RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 SLC52A1Q9NWF4 448 aa9.55□□□□□ -0.88
VPS13D-211ENST00000543710 CHMP3Q9Y3E7 222 aa9.55□□□□□ -0.88
VPS13D-211ENST00000543710 NF2P35240 595 aa9.54□□□□□ -0.88
VPS13D-211ENST00000543710 ACBD3Q9H3P7 528 aa9.54□□□□□ -0.88
VPS13D-211ENST00000543710 NUCB2P80303 420 aa9.53□□□□□ -0.88
VPS13D-211ENST00000543710 CCDC47Q96A33 483 aaKnown RBP9.53□□□□□ -0.88
VPS13D-211ENST00000543710 POLA1P09884 1462 aaPredicted RBP9.53□□□□□ -0.88
VPS13D-211ENST00000543710 ARAP1Q96P48 1450 aa9.53□□□□□ -0.88
VPS13D-211ENST00000543710 TATP17735 454 aaPredicted RBP9.53□□□□□ -0.88
VPS13D-211ENST00000543710 MFAP1P55081 439 aaKnown RBP9.53□□□□□ -0.88
VPS13D-211ENST00000543710 SMG6Q86US8 1419 aaKnown RBP9.53□□□□□ -0.88
VPS13D-211ENST00000543710 ARHGAP5Q13017 1502 aa9.53□□□□□ -0.88
VPS13D-211ENST00000543710 TMOD2Q9NZR1 351 aa9.53□□□□□ -0.88
VPS13D-211ENST00000543710 EIF2AK4Q9P2K8 1649 aaKnown RBP9.53□□□□□ -0.88
VPS13D-211ENST00000543710 LMOD1P29536 600 aaPredicted RBP9.53□□□□□ -0.88
VPS13D-211ENST00000543710 HIRIP3Q9BW71 556 aaPredicted RBP9.53□□□□□ -0.88
VPS13D-211ENST00000543710 TSHZ2Q9NRE2 1034 aa9.53□□□□□ -0.88
VPS13D-211ENST00000543710 U2AF1L5P0DN76 240 aaPredicted RBP9.52□□□□□ -0.89
VPS13D-211ENST00000543710 U2AF1Q01081 240 aaKnown RBP eCLIP9.52□□□□□ -0.89
VPS13D-211ENST00000543710 TEX35Q5T0J7 233 aa9.52□□□□□ -0.89
VPS13D-211ENST00000543710 MCM2P49736 904 aa9.52□□□□□ -0.89
VPS13D-211ENST00000543710 AMER1Q5JTC6 1135 aaPredicted RBP9.52□□□□□ -0.89
VPS13D-211ENST00000543710 TMEM87AQ8NBN3 555 aa9.52□□□□□ -0.89
VPS13D-211ENST00000543710 HIP1O00291 1037 aa9.51□□□□□ -0.89
VPS13D-211ENST00000543710 WDR97A6NE52 1622 aa9.51□□□□□ -0.89
VPS13D-211ENST00000543710 PRXQ9BXM0 1461 aa9.51□□□□□ -0.89
VPS13D-211ENST00000543710 AK7Q96M32 723 aa9.51□□□□□ -0.89
VPS13D-211ENST00000543710 CHMP5Q9NZZ3 219 aa9.51□□□□□ -0.89
VPS13D-211ENST00000543710 GSE1Q14687 1217 aa9.5□□□□□ -0.89
VPS13D-211ENST00000543710 TSR1Q2NL82 804 aaKnown RBP9.5□□□□□ -0.89
VPS13D-211ENST00000543710 RNF20Q5VTR2 975 aa9.5□□□□□ -0.89
VPS13D-211ENST00000543710 RUNDC1Q96C34 613 aa9.5□□□□□ -0.89
VPS13D-211ENST00000543710 KIAA1107Q9UPP5 1409 aa9.5□□□□□ -0.89
VPS13D-211ENST00000543710 RAPGEF3O95398 923 aa9.5□□□□□ -0.89
VPS13D-211ENST00000543710 PLCB2Q00722 1185 aa9.5□□□□□ -0.89
VPS13D-211ENST00000543710 NOC3LQ8WTT2 800 aaKnown RBP9.5□□□□□ -0.89
VPS13D-211ENST00000543710 CCDC39Q9UFE4 941 aa9.5□□□□□ -0.89
VPS13D-211ENST00000543710 IGF1RP08069 1367 aa9.5□□□□□ -0.89
VPS13D-211ENST00000543710 CAVIN1Q6NZI2 390 aaKnown RBP9.5□□□□□ -0.89
VPS13D-211ENST00000543710 L3MBTL2Q969R5 705 aa9.5□□□□□ -0.89
VPS13D-211ENST00000543710 CDR1P51861 262 aa9.5□□□□□ -0.89
VPS13D-211ENST00000543710 INTS3Q68E01 1043 aaKnown RBP9.5□□□□□ -0.89
VPS13D-211ENST00000543710 WWC2Q6AWC2 1192 aa9.5□□□□□ -0.89
VPS13D-211ENST00000543710 ANKRD20A12PQ8NF67 263 aa9.5□□□□□ -0.89
VPS13D-211ENST00000543710 SNAPC4Q5SXM2 1469 aa9.5□□□□□ -0.89
VPS13D-211ENST00000543710 RPGRIP1LQ68CZ1 1315 aa9.5□□□□□ -0.89
VPS13D-211ENST00000543710 NEXNQ0ZGT2 675 aa9.49□□□□□ -0.89
VPS13D-211ENST00000543710 GRM1Q13255 1194 aa9.49□□□□□ -0.89
VPS13D-211ENST00000543710 CABP2Q9NPB3 220 aa9.49□□□□□ -0.89
VPS13D-211ENST00000543710 FANCAO15360 1455 aa9.49□□□□□ -0.89
VPS13D-211ENST00000543710 PTPN23Q9H3S7 1636 aa9.49□□□□□ -0.89
VPS13D-211ENST00000543710 NOM1Q5C9Z4 860 aaKnown RBP9.49□□□□□ -0.89
VPS13D-211ENST00000543710 ZPR1O75312 459 aa9.49□□□□□ -0.89
VPS13D-211ENST00000543710 PRKRIP1Q9H875 184 aaPredicted RBP9.49□□□□□ -0.89
VPS13D-211ENST00000543710 HSPA2P54652 639 aa9.49□□□□□ -0.89
VPS13D-211ENST00000543710 FBXO41Q8TF61 875 aa9.49□□□□□ -0.89
VPS13D-211ENST00000543710 IQGAP2Q13576 1575 aa9.48□□□□□ -0.89
VPS13D-211ENST00000543710 RBM42Q9BTD8 480 aaKnown RBP9.48□□□□□ -0.89
VPS13D-211ENST00000543710 NAP1L2Q9ULW6 460 aaPredicted RBP9.48□□□□□ -0.89
VPS13D-211ENST00000543710 DENND4BO75064 1496 aaPredicted RBP9.48□□□□□ -0.89
VPS13D-211ENST00000543710 CTTNBP2Q8WZ74 1663 aa9.48□□□□□ -0.89
VPS13D-211ENST00000543710 TXLNBQ8N3L3 684 aa9.48□□□□□ -0.89
VPS13D-211ENST00000543710 A0A0U1RQG5 324 aaPredicted RBP9.48□□□□□ -0.89
VPS13D-211ENST00000543710 EXOC5O00471 708 aa9.47□□□□□ -0.89
VPS13D-211ENST00000543710 GNAI1P63096 354 aa9.47□□□□□ -0.89
VPS13D-211ENST00000543710 ABTB2Q8N961 1025 aa9.47□□□□□ -0.89
VPS13D-211ENST00000543710 SPG7Q9UQ90 795 aa9.47□□□□□ -0.89
VPS13D-211ENST00000543710 ZNF652Q9Y2D9 606 aa9.47□□□□□ -0.89
VPS13D-211ENST00000543710 FAM135AQ9P2D6 1515 aa9.47□□□□□ -0.89
VPS13D-211ENST00000543710 ERC2O15083 957 aa9.47□□□□□ -0.89
VPS13D-211ENST00000543710 ARGLU1Q9NWB6 273 aaPredicted RBP9.47□□□□□ -0.89
VPS13D-211ENST00000543710 ABCA10Q8WWZ4 1543 aa9.47□□□□□ -0.89
VPS13D-211ENST00000543710 DDX58O95786 925 aaKnown RBP9.47□□□□□ -0.89
VPS13D-211ENST00000543710 NLRP6P59044 892 aa9.47□□□□□ -0.89
VPS13D-211ENST00000543710 KIF6Q6ZMV9 814 aa9.47□□□□□ -0.89
VPS13D-211ENST00000543710 ERCC4Q92889 916 aaPredicted RBP9.47□□□□□ -0.89
VPS13D-211ENST00000543710 MAGI1Q96QZ7 1491 aaPredicted RBP9.47□□□□□ -0.89
VPS13D-211ENST00000543710 ANKRD50Q9ULJ7 1429 aa9.47□□□□□ -0.89
VPS13D-211ENST00000543710 GOLGA6L19H0YKK7 550 aa9.47□□□□□ -0.89
VPS13D-211ENST00000543710 RFX1P22670 979 aa9.47□□□□□ -0.89
VPS13D-211ENST00000543710 PDE4AP27815 886 aa9.47□□□□□ -0.89
VPS13D-211ENST00000543710 CPLX2Q6PUV4 134 aaKnown RBP9.47□□□□□ -0.89
VPS13D-211ENST00000543710 NAT10Q9H0A0 1025 aaKnown RBP9.47□□□□□ -0.89
VPS13D-211ENST00000543710 CFAP43Q8NDM7 1665 aa9.47□□□□□ -0.89
VPS13D-211ENST00000543710 SYNE3Q6ZMZ3 975 aa9.47□□□□□ -0.89
VPS13D-211ENST00000543710 CERKQ8TCT0 537 aa9.46□□□□□ -0.89
VPS13D-211ENST00000543710 ANKRD30BQ9BXX2 1392 aa9.46□□□□□ -0.9
VPS13D-211ENST00000543710 MINK1Q8N4C8 1332 aaPredicted RBP9.46□□□□□ -0.9
VPS13D-211ENST00000543710 DHX29Q7Z478 1369 aaKnown RBP9.46□□□□□ -0.9
VPS13D-211ENST00000543710 H3BQV1 296 aa9.46□□□□□ -0.9
VPS13D-211ENST00000543710 IFFO2Q5TF58 517 aa9.46□□□□□ -0.9
VPS13D-211ENST00000543710 PSMA5P28066 241 aa9.45□□□□□ -0.9
VPS13D-211ENST00000543710 MYO6Q9UM54 1294 aa9.45□□□□□ -0.9
VPS13D-211ENST00000543710 PRM3Q9NNZ6 103 aa9.45□□□□□ -0.9
VPS13D-211ENST00000543710 PLEKHH1Q9ULM0 1364 aa9.45□□□□□ -0.9
VPS13D-211ENST00000543710 TNNT3P45378 269 aaPredicted RBP9.45□□□□□ -0.9
VPS13D-211ENST00000543710 PIP4K2AP48426 406 aaPredicted RBP9.45□□□□□ -0.9
VPS13D-211ENST00000543710 SPDYE4A6NLX3 237 aa9.45□□□□□ -0.9
VPS13D-211ENST00000543710 VPS53Q5VIR6 699 aa9.45□□□□□ -0.9
VPS13D-211ENST00000543710 ZNF428Q96B54 188 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms