RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 PLEKHH1Q9ULM0 1364 aa19.73■□□□□ 0.75
CPSF6-204ENST00000547486 ZNF772Q68DY9 489 aaPredicted RBP19.73■□□□□ 0.75
CPSF6-204ENST00000547486 SOS2Q07890 1332 aaPredicted RBP19.73■□□□□ 0.75
CPSF6-204ENST00000547486 TECPR2O15040 1411 aa19.72■□□□□ 0.75
CPSF6-204ENST00000547486 CFAP70Q5T0N1 1121 aa19.72■□□□□ 0.75
CPSF6-204ENST00000547486 IFT172Q9UG01 1749 aa19.72■□□□□ 0.75
CPSF6-204ENST00000547486 NUTM2FA1L443 756 aa19.7■□□□□ 0.74
CPSF6-204ENST00000547486 ESCO1Q5FWF5 840 aa19.7■□□□□ 0.74
CPSF6-204ENST00000547486 YTHDC2Q9H6S0 1430 aaKnown RBP19.69■□□□□ 0.74
CPSF6-204ENST00000547486 NRXN1Q9ULB1 1477 aa19.68■□□□□ 0.74
CPSF6-204ENST00000547486 SIRT1Q96EB6 747 aa19.68■□□□□ 0.74
CPSF6-204ENST00000547486 AFF2P51816 1311 aa19.68■□□□□ 0.74
CPSF6-204ENST00000547486 HRCP23327 699 aa19.67■□□□□ 0.74
CPSF6-204ENST00000547486 C8orf37Q96NL8 207 aa19.67■□□□□ 0.74
CPSF6-204ENST00000547486 LAMC1P11047 1609 aa19.66■□□□□ 0.74
CPSF6-204ENST00000547486 FOXO3O43524 673 aa19.66■□□□□ 0.74
CPSF6-204ENST00000547486 ADAMTS2O95450 1211 aa19.66■□□□□ 0.74
CPSF6-204ENST00000547486 CDC42BPGQ6DT37 1551 aa19.66■□□□□ 0.74
CPSF6-204ENST00000547486 RXRBP28702 533 aa19.65■□□□□ 0.74
CPSF6-204ENST00000547486 XPCQ01831 940 aaPredicted RBP19.65■□□□□ 0.74
CPSF6-204ENST00000547486 MYOM2P54296 1465 aa19.65■□□□□ 0.74
CPSF6-204ENST00000547486 DHX57Q6P158 1386 aaKnown RBP19.64■□□□□ 0.73
CPSF6-204ENST00000547486 NPHP3Q7Z494 1330 aa19.63■□□□□ 0.73
CPSF6-204ENST00000547486 KDM2AQ9Y2K7 1162 aa19.63■□□□□ 0.73
CPSF6-204ENST00000547486 SAFB2Q14151 953 aaKnown RBP eCLIP19.61■□□□□ 0.73
CPSF6-204ENST00000547486 DCAF11Q8TEB1 546 aa19.61■□□□□ 0.73
CPSF6-204ENST00000547486 NGLY1Q96IV0 654 aa19.61■□□□□ 0.73
CPSF6-204ENST00000547486 PRAM1Q96QH2 718 aa19.61■□□□□ 0.73
CPSF6-204ENST00000547486 QTRT2Q9H974 415 aaKnown RBP19.61■□□□□ 0.73
CPSF6-204ENST00000547486 PXDNQ92626 1479 aa19.6■□□□□ 0.73
CPSF6-204ENST00000547486 KNDC1Q76NI1 1749 aa19.59■□□□□ 0.73
CPSF6-204ENST00000547486 TRAK1Q9UPV9 953 aa19.57■□□□□ 0.72
CPSF6-204ENST00000547486 POGKQ9P215 609 aa19.56■□□□□ 0.72
CPSF6-204ENST00000547486 RBM6P78332 1123 aaKnown RBP19.55■□□□□ 0.72
CPSF6-204ENST00000547486 KRT28Q7Z3Y7 464 aa19.55■□□□□ 0.72
CPSF6-204ENST00000547486 FNBP4Q8N3X1 1017 aaPredicted RBP19.55■□□□□ 0.72
CPSF6-204ENST00000547486 UPF1Q92900 1129 aaKnown RBP eCLIP19.55■□□□□ 0.72
CPSF6-204ENST00000547486 USP21Q9UK80 565 aa19.55■□□□□ 0.72
CPSF6-204ENST00000547486 ADGRB1O14514 1584 aa19.54■□□□□ 0.72
CPSF6-204ENST00000547486 PHF8Q9UPP1 1060 aa19.54■□□□□ 0.72
CPSF6-204ENST00000547486 FMN2Q9NZ56 1722 aa19.53■□□□□ 0.72
CPSF6-204ENST00000547486 SPATA31A3Q5VYP0 1347 aa19.52■□□□□ 0.72
CPSF6-204ENST00000547486 COL22A1Q8NFW1 1626 aaPredicted RBP19.52■□□□□ 0.72
CPSF6-204ENST00000547486 STAC3Q96MF2 364 aa19.52■□□□□ 0.72
CPSF6-204ENST00000547486 CDK12Q9NYV4 1490 aaPredicted RBP19.52■□□□□ 0.72
CPSF6-204ENST00000547486 DLC1Q96QB1 1528 aa19.51■□□□□ 0.71
CPSF6-204ENST00000547486 HIRIP3Q9BW71 556 aaPredicted RBP19.51■□□□□ 0.71
CPSF6-204ENST00000547486 MINK1Q8N4C8 1332 aaPredicted RBP19.5■□□□□ 0.71
CPSF6-204ENST00000547486 PMFBP1Q8TBY8 1022 aa19.49■□□□□ 0.71
CPSF6-204ENST00000547486 TRPC5Q9UL62 973 aaPredicted RBP19.49■□□□□ 0.71
CPSF6-204ENST00000547486 RGS12O14924 1447 aa19.49■□□□□ 0.71
CPSF6-204ENST00000547486 PSME1Q06323 249 aa19.47■□□□□ 0.71
CPSF6-204ENST00000547486 BCL9LQ86UU0 1499 aa19.47■□□□□ 0.71
CPSF6-204ENST00000547486 CABLES1Q8TDN4 633 aa19.46■□□□□ 0.71
CPSF6-204ENST00000547486 PRR36Q9H6K5 1346 aa19.46■□□□□ 0.71
CPSF6-204ENST00000547486 RGPD8O14715 1765 aaPredicted RBP19.44■□□□□ 0.7
CPSF6-204ENST00000547486 ATRNO75882 1429 aa19.44■□□□□ 0.7
CPSF6-204ENST00000547486 KIF1AQ12756 1690 aa19.44■□□□□ 0.7
CPSF6-204ENST00000547486 WASLO00401 505 aaPredicted RBP19.44■□□□□ 0.7
CPSF6-204ENST00000547486 PLEKHG5O94827 1062 aa19.44■□□□□ 0.7
CPSF6-204ENST00000547486 ANKARQ7Z5J8 1434 aa19.43■□□□□ 0.7
CPSF6-204ENST00000547486 USP32Q8NFA0 1604 aa19.43■□□□□ 0.7
CPSF6-204ENST00000547486 SBNO1A3KN83 1393 aa19.43■□□□□ 0.7
CPSF6-204ENST00000547486 LMOD2Q6P5Q4 547 aa19.42■□□□□ 0.7
CPSF6-204ENST00000547486 TNS3Q68CZ2 1445 aa19.42■□□□□ 0.7
CPSF6-204ENST00000547486 ADGRB2O60241 1585 aa19.41■□□□□ 0.7
CPSF6-204ENST00000547486 NBPF1Q3BBV0 1214 aa19.41■□□□□ 0.7
CPSF6-204ENST00000547486 GJD4Q96KN9 370 aaPredicted RBP19.4■□□□□ 0.7
CPSF6-204ENST00000547486 UNC5CLQ8IV45 518 aa19.39■□□□□ 0.69
CPSF6-204ENST00000547486 SLIT2O94813 1529 aa19.37■□□□□ 0.69
CPSF6-204ENST00000547486 HAP1P54257 671 aaPredicted RBP19.37■□□□□ 0.69
CPSF6-204ENST00000547486 TULP4Q9NRJ4 1543 aa19.36■□□□□ 0.69
CPSF6-204ENST00000547486 ARHGEF10O15013 1369 aa19.36■□□□□ 0.69
CPSF6-204ENST00000547486 FAM83GA6ND36 823 aa19.36■□□□□ 0.69
CPSF6-204ENST00000547486 NUDT16Q96DE0 195 aaKnown RBP19.36■□□□□ 0.69
CPSF6-204ENST00000547486 CDK19Q9BWU1 502 aa19.36■□□□□ 0.69
CPSF6-204ENST00000547486 EIF3AQ14152 1382 aaKnown RBP19.35■□□□□ 0.69
CPSF6-204ENST00000547486 NGDNQ8NEJ9 315 aaKnown RBP19.35■□□□□ 0.69
CPSF6-204ENST00000547486 SIN3AQ96ST3 1273 aa19.35■□□□□ 0.69
CPSF6-204ENST00000547486 MARF1Q9Y4F3 1742 aaKnown RBP19.34■□□□□ 0.69
CPSF6-204ENST00000547486 GPRASP1Q5JY77 1395 aa19.34■□□□□ 0.69
CPSF6-204ENST00000547486 L3MBTL2Q969R5 705 aa19.33■□□□□ 0.68
CPSF6-204ENST00000547486 ATAD2Q6PL18 1390 aa19.32■□□□□ 0.68
CPSF6-204ENST00000547486 ARHGEF28Q8N1W1 1705 aaKnown RBP19.31■□□□□ 0.68
CPSF6-204ENST00000547486 RALGAPBQ86X10 1494 aa19.31■□□□□ 0.68
CPSF6-204ENST00000547486 PAK3O75914 559 aaPredicted RBP19.31■□□□□ 0.68
CPSF6-204ENST00000547486 VPS72Q15906 364 aa19.3■□□□□ 0.68
CPSF6-204ENST00000547486 ATP7BP35670 1465 aa19.29■□□□□ 0.68
CPSF6-204ENST00000547486 TRPM3Q9HCF6 1732 aaPredicted RBP19.29■□□□□ 0.68
CPSF6-204ENST00000547486 GLI3P10071 1580 aa19.28■□□□□ 0.68
CPSF6-204ENST00000547486 CCDC61Q9Y6R9 512 aa19.28■□□□□ 0.68
CPSF6-204ENST00000547486 NEUROD1Q13562 356 aa19.27■□□□□ 0.68
CPSF6-204ENST00000547486 NBPF8Q3BBV2 869 aa19.27■□□□□ 0.68
CPSF6-204ENST00000547486 KIAA1210Q9ULL0 1709 aa19.27■□□□□ 0.68
CPSF6-204ENST00000547486 ACEP12821 1306 aa19.26■□□□□ 0.67
CPSF6-204ENST00000547486 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.26■□□□□ 0.67
CPSF6-204ENST00000547486 PLEKHG3A1L390 1219 aa19.26■□□□□ 0.67
CPSF6-204ENST00000547486 ONECUT3O60422 494 aaPredicted RBP19.26■□□□□ 0.67
CPSF6-204ENST00000547486 SEPT12Q8IYM1 358 aa19.26■□□□□ 0.67
CPSF6-204ENST00000547486 BTG4Q9NY30 223 aa19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms