RNA–Protein interactions for RNA: ENST00000544983.1

SNHG1-221, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 870 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-221ENST00000544983 DCCP43146 1447 aa16.62■□□□□ 0.25
SNHG1-221ENST00000544983 ADGRL3Q9HAR2 1447 aa16.62■□□□□ 0.25
SNHG1-221ENST00000544983 WAPLQ7Z5K2 1190 aa16.61■□□□□ 0.25
SNHG1-221ENST00000544983 ARHGEF28Q8N1W1 1705 aaKnown RBP16.6■□□□□ 0.25
SNHG1-221ENST00000544983 CADPS2Q86UW7 1296 aa16.6■□□□□ 0.25
SNHG1-221ENST00000544983 CENPJQ9HC77 1338 aaPredicted RBP16.6■□□□□ 0.25
SNHG1-221ENST00000544983 XIRP1Q702N8 1843 aaKnown RBP16.59■□□□□ 0.25
SNHG1-221ENST00000544983 ATF3P18847 181 aa16.59■□□□□ 0.25
SNHG1-221ENST00000544983 TOM1O60784 492 aa16.58■□□□□ 0.24
SNHG1-221ENST00000544983 SBNO2Q9Y2G9 1366 aa16.58■□□□□ 0.24
SNHG1-221ENST00000544983 PLEKHH1Q9ULM0 1364 aa16.57■□□□□ 0.24
SNHG1-221ENST00000544983 USP47Q96K76 1375 aa16.56■□□□□ 0.24
SNHG1-221ENST00000544983 RBM33Q96EV2 1170 aaKnown RBP16.56■□□□□ 0.24
SNHG1-221ENST00000544983 ADGRB2O60241 1585 aa16.55■□□□□ 0.24
SNHG1-221ENST00000544983 CDC42BPGQ6DT37 1551 aa16.55■□□□□ 0.24
SNHG1-221ENST00000544983 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.54■□□□□ 0.24
SNHG1-221ENST00000544983 EIF4G2P78344 907 aaKnown RBP eCLIP16.54■□□□□ 0.24
SNHG1-221ENST00000544983 SAFB2Q14151 953 aaKnown RBP eCLIP16.54■□□□□ 0.24
SNHG1-221ENST00000544983 NALCNQ8IZF0 1738 aa16.53■□□□□ 0.24
SNHG1-221ENST00000544983 MINK1Q8N4C8 1332 aaPredicted RBP16.52■□□□□ 0.24
SNHG1-221ENST00000544983 UBAP1LF5GYI3 381 aa16.52■□□□□ 0.24
SNHG1-221ENST00000544983 WASLO00401 505 aaPredicted RBP16.52■□□□□ 0.24
SNHG1-221ENST00000544983 EVC2Q86UK5 1308 aa16.51■□□□□ 0.23
SNHG1-221ENST00000544983 QRICH2Q9H0J4 1663 aa16.51■□□□□ 0.23
SNHG1-221ENST00000544983 ST20-MTHFSA0A0A6YYL1 179 aa16.51■□□□□ 0.23
SNHG1-221ENST00000544983 SLAIN2Q9P270 581 aa16.51■□□□□ 0.23
SNHG1-221ENST00000544983 PUS7Q96PZ0 661 aaKnown RBP16.5■□□□□ 0.23
SNHG1-221ENST00000544983 ANKARQ7Z5J8 1434 aa16.49■□□□□ 0.23
SNHG1-221ENST00000544983 TESK2Q96S53 571 aa16.48■□□□□ 0.23
SNHG1-221ENST00000544983 HIRIP3Q9BW71 556 aaPredicted RBP16.48■□□□□ 0.23
SNHG1-221ENST00000544983 MST1RQ04912 1400 aa16.47■□□□□ 0.23
SNHG1-221ENST00000544983 CDCA8Q53HL2 280 aa16.47■□□□□ 0.23
SNHG1-221ENST00000544983 CDK19Q9BWU1 502 aa16.47■□□□□ 0.23
SNHG1-221ENST00000544983 FMN2Q9NZ56 1722 aa16.46■□□□□ 0.23
SNHG1-221ENST00000544983 TMF1P82094 1093 aa16.46■□□□□ 0.23
SNHG1-221ENST00000544983 C1orf167Q5SNV9 1468 aa16.46■□□□□ 0.23
SNHG1-221ENST00000544983 TULP4Q9NRJ4 1543 aa16.45■□□□□ 0.22
SNHG1-221ENST00000544983 HSPA5P11021 654 aaKnown RBP16.45■□□□□ 0.22
SNHG1-221ENST00000544983 SRPK2P78362 688 aaKnown RBP16.44■□□□□ 0.22
SNHG1-221ENST00000544983 ATAD2Q6PL18 1390 aa16.43■□□□□ 0.22
SNHG1-221ENST00000544983 CCDC61Q9Y6R9 512 aa16.43■□□□□ 0.22
SNHG1-221ENST00000544983 NUDT16Q96DE0 195 aaKnown RBP16.42■□□□□ 0.22
SNHG1-221ENST00000544983 ESCO1Q5FWF5 840 aa16.41■□□□□ 0.22
SNHG1-221ENST00000544983 BRINP3Q76B58 766 aa16.41■□□□□ 0.22
SNHG1-221ENST00000544983 PIP4K2BP78356 416 aa16.4■□□□□ 0.22
SNHG1-221ENST00000544983 ATP7BP35670 1465 aa16.4■□□□□ 0.22
SNHG1-221ENST00000544983 NINLQ9Y2I6 1382 aa16.39■□□□□ 0.21
SNHG1-221ENST00000544983 NUTM2FA1L443 756 aa16.39■□□□□ 0.21
SNHG1-221ENST00000544983 CABP2Q9NPB3 220 aa16.39■□□□□ 0.21
SNHG1-221ENST00000544983 PHF8Q9UPP1 1060 aa16.39■□□□□ 0.21
SNHG1-221ENST00000544983 SCAF1Q9H7N4 1312 aaKnown RBP16.39■□□□□ 0.21
SNHG1-221ENST00000544983 ITSN1Q15811 1721 aa16.39■□□□□ 0.21
SNHG1-221ENST00000544983 KIF1AQ12756 1690 aa16.38■□□□□ 0.21
SNHG1-221ENST00000544983 PLEKHG3A1L390 1219 aa16.38■□□□□ 0.21
SNHG1-221ENST00000544983 PRR36Q9H6K5 1346 aa16.38■□□□□ 0.21
SNHG1-221ENST00000544983 ROBO1Q9Y6N7 1651 aa16.37■□□□□ 0.21
SNHG1-221ENST00000544983 ORAI2Q96SN7 254 aa16.37■□□□□ 0.21
SNHG1-221ENST00000544983 NPHP3Q7Z494 1330 aa16.37■□□□□ 0.21
SNHG1-221ENST00000544983 USP32Q8NFA0 1604 aa16.37■□□□□ 0.21
SNHG1-221ENST00000544983 PPIP5K1Q6PFW1 1433 aa16.35■□□□□ 0.21
SNHG1-221ENST00000544983 TOPAZ1Q8N9V7 1692 aa16.34■□□□□ 0.21
SNHG1-221ENST00000544983 ZNF692Q9BU19 519 aaPredicted RBP16.34■□□□□ 0.21
SNHG1-221ENST00000544983 POLR3AO14802 1390 aaPredicted RBP16.34■□□□□ 0.21
SNHG1-221ENST00000544983 BRD4O60885 1362 aaPredicted RBP16.34■□□□□ 0.21
SNHG1-221ENST00000544983 MED1Q15648 1581 aaPredicted RBP16.34■□□□□ 0.21
SNHG1-221ENST00000544983 AHDC1Q5TGY3 1603 aaPredicted RBP16.34■□□□□ 0.21
SNHG1-221ENST00000544983 RGPD8O14715 1765 aaPredicted RBP16.33■□□□□ 0.21
SNHG1-221ENST00000544983 FOXO3O43524 673 aa16.33■□□□□ 0.2
SNHG1-221ENST00000544983 PSME1Q06323 249 aa16.33■□□□□ 0.2
SNHG1-221ENST00000544983 NGDNQ8NEJ9 315 aaKnown RBP16.33■□□□□ 0.2
SNHG1-221ENST00000544983 CABP1Q9NZU7 370 aa16.33■□□□□ 0.2
SNHG1-221ENST00000544983 HSPA1LP34931 641 aa16.32■□□□□ 0.2
SNHG1-221ENST00000544983 TERF2IPQ9NYB0 399 aa16.32■□□□□ 0.2
SNHG1-221ENST00000544983 SOS2Q07890 1332 aaPredicted RBP16.31■□□□□ 0.2
SNHG1-221ENST00000544983 PMFBP1Q8TBY8 1022 aa16.31■□□□□ 0.2
SNHG1-221ENST00000544983 NHSL1Q5SYE7 1610 aa16.3■□□□□ 0.2
SNHG1-221ENST00000544983 ACEP12821 1306 aa16.3■□□□□ 0.2
SNHG1-221ENST00000544983 TMC1Q8TDI8 760 aa16.3■□□□□ 0.2
SNHG1-221ENST00000544983 LRRC59Q96AG4 307 aaKnown RBP16.3■□□□□ 0.2
SNHG1-221ENST00000544983 HDGFL2Q7Z4V5 671 aaPredicted RBP16.29■□□□□ 0.2
SNHG1-221ENST00000544983 PHF23Q9BUL5 403 aaPredicted RBP16.29■□□□□ 0.2
SNHG1-221ENST00000544983 SBNO1A3KN83 1393 aa16.28■□□□□ 0.2
SNHG1-221ENST00000544983 KRT28Q7Z3Y7 464 aa16.28■□□□□ 0.2
SNHG1-221ENST00000544983 SLC12A5Q9H2X9 1139 aa16.28■□□□□ 0.2
SNHG1-221ENST00000544983 PXDNQ92626 1479 aa16.28■□□□□ 0.2
SNHG1-221ENST00000544983 CPSF1Q10570 1443 aaKnown RBP16.28■□□□□ 0.2
SNHG1-221ENST00000544983 PHLPP1O60346 1717 aa16.27■□□□□ 0.19
SNHG1-221ENST00000544983 ANKRD36BQ8N2N9 1353 aa16.26■□□□□ 0.19
SNHG1-221ENST00000544983 KIF7Q2M1P5 1343 aa16.26■□□□□ 0.19
SNHG1-221ENST00000544983 C11orf95C9JLR9 678 aaPredicted RBP16.26■□□□□ 0.19
SNHG1-221ENST00000544983 USP6P35125 1406 aa16.25■□□□□ 0.19
SNHG1-221ENST00000544983 KTN1Q86UP2 1357 aaKnown RBP16.25■□□□□ 0.19
SNHG1-221ENST00000544983 CCDC7Q96M83 1385 aa16.25■□□□□ 0.19
SNHG1-221ENST00000544983 COL16A1Q07092 1604 aaPredicted RBP16.24■□□□□ 0.19
SNHG1-221ENST00000544983 DDX17Q92841 729 aaKnown RBP16.24■□□□□ 0.19
SNHG1-221ENST00000544983 ARHGEF10O15013 1369 aa16.24■□□□□ 0.19
SNHG1-221ENST00000544983 SPATA31A3Q5VYP0 1347 aa16.23■□□□□ 0.19
SNHG1-221ENST00000544983 TTC21AQ8NDW8 1320 aa16.23■□□□□ 0.19
SNHG1-221ENST00000544983 POLR3GLQ9BT43 218 aa16.23■□□□□ 0.19
SNHG1-221ENST00000544983 JCADQ9P266 1359 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms