RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 KIF1BO60333 1816 aa25.53■■□□□ 1.68
VPS29-204ENST00000548259 LRPPRCP42704 1394 aaKnown RBP25.53■■□□□ 1.68
VPS29-204ENST00000548259 SRCAPQ6ZRS2 3230 aa25.53■■□□□ 1.68
VPS29-204ENST00000548259 ATRNO75882 1429 aa25.53■■□□□ 1.68
VPS29-204ENST00000548259 PPARGC1BQ86YN6 1023 aaKnown RBP25.51■■□□□ 1.67
VPS29-204ENST00000548259 SLC4A1APQ9BWU0 796 aaKnown RBP25.49■■□□□ 1.67
VPS29-204ENST00000548259 NAIPQ13075 1403 aa25.47■■□□□ 1.67
VPS29-204ENST00000548259 FOXO3O43524 673 aa25.47■■□□□ 1.67
VPS29-204ENST00000548259 MYOM2P54296 1465 aa25.47■■□□□ 1.67
VPS29-204ENST00000548259 COL22A1Q8NFW1 1626 aaPredicted RBP25.46■■□□□ 1.67
VPS29-204ENST00000548259 GJD4Q96KN9 370 aaPredicted RBP25.46■■□□□ 1.67
VPS29-204ENST00000548259 CDC42BPGQ6DT37 1551 aa25.44■■□□□ 1.66
VPS29-204ENST00000548259 BCL9LQ86UU0 1499 aa25.41■■□□□ 1.66
VPS29-204ENST00000548259 XPCQ01831 940 aaPredicted RBP25.41■■□□□ 1.66
VPS29-204ENST00000548259 PXDNQ92626 1479 aa25.4■■□□□ 1.66
VPS29-204ENST00000548259 RRBP1Q9P2E9 1410 aaKnown RBP25.39■■□□□ 1.66
VPS29-204ENST00000548259 UNC5CLQ8IV45 518 aa25.39■■□□□ 1.66
VPS29-204ENST00000548259 STK26Q9P289 416 aa25.39■■□□□ 1.66
VPS29-204ENST00000548259 NUTM2FA1L443 756 aa25.37■■□□□ 1.65
VPS29-204ENST00000548259 HAP1P54257 671 aaPredicted RBP25.37■■□□□ 1.65
VPS29-204ENST00000548259 SF3B2Q13435 895 aaKnown RBP25.37■■□□□ 1.65
VPS29-204ENST00000548259 ANKRD30BQ9BXX2 1392 aa25.35■■□□□ 1.65
VPS29-204ENST00000548259 WAPLQ7Z5K2 1190 aa25.35■■□□□ 1.65
VPS29-204ENST00000548259 EP400Q96L91 3159 aa25.34■■□□□ 1.65
VPS29-204ENST00000548259 CCDC144AA2RUR9 1427 aa25.34■■□□□ 1.65
VPS29-204ENST00000548259 TECPR2O15040 1411 aa25.34■■□□□ 1.65
VPS29-204ENST00000548259 BLMP54132 1417 aaPredicted RBP25.34■■□□□ 1.65
VPS29-204ENST00000548259 SPATA31A3Q5VYP0 1347 aa25.34■■□□□ 1.65
VPS29-204ENST00000548259 ABCC11Q96J66 1382 aa25.33■■□□□ 1.65
VPS29-204ENST00000548259 ADGRF5Q8IZF2 1346 aa25.33■■□□□ 1.64
VPS29-204ENST00000548259 PPLO60437 1756 aa25.32■■□□□ 1.64
VPS29-204ENST00000548259 RGL3Q3MIN7 710 aa25.32■■□□□ 1.64
VPS29-204ENST00000548259 PSME1Q06323 249 aa25.31■■□□□ 1.64
VPS29-204ENST00000548259 KRT28Q7Z3Y7 464 aa25.3■■□□□ 1.64
VPS29-204ENST00000548259 RALGAPBQ86X10 1494 aa25.29■■□□□ 1.64
VPS29-204ENST00000548259 SLIT2O94813 1529 aa25.28■■□□□ 1.64
VPS29-204ENST00000548259 MARF1Q9Y4F3 1742 aaKnown RBP25.27■■□□□ 1.64
VPS29-204ENST00000548259 TMEM132EQ6IEE7 984 aa25.27■■□□□ 1.64
VPS29-204ENST00000548259 CCDC9Q9Y3X0 531 aaKnown RBP25.27■■□□□ 1.64
VPS29-204ENST00000548259 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.26■■□□□ 1.63
VPS29-204ENST00000548259 VPS72Q15906 364 aa25.25■■□□□ 1.63
VPS29-204ENST00000548259 SEPT12Q8IYM1 358 aa25.25■■□□□ 1.63
VPS29-204ENST00000548259 SIRT1Q96EB6 747 aa25.25■■□□□ 1.63
VPS29-204ENST00000548259 KIF1AQ12756 1690 aa25.24■■□□□ 1.63
VPS29-204ENST00000548259 PHF8Q9UPP1 1060 aa25.24■■□□□ 1.63
VPS29-204ENST00000548259 PLEKHH1Q9ULM0 1364 aa25.23■■□□□ 1.63
VPS29-204ENST00000548259 YTHDC2Q9H6S0 1430 aaKnown RBP25.22■■□□□ 1.63
VPS29-204ENST00000548259 TNS3Q68CZ2 1445 aa25.21■■□□□ 1.63
VPS29-204ENST00000548259 SPATA31E1Q6ZUB1 1445 aa25.21■■□□□ 1.63
VPS29-204ENST00000548259 LMOD2Q6P5Q4 547 aa25.21■■□□□ 1.63
VPS29-204ENST00000548259 ARHGEF10O15013 1369 aa25.2■■□□□ 1.63
VPS29-204ENST00000548259 GLI3P10071 1580 aa25.2■■□□□ 1.62
VPS29-204ENST00000548259 DEFB132Q7Z7B7 95 aa25.2■■□□□ 1.62
VPS29-204ENST00000548259 PIK3C2GO75747 1445 aa25.2■■□□□ 1.62
VPS29-204ENST00000548259 USP32Q8NFA0 1604 aa25.19■■□□□ 1.62
VPS29-204ENST00000548259 KRT27Q7Z3Y8 459 aa25.19■■□□□ 1.62
VPS29-204ENST00000548259 SBNO1A3KN83 1393 aa25.18■■□□□ 1.62
VPS29-204ENST00000548259 DHX57Q6P158 1386 aaKnown RBP25.18■■□□□ 1.62
VPS29-204ENST00000548259 A0A0G2JS52 829 aa25.18■■□□□ 1.62
VPS29-204ENST00000548259 MYT1Q01538 1121 aa25.18■■□□□ 1.62
VPS29-204ENST00000548259 MPHOSPH9Q99550 1183 aa25.18■■□□□ 1.62
VPS29-204ENST00000548259 KNDC1Q76NI1 1749 aa25.17■■□□□ 1.62
VPS29-204ENST00000548259 ONECUT3O60422 494 aaPredicted RBP25.17■■□□□ 1.62
VPS29-204ENST00000548259 PLEKHG5O94827 1062 aa25.17■■□□□ 1.62
VPS29-204ENST00000548259 CABLES1Q8TDN4 633 aa25.17■■□□□ 1.62
VPS29-204ENST00000548259 FMN2Q9NZ56 1722 aa25.17■■□□□ 1.62
VPS29-204ENST00000548259 ACIN1Q9UKV3 1341 aaKnown RBP25.16■■□□□ 1.62
VPS29-204ENST00000548259 BAG6P46379 1132 aa25.15■■□□□ 1.62
VPS29-204ENST00000548259 C14orf93Q9H972 538 aaKnown RBP25.15■■□□□ 1.62
VPS29-204ENST00000548259 POGKQ9P215 609 aa25.12■■□□□ 1.61
VPS29-204ENST00000548259 NRXN1Q9ULB1 1477 aa25.11■■□□□ 1.61
VPS29-204ENST00000548259 PRAM1Q96QH2 718 aa25.11■■□□□ 1.61
VPS29-204ENST00000548259 SAFB2Q14151 953 aaKnown RBP eCLIP25.09■■□□□ 1.61
VPS29-204ENST00000548259 FAM83GA6ND36 823 aa25.08■■□□□ 1.61
VPS29-204ENST00000548259 IFT172Q9UG01 1749 aa25.08■■□□□ 1.61
VPS29-204ENST00000548259 NWD2Q9ULI1 1742 aa25.08■■□□□ 1.61
VPS29-204ENST00000548259 ANKARQ7Z5J8 1434 aa25.07■■□□□ 1.6
VPS29-204ENST00000548259 CFAP70Q5T0N1 1121 aa25.07■■□□□ 1.6
VPS29-204ENST00000548259 PMFBP1Q8TBY8 1022 aa25.07■■□□□ 1.6
VPS29-204ENST00000548259 GPRASP1Q5JY77 1395 aa25.06■■□□□ 1.6
VPS29-204ENST00000548259 FAM98CQ17RN3 349 aaKnown RBP25.06■■□□□ 1.6
VPS29-204ENST00000548259 EIF3AQ14152 1382 aaKnown RBP25.05■■□□□ 1.6
VPS29-204ENST00000548259 BTG4Q9NY30 223 aa25.05■■□□□ 1.6
VPS29-204ENST00000548259 BRWD3Q6RI45 1802 aa25.03■■□□□ 1.6
VPS29-204ENST00000548259 PLCH1Q4KWH8 1693 aa25.03■■□□□ 1.6
VPS29-204ENST00000548259 LRP5O75197 1615 aa25.01■■□□□ 1.59
VPS29-204ENST00000548259 PSDA5PKW4 1024 aaPredicted RBP25.01■■□□□ 1.59
VPS29-204ENST00000548259 HRCP23327 699 aa25■■□□□ 1.59
VPS29-204ENST00000548259 DLC1Q96QB1 1528 aa24.98■■□□□ 1.59
VPS29-204ENST00000548259 EN1Q05925 392 aaPredicted RBP24.96■■□□□ 1.59
VPS29-204ENST00000548259 NGDNQ8NEJ9 315 aaKnown RBP24.96■■□□□ 1.59
VPS29-204ENST00000548259 PRDM11Q9NQV5 511 aa24.96■■□□□ 1.59
VPS29-204ENST00000548259 SPATA31A5Q5VU36 1347 aa24.95■■□□□ 1.58
VPS29-204ENST00000548259 SPATA31A7Q8IWB4 1347 aa24.95■■□□□ 1.58
VPS29-204ENST00000548259 PAK3O75914 559 aaPredicted RBP24.95■■□□□ 1.58
VPS29-204ENST00000548259 HIRIP3Q9BW71 556 aaPredicted RBP24.95■■□□□ 1.58
VPS29-204ENST00000548259 RGPD8O14715 1765 aaPredicted RBP24.95■■□□□ 1.58
VPS29-204ENST00000548259 TRAK1Q9UPV9 953 aa24.94■■□□□ 1.58
VPS29-204ENST00000548259 ABCA3Q99758 1704 aa24.94■■□□□ 1.58
VPS29-204ENST00000548259 MINK1Q8N4C8 1332 aaPredicted RBP24.92■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms