RNA–Protein interactions for RNA: ENST00000554439.5

PRPF39-207, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 2,982 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-207ENST00000554439 NPDC1Q9NQX5 325 aaPredicted RBP3.63□□□□□ -1.83
PRPF39-207ENST00000554439 SH3D19Q5HYK7 790 aa3.63□□□□□ -1.83
PRPF39-207ENST00000554439 UPF1Q92900 1129 aaKnown RBP eCLIP3.63□□□□□ -1.83
PRPF39-207ENST00000554439 POM121Q96HA1 1249 aa3.63□□□□□ -1.83
PRPF39-207ENST00000554439 ARAP1Q96P48 1450 aa3.63□□□□□ -1.83
PRPF39-207ENST00000554439 BAZ1BQ9UIG0 1483 aaKnown RBP3.63□□□□□ -1.83
PRPF39-207ENST00000554439 TJAP1Q5JTD0 557 aa3.63□□□□□ -1.83
PRPF39-207ENST00000554439 TRIM52Q96A61 297 aa3.63□□□□□ -1.83
PRPF39-207ENST00000554439 WBP1LQ9NX94 342 aa3.63□□□□□ -1.83
PRPF39-207ENST00000554439 RBM19Q9Y4C8 960 aaKnown RBP3.63□□□□□ -1.83
PRPF39-207ENST00000554439 PPP1R3GB7ZBB8 358 aa3.62□□□□□ -1.83
PRPF39-207ENST00000554439 TERTO14746 1132 aaKnown RBP3.62□□□□□ -1.83
PRPF39-207ENST00000554439 PDIA4P13667 645 aaKnown RBP3.62□□□□□ -1.83
PRPF39-207ENST00000554439 BCAMP50895 628 aa3.62□□□□□ -1.83
PRPF39-207ENST00000554439 PCMTD1Q96MG8 357 aaPredicted RBP3.62□□□□□ -1.83
PRPF39-207ENST00000554439 AAASQ9NRG9 546 aa3.62□□□□□ -1.83
PRPF39-207ENST00000554439 FOSBP53539 338 aa3.62□□□□□ -1.83
PRPF39-207ENST00000554439 CTC1Q2NKJ3 1217 aa3.62□□□□□ -1.83
PRPF39-207ENST00000554439 SIN3AQ96ST3 1273 aa3.62□□□□□ -1.83
PRPF39-207ENST00000554439 CDHR5Q9HBB8 845 aa3.62□□□□□ -1.83
PRPF39-207ENST00000554439 FBXO31Q5XUX0 539 aaPredicted RBP3.61□□□□□ -1.83
PRPF39-207ENST00000554439 ZNF454Q8N9F8 522 aa3.61□□□□□ -1.83
PRPF39-207ENST00000554439 PSMG3-AS1Q96PY0 264 aa3.61□□□□□ -1.83
PRPF39-207ENST00000554439 EVI5O60447 810 aa3.61□□□□□ -1.83
PRPF39-207ENST00000554439 PROSER2Q86WR7 435 aaPredicted RBP3.61□□□□□ -1.83
PRPF39-207ENST00000554439 SLC16A10Q8TF71 515 aa3.61□□□□□ -1.83
PRPF39-207ENST00000554439 RRBP1Q9P2E9 1410 aaKnown RBP3.61□□□□□ -1.83
PRPF39-207ENST00000554439 WDR97A6NE52 1622 aa3.6□□□□□ -1.83
PRPF39-207ENST00000554439 MAPKBP1O60336 1514 aa3.6□□□□□ -1.83
PRPF39-207ENST00000554439 CCNB3Q8WWL7 1395 aa3.6□□□□□ -1.83
PRPF39-207ENST00000554439 RAB3GAP2Q9H2M9 1393 aa3.6□□□□□ -1.83
PRPF39-207ENST00000554439 SKIV2LQ15477 1246 aaKnown RBP3.6□□□□□ -1.83
PRPF39-207ENST00000554439 ZNF598Q86UK7 904 aaKnown RBP3.6□□□□□ -1.83
PRPF39-207ENST00000554439 PROCA1Q8NCQ7 364 aaPredicted RBP3.6□□□□□ -1.83
PRPF39-207ENST00000554439 JPH4Q96JJ6 628 aa3.6□□□□□ -1.83
PRPF39-207ENST00000554439 ZFRQ96KR1 1074 aaKnown RBP3.6□□□□□ -1.83
PRPF39-207ENST00000554439 KRTAP9-2Q9BYQ4 174 aa3.6□□□□□ -1.83
PRPF39-207ENST00000554439 ZNF777Q9ULD5 760 aaPredicted RBP3.6□□□□□ -1.83
PRPF39-207ENST00000554439 SMCPP49901 116 aaPredicted RBP3.6□□□□□ -1.83
PRPF39-207ENST00000554439 NPAS3Q8IXF0 933 aa3.6□□□□□ -1.83
PRPF39-207ENST00000554439 GNL3Q9BVP2 549 aaKnown RBP eCLIP3.6□□□□□ -1.83
PRPF39-207ENST00000554439 GPCPD1Q9NPB8 672 aa3.6□□□□□ -1.83
PRPF39-207ENST00000554439 CDKN2AIPQ9NXV6 580 aaPredicted RBP3.6□□□□□ -1.83
PRPF39-207ENST00000554439 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.6□□□□□ -1.83
PRPF39-207ENST00000554439 IRX6P78412 446 aaPredicted RBP3.6□□□□□ -1.83
PRPF39-207ENST00000554439 KRTAP1-3Q8IUG1 177 aa3.6□□□□□ -1.83
PRPF39-207ENST00000554439 LRCH3Q96II8 777 aa3.6□□□□□ -1.83
PRPF39-207ENST00000554439 PPP1R15AO75807 674 aaPredicted RBP3.59□□□□□ -1.83
PRPF39-207ENST00000554439 SSTR3P32745 418 aaPredicted RBP3.59□□□□□ -1.83
PRPF39-207ENST00000554439 EN1Q05925 392 aaPredicted RBP3.59□□□□□ -1.83
PRPF39-207ENST00000554439 TRIM67Q6ZTA4 783 aa3.59□□□□□ -1.83
PRPF39-207ENST00000554439 CUX2O14529 1486 aa3.59□□□□□ -1.83
PRPF39-207ENST00000554439 ZBTB7CA1YPR0 619 aa3.59□□□□□ -1.84
PRPF39-207ENST00000554439 BTBD11A6QL63 1104 aa3.59□□□□□ -1.84
PRPF39-207ENST00000554439 NEFLP07196 543 aa3.59□□□□□ -1.84
PRPF39-207ENST00000554439 CLCN1P35523 988 aa3.59□□□□□ -1.84
PRPF39-207ENST00000554439 MDM2Q00987 491 aaPredicted RBP3.59□□□□□ -1.84
PRPF39-207ENST00000554439 HPS5Q9UPZ3 1129 aa3.59□□□□□ -1.84
PRPF39-207ENST00000554439 PRXQ9BXM0 1461 aa3.59□□□□□ -1.84
PRPF39-207ENST00000554439 KRTAP9-6A0A140TA67 174 aa3.58□□□□□ -1.84
PRPF39-207ENST00000554439 C11orf95C9JLR9 678 aaPredicted RBP3.58□□□□□ -1.84
PRPF39-207ENST00000554439 AVPP01185 164 aa3.58□□□□□ -1.84
PRPF39-207ENST00000554439 ZDHHC16Q969W1 377 aa3.58□□□□□ -1.84
PRPF39-207ENST00000554439 TRAIPQ9BWF2 469 aa3.58□□□□□ -1.84
PRPF39-207ENST00000554439 FAM217BQ9NTX9 383 aaPredicted RBP3.58□□□□□ -1.84
PRPF39-207ENST00000554439 COG6Q9Y2V7 657 aa3.58□□□□□ -1.84
PRPF39-207ENST00000554439 TOP2BQ02880 1626 aa3.58□□□□□ -1.84
PRPF39-207ENST00000554439 BICRAQ9NZM4 1560 aa3.58□□□□□ -1.84
PRPF39-207ENST00000554439 FAM187AA6NFU0 413 aa3.58□□□□□ -1.84
PRPF39-207ENST00000554439 FAM50AQ14320 339 aaKnown RBP3.58□□□□□ -1.84
PRPF39-207ENST00000554439 TSR1Q2NL82 804 aaKnown RBP3.58□□□□□ -1.84
PRPF39-207ENST00000554439 TMEM151AQ8N4L1 468 aa3.58□□□□□ -1.84
PRPF39-207ENST00000554439 BEGAINQ9BUH8 593 aa3.58□□□□□ -1.84
PRPF39-207ENST00000554439 SENP2Q9HC62 589 aa3.58□□□□□ -1.84
PRPF39-207ENST00000554439 ARHGAP35Q9NRY4 1499 aa3.57□□□□□ -1.84
PRPF39-207ENST00000554439 ATAD2BQ9ULI0 1458 aa3.57□□□□□ -1.84
PRPF39-207ENST00000554439 SLC19A1P41440 591 aa3.57□□□□□ -1.84
PRPF39-207ENST00000554439 FAM161AQ3B820 660 aa3.57□□□□□ -1.84
PRPF39-207ENST00000554439 MYSM1Q5VVJ2 828 aa3.57□□□□□ -1.84
PRPF39-207ENST00000554439 PEG3Q9GZU2 1588 aa3.57□□□□□ -1.84
PRPF39-207ENST00000554439 FAM98CQ17RN3 349 aaKnown RBP3.57□□□□□ -1.84
PRPF39-207ENST00000554439 METTL3Q86U44 580 aaKnown RBP3.57□□□□□ -1.84
PRPF39-207ENST00000554439 KCTD17Q8N5Z5 321 aa3.57□□□□□ -1.84
PRPF39-207ENST00000554439 NLRP7Q8WX94 980 aa3.57□□□□□ -1.84
PRPF39-207ENST00000554439 POLR3EQ9NVU0 708 aa3.57□□□□□ -1.84
PRPF39-207ENST00000554439 CCDC9Q9Y3X0 531 aaKnown RBP3.57□□□□□ -1.84
PRPF39-207ENST00000554439 ERICH3Q5RHP9 1530 aa3.57□□□□□ -1.84
PRPF39-207ENST00000554439 ANP32CO43423 234 aa3.57□□□□□ -1.84
PRPF39-207ENST00000554439 PPP4CP60510 307 aa3.57□□□□□ -1.84
PRPF39-207ENST00000554439 KIFC2Q96AC6 838 aa3.57□□□□□ -1.84
PRPF39-207ENST00000554439 SNRKQ9NRH2 765 aa3.57□□□□□ -1.84
PRPF39-207ENST00000554439 SERPINA10Q9UK55 444 aa3.57□□□□□ -1.84
PRPF39-207ENST00000554439 PHLDB1Q86UU1 1377 aa3.56□□□□□ -1.84
PRPF39-207ENST00000554439 SETD5Q9C0A6 1442 aa3.56□□□□□ -1.84
PRPF39-207ENST00000554439 SPDYE5A6NIY4 337 aa3.56□□□□□ -1.84
PRPF39-207ENST00000554439 RNF225M0QZC1 329 aaPredicted RBP3.56□□□□□ -1.84
PRPF39-207ENST00000554439 PHF14O94880 888 aa3.56□□□□□ -1.84
PRPF39-207ENST00000554439 FOXK2Q01167 660 aa3.56□□□□□ -1.84
PRPF39-207ENST00000554439 PCDHGA10Q9Y5H3 936 aa3.56□□□□□ -1.84
PRPF39-207ENST00000554439 ATP1B4Q9UN42 357 aaPredicted RBP3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms