RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 HFM1A2PYH4 1435 aa19.59■□□□□ 0.73
USP28-212ENST00000544750 CDC42BPGQ6DT37 1551 aa19.58■□□□□ 0.73
USP28-212ENST00000544750 VGFO15240 615 aaPredicted RBP19.58■□□□□ 0.72
USP28-212ENST00000544750 NAIPQ13075 1403 aa19.58■□□□□ 0.72
USP28-212ENST00000544750 BCL9LQ86UU0 1499 aa19.57■□□□□ 0.72
USP28-212ENST00000544750 PXDNQ92626 1479 aa19.57■□□□□ 0.72
USP28-212ENST00000544750 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.56■□□□□ 0.72
USP28-212ENST00000544750 RPGRIP1LQ68CZ1 1315 aa19.55■□□□□ 0.72
USP28-212ENST00000544750 RRBP1Q9P2E9 1410 aaKnown RBP19.52■□□□□ 0.72
USP28-212ENST00000544750 NPHP3Q7Z494 1330 aa19.51■□□□□ 0.71
USP28-212ENST00000544750 PPARGC1BQ86YN6 1023 aaKnown RBP19.51■□□□□ 0.71
USP28-212ENST00000544750 BRWD3Q6RI45 1802 aa19.5■□□□□ 0.71
USP28-212ENST00000544750 IFT172Q9UG01 1749 aa19.5■□□□□ 0.71
USP28-212ENST00000544750 KNDC1Q76NI1 1749 aa19.49■□□□□ 0.71
USP28-212ENST00000544750 TECPR2O15040 1411 aa19.49■□□□□ 0.71
USP28-212ENST00000544750 GLI3P10071 1580 aa19.49■□□□□ 0.71
USP28-212ENST00000544750 ESCO1Q5FWF5 840 aa19.48■□□□□ 0.71
USP28-212ENST00000544750 CCDC125Q86Z20 511 aa19.48■□□□□ 0.71
USP28-212ENST00000544750 FMN2Q9NZ56 1722 aa19.48■□□□□ 0.71
USP28-212ENST00000544750 ZRANB1Q9UGI0 708 aa19.47■□□□□ 0.71
USP28-212ENST00000544750 SLIT2O94813 1529 aa19.46■□□□□ 0.71
USP28-212ENST00000544750 FOXO3O43524 673 aa19.46■□□□□ 0.71
USP28-212ENST00000544750 GJD4Q96KN9 370 aaPredicted RBP19.46■□□□□ 0.71
USP28-212ENST00000544750 RGPD8O14715 1765 aaPredicted RBP19.44■□□□□ 0.7
USP28-212ENST00000544750 KIF1AQ12756 1690 aa19.44■□□□□ 0.7
USP28-212ENST00000544750 XPCQ01831 940 aaPredicted RBP19.44■□□□□ 0.7
USP28-212ENST00000544750 FOXD1Q16676 465 aa19.44■□□□□ 0.7
USP28-212ENST00000544750 USP32Q8NFA0 1604 aa19.43■□□□□ 0.7
USP28-212ENST00000544750 RALGAPBQ86X10 1494 aa19.43■□□□□ 0.7
USP28-212ENST00000544750 ADGRF5Q8IZF2 1346 aa19.43■□□□□ 0.7
USP28-212ENST00000544750 LRPPRCP42704 1394 aaKnown RBP19.43■□□□□ 0.7
USP28-212ENST00000544750 SPATA31E1Q6ZUB1 1445 aa19.42■□□□□ 0.7
USP28-212ENST00000544750 WAPLQ7Z5K2 1190 aa19.41■□□□□ 0.7
USP28-212ENST00000544750 SLC4A1APQ9BWU0 796 aaKnown RBP19.41■□□□□ 0.7
USP28-212ENST00000544750 SPATA31A3Q5VYP0 1347 aa19.41■□□□□ 0.7
USP28-212ENST00000544750 ABCC11Q96J66 1382 aa19.41■□□□□ 0.7
USP28-212ENST00000544750 PLEKHH1Q9ULM0 1364 aa19.41■□□□□ 0.7
USP28-212ENST00000544750 UNC5CLQ8IV45 518 aa19.4■□□□□ 0.7
USP28-212ENST00000544750 NWD2Q9ULI1 1742 aa19.39■□□□□ 0.7
USP28-212ENST00000544750 BLMP54132 1417 aaPredicted RBP19.39■□□□□ 0.69
USP28-212ENST00000544750 PLCH1Q4KWH8 1693 aa19.39■□□□□ 0.69
USP28-212ENST00000544750 ABCA3Q99758 1704 aa19.39■□□□□ 0.69
USP28-212ENST00000544750 NUTM2FA1L443 756 aa19.38■□□□□ 0.69
USP28-212ENST00000544750 CCDC144AA2RUR9 1427 aa19.37■□□□□ 0.69
USP28-212ENST00000544750 PIK3C2GO75747 1445 aa19.37■□□□□ 0.69
USP28-212ENST00000544750 ANKRD30BQ9BXX2 1392 aa19.36■□□□□ 0.69
USP28-212ENST00000544750 STK26Q9P289 416 aa19.36■□□□□ 0.69
USP28-212ENST00000544750 YTHDC2Q9H6S0 1430 aaKnown RBP19.34■□□□□ 0.69
USP28-212ENST00000544750 TMEM132EQ6IEE7 984 aa19.34■□□□□ 0.69
USP28-212ENST00000544750 LRP5O75197 1615 aa19.33■□□□□ 0.69
USP28-212ENST00000544750 KRT28Q7Z3Y7 464 aa19.33■□□□□ 0.68
USP28-212ENST00000544750 TNS3Q68CZ2 1445 aa19.33■□□□□ 0.68
USP28-212ENST00000544750 ONECUT3O60422 494 aaPredicted RBP19.32■□□□□ 0.68
USP28-212ENST00000544750 DEFB132Q7Z7B7 95 aa19.32■□□□□ 0.68
USP28-212ENST00000544750 SIRT1Q96EB6 747 aa19.32■□□□□ 0.68
USP28-212ENST00000544750 VPS72Q15906 364 aa19.31■□□□□ 0.68
USP28-212ENST00000544750 RGL3Q3MIN7 710 aa19.31■□□□□ 0.68
USP28-212ENST00000544750 NRAPQ86VF7 1730 aa19.31■□□□□ 0.68
USP28-212ENST00000544750 SEPT12Q8IYM1 358 aa19.3■□□□□ 0.68
USP28-212ENST00000544750 NRXN1Q9ULB1 1477 aa19.29■□□□□ 0.68
USP28-212ENST00000544750 PHF8Q9UPP1 1060 aa19.28■□□□□ 0.68
USP28-212ENST00000544750 SBNO1A3KN83 1393 aa19.28■□□□□ 0.68
USP28-212ENST00000544750 TRPM3Q9HCF6 1732 aaPredicted RBP19.28■□□□□ 0.68
USP28-212ENST00000544750 CABLES1Q8TDN4 633 aa19.27■□□□□ 0.68
USP28-212ENST00000544750 C14orf93Q9H972 538 aaKnown RBP19.26■□□□□ 0.67
USP28-212ENST00000544750 PSME1Q06323 249 aa19.25■□□□□ 0.67
USP28-212ENST00000544750 ALS2Q96Q42 1657 aa19.24■□□□□ 0.67
USP28-212ENST00000544750 KRT27Q7Z3Y8 459 aa19.24■□□□□ 0.67
USP28-212ENST00000544750 MPHOSPH9Q99550 1183 aa19.24■□□□□ 0.67
USP28-212ENST00000544750 CRYBG1Q9Y4K1 1723 aa19.23■□□□□ 0.67
USP28-212ENST00000544750 ARHGEF10O15013 1369 aa19.23■□□□□ 0.67
USP28-212ENST00000544750 ADGRB2O60241 1585 aa19.23■□□□□ 0.67
USP28-212ENST00000544750 DLC1Q96QB1 1528 aa19.22■□□□□ 0.67
USP28-212ENST00000544750 FAM83GA6ND36 823 aa19.22■□□□□ 0.67
USP28-212ENST00000544750 SF3B2Q13435 895 aaKnown RBP19.22■□□□□ 0.67
USP28-212ENST00000544750 RGPD1P0DJD0 1748 aa19.21■□□□□ 0.67
USP28-212ENST00000544750 COL14A1Q05707 1796 aaKnown RBP19.21■□□□□ 0.67
USP28-212ENST00000544750 DHX57Q6P158 1386 aaKnown RBP19.2■□□□□ 0.66
USP28-212ENST00000544750 ANKARQ7Z5J8 1434 aa19.2■□□□□ 0.66
USP28-212ENST00000544750 HAP1P54257 671 aaPredicted RBP19.2■□□□□ 0.66
USP28-212ENST00000544750 CFAP70Q5T0N1 1121 aa19.2■□□□□ 0.66
USP28-212ENST00000544750 TNS1Q9HBL0 1735 aaKnown RBP19.18■□□□□ 0.66
USP28-212ENST00000544750 CCDC9Q9Y3X0 531 aaKnown RBP19.18■□□□□ 0.66
USP28-212ENST00000544750 THSD7AQ9UPZ6 1657 aa19.17■□□□□ 0.66
USP28-212ENST00000544750 PRAM1Q96QH2 718 aa19.17■□□□□ 0.66
USP28-212ENST00000544750 ADGRB1O14514 1584 aa19.17■□□□□ 0.66
USP28-212ENST00000544750 PLEKHG5O94827 1062 aa19.16■□□□□ 0.66
USP28-212ENST00000544750 LMOD2Q6P5Q4 547 aa19.16■□□□□ 0.66
USP28-212ENST00000544750 PMFBP1Q8TBY8 1022 aa19.16■□□□□ 0.66
USP28-212ENST00000544750 HRCP23327 699 aa19.15■□□□□ 0.66
USP28-212ENST00000544750 BAG6P46379 1132 aa19.15■□□□□ 0.66
USP28-212ENST00000544750 SAFB2Q14151 953 aaKnown RBP eCLIP19.15■□□□□ 0.66
USP28-212ENST00000544750 PSDA5PKW4 1024 aaPredicted RBP19.14■□□□□ 0.65
USP28-212ENST00000544750 FAM98CQ17RN3 349 aaKnown RBP19.14■□□□□ 0.65
USP28-212ENST00000544750 BTG4Q9NY30 223 aa19.14■□□□□ 0.65
USP28-212ENST00000544750 DISP2A7MBM2 1401 aa19.13■□□□□ 0.65
USP28-212ENST00000544750 PRR36Q9H6K5 1346 aa19.12■□□□□ 0.65
USP28-212ENST00000544750 TULP4Q9NRJ4 1543 aa19.11■□□□□ 0.65
USP28-212ENST00000544750 SPATA31A5Q5VU36 1347 aa19.11■□□□□ 0.65
USP28-212ENST00000544750 SPATA31A7Q8IWB4 1347 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms