RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 CCDC9Q9Y3X0 531 aaKnown RBP15.23■□□□□ 0.03
COL4A6-209ENST00000545689 TPM1P09493 284 aa15.23■□□□□ 0.03
COL4A6-209ENST00000545689 TRIM29Q14134 588 aa15.23■□□□□ 0.03
COL4A6-209ENST00000545689 LNPKQ9C0E8 428 aa15.22■□□□□ 0.03
COL4A6-209ENST00000545689 FRAT2O75474 233 aaPredicted RBP15.22■□□□□ 0.03
COL4A6-209ENST00000545689 PSME1Q06323 249 aa15.22■□□□□ 0.03
COL4A6-209ENST00000545689 GAS2L2Q8NHY3 880 aa15.22■□□□□ 0.03
COL4A6-209ENST00000545689 CCDC141Q6ZP82 1450 aa15.22■□□□□ 0.03
COL4A6-209ENST00000545689 GNAI3P08754 354 aa15.22■□□□□ 0.03
COL4A6-209ENST00000545689 CFAP70Q5T0N1 1121 aa15.22■□□□□ 0.03
COL4A6-209ENST00000545689 GTF2E1P29083 439 aaPredicted RBP15.22■□□□□ 0.03
COL4A6-209ENST00000545689 ANKRD30BQ9BXX2 1392 aa15.22■□□□□ 0.03
COL4A6-209ENST00000545689 TPM2P07951 284 aa15.22■□□□□ 0.03
COL4A6-209ENST00000545689 HOOK1Q9UJC3 728 aaKnown RBP15.22■□□□□ 0.03
COL4A6-209ENST00000545689 SMC3Q9UQE7 1217 aa15.22■□□□□ 0.03
COL4A6-209ENST00000545689 HSP90AA2PQ14568 343 aaPredicted RBP15.21■□□□□ 0.03
COL4A6-209ENST00000545689 NESP48681 1621 aa15.21■□□□□ 0.03
COL4A6-209ENST00000545689 NFKBIBQ15653 356 aa15.21■□□□□ 0.03
COL4A6-209ENST00000545689 MCM2P49736 904 aa15.21■□□□□ 0.02
COL4A6-209ENST00000545689 TPD52L1Q16890 204 aaPredicted RBP15.21■□□□□ 0.02
COL4A6-209ENST00000545689 TSR1Q2NL82 804 aaKnown RBP15.21■□□□□ 0.02
COL4A6-209ENST00000545689 PTPN23Q9H3S7 1636 aa15.21■□□□□ 0.02
COL4A6-209ENST00000545689 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.2■□□□□ 0.02
COL4A6-209ENST00000545689 HMOX1P09601 288 aa15.2■□□□□ 0.02
COL4A6-209ENST00000545689 MRE11P49959 708 aa15.2■□□□□ 0.02
COL4A6-209ENST00000545689 CCDC30Q5VVM6 783 aa15.2■□□□□ 0.02
COL4A6-209ENST00000545689 UBTFL1P0CB47 393 aaPredicted RBP15.19■□□□□ 0.02
COL4A6-209ENST00000545689 WWC1Q8IX03 1113 aa15.19■□□□□ 0.02
COL4A6-209ENST00000545689 AMOTL1Q8IY63 956 aa15.19■□□□□ 0.02
COL4A6-209ENST00000545689 G3V3G9 751 aa15.19■□□□□ 0.02
COL4A6-209ENST00000545689 EVA1CP58658 441 aa15.19■□□□□ 0.02
COL4A6-209ENST00000545689 DCAF8Q5TAQ9 597 aa15.19■□□□□ 0.02
COL4A6-209ENST00000545689 CDCA7LQ96GN5 454 aa15.19■□□□□ 0.02
COL4A6-209ENST00000545689 AFAP1Q8N556 730 aa15.19■□□□□ 0.02
COL4A6-209ENST00000545689 LAMC3Q9Y6N6 1575 aa15.19■□□□□ 0.02
COL4A6-209ENST00000545689 FAM69CQ0P6D2 419 aa15.18■□□□□ 0.02
COL4A6-209ENST00000545689 CYB5RLQ6IPT4 315 aa15.18■□□□□ 0.02
COL4A6-209ENST00000545689 TRDNQ13061 729 aa15.18■□□□□ 0.02
COL4A6-209ENST00000545689 MCTP1Q6DN14 999 aa15.18■□□□□ 0.02
COL4A6-209ENST00000545689 NBPF1Q3BBV0 1214 aa15.18■□□□□ 0.02
COL4A6-209ENST00000545689 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.18■□□□□ 0.02
COL4A6-209ENST00000545689 CPLX1O14810 134 aa15.18■□□□□ 0.02
COL4A6-209ENST00000545689 LETM1O95202 739 aaPredicted RBP15.18■□□□□ 0.02
COL4A6-209ENST00000545689 PSMA5P28066 241 aa15.18■□□□□ 0.02
COL4A6-209ENST00000545689 TMEM132EQ6IEE7 984 aa15.18■□□□□ 0.02
COL4A6-209ENST00000545689 CNTROBQ8N137 903 aa15.18■□□□□ 0.02
COL4A6-209ENST00000545689 SLC52A1Q9NWF4 448 aa15.18■□□□□ 0.02
COL4A6-209ENST00000545689 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.18■□□□□ 0.02
COL4A6-209ENST00000545689 RABEP1Q15276 862 aa15.17■□□□□ 0.02
COL4A6-209ENST00000545689 HIP1O00291 1037 aa15.17■□□□□ 0.02
COL4A6-209ENST00000545689 MARCH6O60337 910 aa15.17■□□□□ 0.02
COL4A6-209ENST00000545689 PDZRN3Q9UPQ7 1066 aa15.17■□□□□ 0.02
COL4A6-209ENST00000545689 ATAD2Q6PL18 1390 aa15.16■□□□□ 0.02
COL4A6-209ENST00000545689 RAPGEF4Q8WZA2 1011 aa15.16■□□□□ 0.02
COL4A6-209ENST00000545689 CCDC47Q96A33 483 aaKnown RBP15.16■□□□□ 0.02
COL4A6-209ENST00000545689 NOL10Q9BSC4 688 aaKnown RBP15.16■□□□□ 0.02
COL4A6-209ENST00000545689 AKNAQ7Z591 1439 aa15.16■□□□□ 0.02
COL4A6-209ENST00000545689 ZNF428Q96B54 188 aa15.16■□□□□ 0.02
COL4A6-209ENST00000545689 ZNF692Q9BU19 519 aaPredicted RBP15.16■□□□□ 0.02
COL4A6-209ENST00000545689 EXOSC9Q06265 439 aaKnown RBP15.16■□□□□ 0.02
COL4A6-209ENST00000545689 BICD2Q8TD16 824 aa15.16■□□□□ 0.02
COL4A6-209ENST00000545689 ANKRD20A12PQ8NF67 263 aa15.15■□□□□ 0.02
COL4A6-209ENST00000545689 CAMSAP2Q08AD1 1489 aa15.15■□□□□ 0.02
COL4A6-209ENST00000545689 CDK13Q14004 1512 aaKnown RBP15.15■□□□□ 0.02
COL4A6-209ENST00000545689 PEG3Q9GZU2 1588 aa15.15■□□□□ 0.02
COL4A6-209ENST00000545689 MBD3O95983 291 aa15.15■□□□□ 0.02
COL4A6-209ENST00000545689 PRKAR2BP31323 418 aa15.15■□□□□ 0.02
COL4A6-209ENST00000545689 GPS2Q13227 327 aa15.15■□□□□ 0.02
COL4A6-209ENST00000545689 ERC1Q8IUD2 1116 aa15.15■□□□□ 0.02
COL4A6-209ENST00000545689 SASS6Q6UVJ0 657 aa15.14■□□□□ 0.01
COL4A6-209ENST00000545689 TWISTNBQ3B726 338 aaPredicted RBP15.14■□□□□ 0.01
COL4A6-209ENST00000545689 CCDC70Q6NSX1 233 aa15.14■□□□□ 0.01
COL4A6-209ENST00000545689 KIF14Q15058 1648 aa15.14■□□□□ 0.01
COL4A6-209ENST00000545689 A0A0U1RQG5 324 aaPredicted RBP15.14■□□□□ 0.01
COL4A6-209ENST00000545689 BACH2Q9BYV9 841 aa15.14■□□□□ 0.01
COL4A6-209ENST00000545689 BIVM-ERCC5R4GMW8 1640 aa15.14■□□□□ 0.01
COL4A6-209ENST00000545689 GPRASP1Q5JY77 1395 aa15.13■□□□□ 0.01
COL4A6-209ENST00000545689 NECTIN2Q92692 538 aa15.13■□□□□ 0.01
COL4A6-209ENST00000545689 CCDC39Q9UFE4 941 aa15.13■□□□□ 0.01
COL4A6-209ENST00000545689 CCDC73Q6ZRK6 1079 aa15.13■□□□□ 0.01
COL4A6-209ENST00000545689 RIC3Q7Z5B4 369 aa15.13■□□□□ 0.01
COL4A6-209ENST00000545689 CREBRFQ8IUR6 639 aa15.13■□□□□ 0.01
COL4A6-209ENST00000545689 MAGI1Q96QZ7 1491 aaPredicted RBP15.13■□□□□ 0.01
COL4A6-209ENST00000545689 VPS37CA5D8V6 355 aaPredicted RBP15.12■□□□□ 0.01
COL4A6-209ENST00000545689 CCT4P50991 539 aaKnown RBP15.12■□□□□ 0.01
COL4A6-209ENST00000545689 ERICH2A1L162 156 aa15.12■□□□□ 0.01
COL4A6-209ENST00000545689 PRAM1Q96QH2 718 aa15.12■□□□□ 0.01
COL4A6-209ENST00000545689 FOXD4L6Q3SYB3 417 aaPredicted RBP15.12■□□□□ 0.01
COL4A6-209ENST00000545689 FOXD4L3Q6VB84 417 aaPredicted RBP15.12■□□□□ 0.01
COL4A6-209ENST00000545689 CWC22Q9HCG8 908 aaKnown RBP15.12■□□□□ 0.01
COL4A6-209ENST00000545689 ARID3AQ99856 593 aa15.11■□□□□ 0.01
COL4A6-209ENST00000545689 CLASRPQ8N2M8 674 aaKnown RBP15.11■□□□□ 0.01
COL4A6-209ENST00000545689 FAM43AQ8N2R8 423 aa15.11■□□□□ 0.01
COL4A6-209ENST00000545689 MVPQ14764 893 aaKnown RBP15.11■□□□□ 0.01
COL4A6-209ENST00000545689 PLEKHO1Q53GL0 409 aaPredicted RBP15.11■□□□□ 0.01
COL4A6-209ENST00000545689 GNAI2P04899 355 aa15.11■□□□□ 0.01
COL4A6-209ENST00000545689 CEP89Q96ST8 783 aa15.11■□□□□ 0.01
COL4A6-209ENST00000545689 NOB1Q9ULX3 412 aaKnown RBP15.11■□□□□ 0.01
COL4A6-209ENST00000545689 NLRP6P59044 892 aa15.1■□□□□ 0.01
COL4A6-209ENST00000545689 SAFBQ15424 915 aaKnown RBP eCLIP15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms