RNA–Protein interactions for RNA: ENST00000545942.5

CHD4-214, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 1 (best)

Gene CHD4, Length 1,317 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-214ENST00000545942 NUTM2EB1AL46 878 aaPredicted RBP33.48■■■□□ 2.95
CHD4-214ENST00000545942 NUTM2AQ8IVF1 878 aaPredicted RBP33.48■■■□□ 2.95
CHD4-214ENST00000545942 CDC42BPGQ6DT37 1551 aa33.47■■■□□ 2.95
CHD4-214ENST00000545942 WAPLQ7Z5K2 1190 aa33.47■■■□□ 2.95
CHD4-214ENST00000545942 C14orf93Q9H972 538 aaKnown RBP33.47■■■□□ 2.95
CHD4-214ENST00000545942 YTHDC2Q9H6S0 1430 aaKnown RBP33.46■■■□□ 2.95
CHD4-214ENST00000545942 PNPLA6Q8IY17 1366 aa33.44■■■□□ 2.94
CHD4-214ENST00000545942 LAMC1P11047 1609 aa33.44■■■□□ 2.94
CHD4-214ENST00000545942 ZNF772Q68DY9 489 aaPredicted RBP33.44■■■□□ 2.94
CHD4-214ENST00000545942 KNDC1Q76NI1 1749 aa33.43■■■□□ 2.94
CHD4-214ENST00000545942 SOS2Q07890 1332 aaPredicted RBP33.42■■■□□ 2.94
CHD4-214ENST00000545942 CFAP70Q5T0N1 1121 aa33.41■■■□□ 2.94
CHD4-214ENST00000545942 PLEKHH1Q9ULM0 1364 aa33.41■■■□□ 2.94
CHD4-214ENST00000545942 ESCO1Q5FWF5 840 aa33.39■■■□□ 2.94
CHD4-214ENST00000545942 SIRT1Q96EB6 747 aa33.39■■■□□ 2.94
CHD4-214ENST00000545942 DHX57Q6P158 1386 aaKnown RBP33.39■■■□□ 2.94
CHD4-214ENST00000545942 NPHP3Q7Z494 1330 aa33.34■■■□□ 2.93
CHD4-214ENST00000545942 NUTM2FA1L443 756 aa33.31■■■□□ 2.92
CHD4-214ENST00000545942 AFF2P51816 1311 aa33.31■■■□□ 2.92
CHD4-214ENST00000545942 DCAF11Q8TEB1 546 aa33.28■■■□□ 2.92
CHD4-214ENST00000545942 C8orf37Q96NL8 207 aa33.28■■■□□ 2.92
CHD4-214ENST00000545942 FOXO3O43524 673 aa33.28■■■□□ 2.92
CHD4-214ENST00000545942 STAC3Q96MF2 364 aa33.28■■■□□ 2.92
CHD4-214ENST00000545942 KDM2AQ9Y2K7 1162 aa33.28■■■□□ 2.92
CHD4-214ENST00000545942 PRAM1Q96QH2 718 aa33.26■■■□□ 2.91
CHD4-214ENST00000545942 PXDNQ92626 1479 aa33.25■■■□□ 2.91
CHD4-214ENST00000545942 RXRBP28702 533 aa33.25■■■□□ 2.91
CHD4-214ENST00000545942 FMN2Q9NZ56 1722 aa33.24■■■□□ 2.91
CHD4-214ENST00000545942 ADAMTS2O95450 1211 aa33.24■■■□□ 2.91
CHD4-214ENST00000545942 DLC1Q96QB1 1528 aa33.23■■■□□ 2.91
CHD4-214ENST00000545942 ADGRB1O14514 1584 aa33.22■■■□□ 2.91
CHD4-214ENST00000545942 XPCQ01831 940 aaPredicted RBP33.22■■■□□ 2.91
CHD4-214ENST00000545942 SAFB2Q14151 953 aaKnown RBP eCLIP33.22■■■□□ 2.91
CHD4-214ENST00000545942 POGKQ9P215 609 aa33.21■■■□□ 2.91
CHD4-214ENST00000545942 NGLY1Q96IV0 654 aa33.2■■■□□ 2.91
CHD4-214ENST00000545942 COL22A1Q8NFW1 1626 aaPredicted RBP33.19■■■□□ 2.9
CHD4-214ENST00000545942 TRAK1Q9UPV9 953 aa33.17■■■□□ 2.9
CHD4-214ENST00000545942 KIF1AQ12756 1690 aa33.16■■■□□ 2.9
CHD4-214ENST00000545942 QTRT2Q9H974 415 aaKnown RBP33.15■■■□□ 2.9
CHD4-214ENST00000545942 CDK12Q9NYV4 1490 aaPredicted RBP33.15■■■□□ 2.9
CHD4-214ENST00000545942 PHF8Q9UPP1 1060 aa33.13■■■□□ 2.89
CHD4-214ENST00000545942 KRT28Q7Z3Y7 464 aa33.1■■■□□ 2.89
CHD4-214ENST00000545942 SPATA31A3Q5VYP0 1347 aa33.09■■■□□ 2.89
CHD4-214ENST00000545942 RBM6P78332 1123 aaKnown RBP33.09■■■□□ 2.89
CHD4-214ENST00000545942 ADGRB2O60241 1585 aa33.09■■■□□ 2.89
CHD4-214ENST00000545942 FNBP4Q8N3X1 1017 aaPredicted RBP33.08■■■□□ 2.89
CHD4-214ENST00000545942 USP21Q9UK80 565 aa33.08■■■□□ 2.89
CHD4-214ENST00000545942 ANKARQ7Z5J8 1434 aa33.08■■■□□ 2.89
CHD4-214ENST00000545942 HIRIP3Q9BW71 556 aaPredicted RBP33.06■■■□□ 2.88
CHD4-214ENST00000545942 PSME1Q06323 249 aa33.05■■■□□ 2.88
CHD4-214ENST00000545942 MINK1Q8N4C8 1332 aaPredicted RBP33.05■■■□□ 2.88
CHD4-214ENST00000545942 RGPD8O14715 1765 aaPredicted RBP33.03■■■□□ 2.88
CHD4-214ENST00000545942 TRPC5Q9UL62 973 aaPredicted RBP33.02■■■□□ 2.88
CHD4-214ENST00000545942 EIF3AQ14152 1382 aaKnown RBP33.02■■■□□ 2.88
CHD4-214ENST00000545942 RGS12O14924 1447 aa33■■■□□ 2.87
CHD4-214ENST00000545942 TNS3Q68CZ2 1445 aa33■■■□□ 2.87
CHD4-214ENST00000545942 USP32Q8NFA0 1604 aa32.99■■■□□ 2.87
CHD4-214ENST00000545942 SBNO1A3KN83 1393 aa32.99■■■□□ 2.87
CHD4-214ENST00000545942 WASLO00401 505 aaPredicted RBP32.99■■■□□ 2.87
CHD4-214ENST00000545942 PMFBP1Q8TBY8 1022 aa32.99■■■□□ 2.87
CHD4-214ENST00000545942 UPF1Q92900 1129 aaKnown RBP eCLIP32.99■■■□□ 2.87
CHD4-214ENST00000545942 TULP4Q9NRJ4 1543 aa32.96■■■□□ 2.87
CHD4-214ENST00000545942 ATRNO75882 1429 aa32.95■■■□□ 2.87
CHD4-214ENST00000545942 PRR36Q9H6K5 1346 aa32.95■■■□□ 2.86
CHD4-214ENST00000545942 BCL9LQ86UU0 1499 aa32.94■■■□□ 2.86
CHD4-214ENST00000545942 MARF1Q9Y4F3 1742 aaKnown RBP32.94■■■□□ 2.86
CHD4-214ENST00000545942 ARHGEF10O15013 1369 aa32.93■■■□□ 2.86
CHD4-214ENST00000545942 ARHGEF28Q8N1W1 1705 aaKnown RBP32.93■■■□□ 2.86
CHD4-214ENST00000545942 LMOD2Q6P5Q4 547 aa32.92■■■□□ 2.86
CHD4-214ENST00000545942 HAP1P54257 671 aaPredicted RBP32.91■■■□□ 2.86
CHD4-214ENST00000545942 KIAA1210Q9ULL0 1709 aa32.91■■■□□ 2.86
CHD4-214ENST00000545942 GPRASP1Q5JY77 1395 aa32.89■■■□□ 2.86
CHD4-214ENST00000545942 CABLES1Q8TDN4 633 aa32.88■■■□□ 2.85
CHD4-214ENST00000545942 NBPF1Q3BBV0 1214 aa32.86■■■□□ 2.85
CHD4-214ENST00000545942 SLIT2O94813 1529 aa32.86■■■□□ 2.85
CHD4-214ENST00000545942 PLEKHG5O94827 1062 aa32.84■■■□□ 2.85
CHD4-214ENST00000545942 UNC5CLQ8IV45 518 aa32.84■■■□□ 2.85
CHD4-214ENST00000545942 NGDNQ8NEJ9 315 aaKnown RBP32.84■■■□□ 2.85
CHD4-214ENST00000545942 GJD4Q96KN9 370 aaPredicted RBP32.83■■■□□ 2.85
CHD4-214ENST00000545942 NUDT16Q96DE0 195 aaKnown RBP32.82■■■□□ 2.84
CHD4-214ENST00000545942 ATP7BP35670 1465 aa32.82■■■□□ 2.84
CHD4-214ENST00000545942 TRPM3Q9HCF6 1732 aaPredicted RBP32.81■■■□□ 2.84
CHD4-214ENST00000545942 L3MBTL2Q969R5 705 aa32.8■■■□□ 2.84
CHD4-214ENST00000545942 CDK19Q9BWU1 502 aa32.8■■■□□ 2.84
CHD4-214ENST00000545942 TNKS1BP1Q9C0C2 1729 aaKnown RBP32.8■■■□□ 2.84
CHD4-214ENST00000545942 ATAD2Q6PL18 1390 aa32.78■■■□□ 2.84
CHD4-214ENST00000545942 SIN3AQ96ST3 1273 aa32.77■■■□□ 2.84
CHD4-214ENST00000545942 ABCA3Q99758 1704 aa32.77■■■□□ 2.84
CHD4-214ENST00000545942 ITSN1Q15811 1721 aa32.75■■■□□ 2.83
CHD4-214ENST00000545942 ALS2Q96Q42 1657 aa32.75■■■□□ 2.83
CHD4-214ENST00000545942 RALGAPBQ86X10 1494 aa32.74■■■□□ 2.83
CHD4-214ENST00000545942 PAK3O75914 559 aaPredicted RBP32.74■■■□□ 2.83
CHD4-214ENST00000545942 CENPJQ9HC77 1338 aaPredicted RBP32.73■■■□□ 2.83
CHD4-214ENST00000545942 CCDC61Q9Y6R9 512 aa32.73■■■□□ 2.83
CHD4-214ENST00000545942 NEUROD1Q13562 356 aa32.72■■■□□ 2.83
CHD4-214ENST00000545942 FAM83GA6ND36 823 aa32.71■■■□□ 2.83
CHD4-214ENST00000545942 VPS72Q15906 364 aa32.7■■■□□ 2.82
CHD4-214ENST00000545942 GLI3P10071 1580 aa32.69■■■□□ 2.82
CHD4-214ENST00000545942 POLR3AO14802 1390 aaPredicted RBP32.68■■■□□ 2.82
CHD4-214ENST00000545942 PLCH1Q4KWH8 1693 aa32.68■■■□□ 2.82
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms