RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 GEMIN8Q9NWZ8 242 aaKnown RBP11.05□□□□□ -0.64
VPS13D-212ENST00000543766 PAX3P23760 479 aa11.05□□□□□ -0.64
VPS13D-212ENST00000543766 BIRC2Q13490 618 aa11.05□□□□□ -0.64
VPS13D-212ENST00000543766 HDAC1Q13547 482 aaPredicted RBP11.04□□□□□ -0.64
VPS13D-212ENST00000543766 ISY1Q9ULR0 285 aaKnown RBP11.04□□□□□ -0.64
VPS13D-212ENST00000543766 CTDP1Q9Y5B0 961 aaPredicted RBP11.04□□□□□ -0.64
VPS13D-212ENST00000543766 CEP170Q5SW79 1584 aa11.04□□□□□ -0.64
VPS13D-212ENST00000543766 CEP83Q9Y592 693 aa11.04□□□□□ -0.64
VPS13D-212ENST00000543766 NUP160Q12769 1436 aa11.04□□□□□ -0.64
VPS13D-212ENST00000543766 PPME1Q9Y570 386 aa11.04□□□□□ -0.64
VPS13D-212ENST00000543766 CARMIL1Q5VZK9 1371 aa11.03□□□□□ -0.64
VPS13D-212ENST00000543766 HMGN5P82970 282 aaKnown RBP11.03□□□□□ -0.64
VPS13D-212ENST00000543766 HNRNPUQ00839 825 aaKnown RBP eCLIP11.03□□□□□ -0.64
VPS13D-212ENST00000543766 GTF2A1P52655 376 aaPredicted RBP11.03□□□□□ -0.64
VPS13D-212ENST00000543766 HIRIP3Q9BW71 556 aaPredicted RBP11.03□□□□□ -0.64
VPS13D-212ENST00000543766 CCNB3Q8WWL7 1395 aa11.03□□□□□ -0.64
VPS13D-212ENST00000543766 SF3A1Q15459 793 aaKnown RBP11.03□□□□□ -0.64
VPS13D-212ENST00000543766 KIAA1211Q6ZU35 1233 aa11.03□□□□□ -0.64
VPS13D-212ENST00000543766 TIAM1Q13009 1591 aa11.02□□□□□ -0.64
VPS13D-212ENST00000543766 SH3BP5O60239 455 aa11.02□□□□□ -0.65
VPS13D-212ENST00000543766 RHBDL3P58872 404 aa11.02□□□□□ -0.65
VPS13D-212ENST00000543766 TOMM22Q9NS69 142 aa11.02□□□□□ -0.65
VPS13D-212ENST00000543766 ZBED9Q6R2W3 1325 aa11.02□□□□□ -0.65
VPS13D-212ENST00000543766 BIN2Q9UBW5 565 aaPredicted RBP11.02□□□□□ -0.65
VPS13D-212ENST00000543766 SMG6Q86US8 1419 aaKnown RBP11.01□□□□□ -0.65
VPS13D-212ENST00000543766 POLR1AO95602 1720 aaPredicted RBP11.01□□□□□ -0.65
VPS13D-212ENST00000543766 CBX1P83916 185 aa11.01□□□□□ -0.65
VPS13D-212ENST00000543766 ZRSR2Q15696 482 aaKnown RBP11.01□□□□□ -0.65
VPS13D-212ENST00000543766 VTI1AQ96AJ9 217 aa11.01□□□□□ -0.65
VPS13D-212ENST00000543766 AQRO60306 1485 aaKnown RBP eCLIP11□□□□□ -0.659e-7■■■■■ 33.6
VPS13D-212ENST00000543766 RAD54L2Q9Y4B4 1467 aa11□□□□□ -0.65
VPS13D-212ENST00000543766 PPRC1Q5VV67 1664 aaKnown RBP11□□□□□ -0.65
VPS13D-212ENST00000543766 LMNB1P20700 586 aa11□□□□□ -0.65
VPS13D-212ENST00000543766 CLCN1P35523 988 aa11□□□□□ -0.65
VPS13D-212ENST00000543766 MYCBPQ99417 103 aaPredicted RBP11□□□□□ -0.65
VPS13D-212ENST00000543766 SAMD9Q5K651 1589 aa11□□□□□ -0.65
VPS13D-212ENST00000543766 EPB41L2O43491 1005 aaKnown RBP11□□□□□ -0.65
VPS13D-212ENST00000543766 ZCRB1Q8TBF4 217 aaKnown RBP11□□□□□ -0.65
VPS13D-212ENST00000543766 MICAL1Q8TDZ2 1067 aa11□□□□□ -0.65
VPS13D-212ENST00000543766 TMX1Q9H3N1 280 aa11□□□□□ -0.65
VPS13D-212ENST00000543766 MYBPC2Q14324 1141 aa10.99□□□□□ -0.65
VPS13D-212ENST00000543766 CT47A1Q5JQC4 288 aaPredicted RBP10.99□□□□□ -0.65
VPS13D-212ENST00000543766 CCDC94Q9BW85 323 aaPredicted RBP10.99□□□□□ -0.65
VPS13D-212ENST00000543766 FRMD4BQ9Y2L6 1034 aa10.99□□□□□ -0.65
VPS13D-212ENST00000543766 ANKRD62A6NC57 917 aa10.98□□□□□ -0.65
VPS13D-212ENST00000543766 RIOK3O14730 519 aaKnown RBP10.98□□□□□ -0.65
VPS13D-212ENST00000543766 NRDCO43847 1150 aa10.98□□□□□ -0.65
VPS13D-212ENST00000543766 IRF5Q13568 498 aa10.98□□□□□ -0.65
VPS13D-212ENST00000543766 SETD5Q9C0A6 1442 aa10.98□□□□□ -0.65
VPS13D-212ENST00000543766 SYNJ2O15056 1496 aa10.98□□□□□ -0.65
VPS13D-212ENST00000543766 KANK4Q5T7N3 995 aaPredicted RBP10.98□□□□□ -0.65
VPS13D-212ENST00000543766 ZKSCAN2Q63HK3 967 aa10.98□□□□□ -0.65
VPS13D-212ENST00000543766 HSCBQ8IWL3 235 aa10.98□□□□□ -0.65
VPS13D-212ENST00000543766 GTPBP4Q9BZE4 634 aaKnown RBP10.98□□□□□ -0.65
VPS13D-212ENST00000543766 FHAD1B1AJZ9 1412 aa10.98□□□□□ -0.65
VPS13D-212ENST00000543766 MECOMQ03112 1051 aa10.97□□□□□ -0.65
VPS13D-212ENST00000543766 PCF11O94913 1555 aaKnown RBP10.97□□□□□ -0.65
VPS13D-212ENST00000543766 MAP4K4O95819 1239 aaPredicted RBP10.97□□□□□ -0.65
VPS13D-212ENST00000543766 CCDC172P0C7W6 258 aa10.96□□□□□ -0.65
VPS13D-212ENST00000543766 ZFYVE27Q5T4F4 411 aa10.96□□□□□ -0.65
VPS13D-212ENST00000543766 MTA3Q9BTC8 594 aa10.96□□□□□ -0.65
VPS13D-212ENST00000543766 RBM28Q9NW13 759 aaKnown RBP10.96□□□□□ -0.65
VPS13D-212ENST00000543766 FYCO1Q9BQS8 1478 aa10.96□□□□□ -0.66
VPS13D-212ENST00000543766 CAPN15O75808 1086 aa10.96□□□□□ -0.66
VPS13D-212ENST00000543766 CCT2P78371 535 aaKnown RBP10.96□□□□□ -0.66
VPS13D-212ENST00000543766 CCDC184Q52MB2 194 aa10.96□□□□□ -0.66
VPS13D-212ENST00000543766 FAM212AQ96EL1 285 aa10.96□□□□□ -0.66
VPS13D-212ENST00000543766 SUDS3Q9H7L9 328 aaPredicted RBP10.96□□□□□ -0.66
VPS13D-212ENST00000543766 ZNF853P0CG23 659 aa10.95□□□□□ -0.66
VPS13D-212ENST00000543766 DNAJC21Q5F1R6 531 aaKnown RBP10.95□□□□□ -0.66
VPS13D-212ENST00000543766 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.95□□□□□ -0.662e-6■■■■■ 66.5
VPS13D-212ENST00000543766 RBM5P52756 815 aaKnown RBP eCLIP10.95□□□□□ -0.66
VPS13D-212ENST00000543766 ZNF662Q6ZS27 426 aa10.95□□□□□ -0.66
VPS13D-212ENST00000543766 LRCH2Q5VUJ6 765 aa10.95□□□□□ -0.66
VPS13D-212ENST00000543766 CCDC125Q86Z20 511 aa10.95□□□□□ -0.66
VPS13D-212ENST00000543766 PRPF38AQ8NAV1 312 aaKnown RBP10.95□□□□□ -0.66
VPS13D-212ENST00000543766 FAM161AQ3B820 660 aa10.94□□□□□ -0.66
VPS13D-212ENST00000543766 L1TD1Q5T7N2 865 aaKnown RBP10.94□□□□□ -0.66
VPS13D-212ENST00000543766 SMC4Q9NTJ3 1288 aa10.94□□□□□ -0.66
VPS13D-212ENST00000543766 KRBA2Q6ZNG9 492 aa10.93□□□□□ -0.66
VPS13D-212ENST00000543766 CXorf38Q8TB03 319 aa10.93□□□□□ -0.66
VPS13D-212ENST00000543766 RAI14Q9P0K7 980 aa10.93□□□□□ -0.66
VPS13D-212ENST00000543766 GAPVD1Q14C86 1478 aa10.93□□□□□ -0.66
VPS13D-212ENST00000543766 AKNAQ7Z591 1439 aa10.93□□□□□ -0.66
VPS13D-212ENST00000543766 U2AF1L5P0DN76 240 aaPredicted RBP10.93□□□□□ -0.66
VPS13D-212ENST00000543766 U2AF1Q01081 240 aaKnown RBP eCLIP10.93□□□□□ -0.66
VPS13D-212ENST00000543766 NBPF10Q6P3W6 841 aaKnown RBP10.93□□□□□ -0.66
VPS13D-212ENST00000543766 RPAINQ86UA6 219 aa10.93□□□□□ -0.66
VPS13D-212ENST00000543766 KCNV2Q8TDN2 545 aa10.93□□□□□ -0.66
VPS13D-212ENST00000543766 KDM4CQ9H3R0 1056 aa10.93□□□□□ -0.66
VPS13D-212ENST00000543766 YY1AP1Q9H869 796 aa10.93□□□□□ -0.66
VPS13D-212ENST00000543766 DDX46Q7L014 1031 aaKnown RBP10.92□□□□□ -0.66
VPS13D-212ENST00000543766 GRIN2BQ13224 1484 aa10.92□□□□□ -0.66
VPS13D-212ENST00000543766 TPM3P06753 285 aa10.92□□□□□ -0.66
VPS13D-212ENST00000543766 NFKBIBQ15653 356 aa10.92□□□□□ -0.66
VPS13D-212ENST00000543766 NME8Q8N427 588 aa10.92□□□□□ -0.66
VPS13D-212ENST00000543766 ARL10Q8N8L6 244 aa10.92□□□□□ -0.66
VPS13D-212ENST00000543766 BACH2Q9BYV9 841 aa10.92□□□□□ -0.66
VPS13D-212ENST00000543766 TESPA1A2RU30 521 aaPredicted RBP10.92□□□□□ -0.66
VPS13D-212ENST00000543766 ZSCAN20P17040 1043 aaPredicted RBP10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms