207ENST00000555535 PRDM9Q9NQV7 894 aa10.45□□□□□ -0.74
SRP54-207ENST00000555535 FECHP22830 423 aa10.44□□□□□ -0.74
SRP54-207ENST00000555535 NPAS3Q8IXF0 933 aa10.43□□□□□ -0.74
SRP54-207ENST00000555535 J3QL48 77 aa10.42□□□□□ -0.74
SRP54-207ENST00000555535 MMP16P51512 607 aa10.42□□□□□ -0.74
SRP54-207ENST00000555535 LCE2CQ5TA81 110 aa10.42□□□□□ -0.74
SRP54-207ENST00000555535 GNPATO15228 680 aa10.4□□□□□ -0.74
SRP54-207ENST00000555535 NXF1Q9UBU9 619 aaKnown RBP10.4□□□□□ -0.74
SRP54-207ENST00000555535 HPS1Q92902 700 aa10.39□□□□□ -0.75
SRP54-207ENST00000555535 IRF7Q92985 503 aa10.39□□□□□ -0.75
SRP54-207ENST00000555535 WNT7BP56706 349 aa10.38□□□□□ -0.75
SRP54-207ENST00000555535 SMYD5Q6GMV2 418 aa10.38□□□□□ -0.75
SRP54-207ENST00000555535 RNF19BQ6ZMZ0 732 aa10.38□□□□□ -0.75
SRP54-207ENST00000555535 ZSCAN1Q8NBB4 408 aa10.38□□□□□ -0.75
SRP54-207ENST00000555535 RC3H1Q5TC82 1133 aaKnown RBP10.35□□□□□ -0.75
SRP54-207ENST00000555535 USB1Q9BQ65 265 aaKnown RBP10.35□□□□□ -0.75
SRP54-207ENST00000555535 SEMA3EO15041 775 aa10.34□□□□□ -0.75
SRP54-207ENST00000555535 DXOO77932 396 aaKnown RBP10.34□□□□□ -0.75
SRP54-207ENST00000555535 LOC100996750A0A140TA64 210 aa10.32□□□□□ -0.76
SRP54-207ENST00000555535 GMPRP36959 345 aa10.32□□□□□ -0.76
SRP54-207ENST00000555535 KRTAP4-6Q9BYQ5 205 aa10.32□□□□□ -0.76
SRP54-207ENST00000555535 AMER1Q5JTC6 1135 aaPredicted RBP10.31□□□□□ -0.76
SRP54-207ENST00000555535 ALDH1A1P00352 501 aa10.3□□□□□ -0.76
SRP54-207ENST00000555535 USP46P62068 366 aa10.28□□□□□ -0.76
SRP54-207ENST00000555535 CCDC24Q8N4L8 307 aa10.28□□□□□ -0.76
SRP54-207ENST00000555535 TSHZ2Q9NRE2 1034 aa10.28□□□□□ -0.76
SRP54-207ENST00000555535 H3BM21 787 aa10.27□□□□□ -0.77
SRP54-207ENST00000555535 RBM26Q5T8P6 1007 aaKnown RBP10.27□□□□□ -0.77
SRP54-207ENST00000555535 SKOR1P84550 965 aa10.26□□□□□ -0.77
SRP54-207ENST00000555535 NLRP7Q8WX94 980 aa10.26□□□□□ -0.77
SRP54-207ENST00000555535 TESPA1A2RU30 521 aaPredicted RBP10.25□□□□□ -0.77
SRP54-207ENST00000555535 CAPN5O15484 640 aaPredicted RBP10.25□□□□□ -0.77
SRP54-207ENST00000555535 KDM4AO75164 1064 aa10.25□□□□□ -0.77
SRP54-207ENST00000555535 LORP23490 312 aaPredicted RBP10.25□□□□□ -0.77
SRP54-207ENST00000555535 WASF2Q9Y6W5 498 aa10.25□□□□□ -0.77
SRP54-207ENST00000555535 GPR37O15354 613 aa10.24□□□□□ -0.77
SRP54-207ENST00000555535 CD46P15529 392 aa10.23□□□□□ -0.77
SRP54-207ENST00000555535 EHBP1Q8NDI1 1231 aa10.23□□□□□ -0.77
SRP54-207ENST00000555535 PHOX2BQ99453 314 aa10.23□□□□□ -0.77
SRP54-207ENST00000555535 TRIM46Q7Z4K8 759 aa10.22□□□□□ -0.77
SRP54-207ENST00000555535 SIAH2O43255 324 aa10.21□□□□□ -0.77
SRP54-207ENST00000555535 BMP1P13497 986 aa10.21□□□□□ -0.77
SRP54-207ENST00000555535 JUNDP17535 347 aa10.2□□□□□ -0.78
SRP54-207ENST00000555535 ERBB4Q15303 1308 aa10.16□□□□□ -0.78
SRP54-207ENST00000555535 VEGFBP49765 207 aa10.16□□□□□ -0.78
SRP54-207ENST00000555535 NUDT12Q9BQG2 462 aa10.16□□□□□ -0.78
SRP54-207ENST00000555535 PLEKHG3A1L390 1219 aa10.14□□□□□ -0.79
SRP54-207ENST00000555535 HOXA2O43364 376 aa10.14□□□□□ -0.79
SRP54-207ENST00000555535 VSIG8P0DPA2 414 aa10.14□□□□□ -0.79
SRP54-207ENST00000555535 SCARF1Q14162 830 aa10.14□□□□□ -0.79
SRP54-207ENST00000555535 SUZ12Q15022 739 aaKnown RBP10.14□□□□□ -0.79
SRP54-207ENST00000555535 ZFP42Q96MM3 310 aa10.14□□□□□ -0.79
SRP54-207ENST00000555535 RETREG3Q86VR2 466 aa10.13□□□□□ -0.79
SRP54-207ENST00000555535 GPIHBP1Q8IV16 184 aa10.13□□□□□ -0.79
SRP54-207ENST00000555535 KCNMA1Q12791 1236 aa10.11□□□□□ -0.79
SRP54-207ENST00000555535 MPNDQ8N594 471 aa10.11□□□□□ -0.79
SRP54-207ENST00000555535 MRPL14Q6P1L8 145 aaKnown RBP10.1□□□□□ -0.79
SRP54-207ENST00000555535 SH3BP2P78314 561 aa10.09□□□□□ -0.79
SRP54-207ENST00000555535 CCNYL3P0C7X3 344 aa10.08□□□□□ -0.8
SRP54-207ENST00000555535 MAP2K5Q13163 448 aa10.08□□□□□ -0.8
SRP54-207ENST00000555535 PTCRAQ6ISU1 281 aaPredicted RBP10.08□□□□□ -0.8
SRP54-207ENST00000555535 VARSP26640 1264 aaKnown RBP10.07□□□□□ -0.8
SRP54-207ENST00000555535 HLA-CQ95604 372 aa10.07□□□□□ -0.8
SRP54-207ENST00000555535 ADH1CP00326 375 aa10.06□□□□□ -0.8
SRP54-207ENST00000555535 MS4A1P11836 297 aa10.06□□□□□ -0.8
SRP54-207ENST00000555535 NNTQ13423 1086 aa10.05□□□□□ -0.8
SRP54-207ENST00000555535 NUTM1Q86Y26 1132 aa10.05□□□□□ -0.8
SRP54-207ENST00000555535 RNF225M0QZC1 329 aaPredicted RBP10.04□□□□□ -0.8
SRP54-207ENST00000555535 PTPRNQ16849 979 aa10.04□□□□□ -0.8
SRP54-207ENST00000555535 RTN4Q9NQC3 1192 aaKnown RBP10.04□□□□□ -0.8
SRP54-207ENST00000555535 MDM2Q00987 491 aaPredicted RBP10.03□□□□□ -0.8
SRP54-207ENST00000555535 PURBQ96QR8 312 aaKnown RBP10.03□□□□□ -0.8
SRP54-207ENST00000555535 UNC93B1Q9H1C4 597 aa10.03□□□□□ -0.8
SRP54-207ENST00000555535 TMEM151AQ8N4L1 468 aa10.02□□□□□ -0.81
SRP54-207ENST00000555535 SYMPKQ92797 1274 aaKnown RBP10.02□□□□□ -0.81
SRP54-207ENST00000555535 EVA1BQ9NVM1 165 aa10.02□□□□□ -0.81
SRP54-207ENST00000555535 IRF6O14896 467 aa10.01□□□□□ -0.81
SRP54-207ENST00000555535 CLCN1P35523 988 aa10.01□□□□□ -0.81
SRP54-207ENST00000555535 WDR4P57081 412 aaKnown RBP10.01□□□□□ -0.81
SRP54-207ENST00000555535 GUCA2AQ02747 115 aa10.01□□□□□ -0.81
SRP54-207ENST00000555535 KCTD17Q8N5Z5 321 aa10.01□□□□□ -0.81
SRP54-207ENST00000555535 TLL2Q9Y6L7 1015 aa10.01□□□□□ -0.81
SRP54-207ENST00000555535 C6orf229H3BNL8 230 aa10□□□□□ -0.81
SRP54-207ENST00000555535 TIMP2P16035 220 aa10□□□□□ -0.81
SRP54-207ENST00000555535 ZNF511Q8NB15 262 aa10□□□□□ -0.81
SRP54-207ENST00000555535 GPCPD1Q9NPB8 672 aa10□□□□□ -0.81
SRP54-207ENST00000555535 MINK1Q8N4C8 1332 aaPredicted RBP10□□□□□ -0.81
SRP54-207ENST00000555535 MAN1A2O60476 641 aa9.99□□□□□ -0.81
SRP54-207ENST00000555535 FDX1P10109 184 aa9.99□□□□□ -0.81
SRP54-207ENST00000555535 KCNH2Q12809 1159 aa9.99□□□□□ -0.81
SRP54-207ENST00000555535 BAP1Q92560 729 aa9.99□□□□□ -0.81
SRP54-207ENST00000555535 FAM174AQ8TBP5 190 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms