RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 CENPJQ9HC77 1338 aaPredicted RBP17.2■□□□□ 0.34
DDX55-210ENST00000543016 DCCP43146 1447 aa17.19■□□□□ 0.34
DDX55-210ENST00000543016 ADGRL3Q9HAR2 1447 aa17.19■□□□□ 0.34
DDX55-210ENST00000543016 CADPS2Q86UW7 1296 aa17.18■□□□□ 0.34
DDX55-210ENST00000543016 ATF3P18847 181 aa17.17■□□□□ 0.34
DDX55-210ENST00000543016 PLEKHH1Q9ULM0 1364 aa17.16■□□□□ 0.34
DDX55-210ENST00000543016 SBNO2Q9Y2G9 1366 aa17.16■□□□□ 0.34
DDX55-210ENST00000543016 POTEDQ86YR6 584 aa17.16■□□□□ 0.34
DDX55-210ENST00000543016 ARHGEF28Q8N1W1 1705 aaKnown RBP17.16■□□□□ 0.34
DDX55-210ENST00000543016 USP47Q96K76 1375 aa17.15■□□□□ 0.34
DDX55-210ENST00000543016 TOM1O60784 492 aa17.15■□□□□ 0.34
DDX55-210ENST00000543016 EIF4G2P78344 907 aaKnown RBP eCLIP17.15■□□□□ 0.34
DDX55-210ENST00000543016 RBM33Q96EV2 1170 aaKnown RBP17.14■□□□□ 0.33
DDX55-210ENST00000543016 SAFB2Q14151 953 aaKnown RBP eCLIP17.13■□□□□ 0.33
DDX55-210ENST00000543016 XIRP1Q702N8 1843 aaKnown RBP17.12■□□□□ 0.33
DDX55-210ENST00000543016 ADGRB2O60241 1585 aa17.11■□□□□ 0.33
DDX55-210ENST00000543016 CDC42BPGQ6DT37 1551 aa17.11■□□□□ 0.33
DDX55-210ENST00000543016 ST20-MTHFSA0A0A6YYL1 179 aa17.11■□□□□ 0.33
DDX55-210ENST00000543016 WASLO00401 505 aaPredicted RBP17.11■□□□□ 0.33
DDX55-210ENST00000543016 MINK1Q8N4C8 1332 aaPredicted RBP17.11■□□□□ 0.33
DDX55-210ENST00000543016 PUS7Q96PZ0 661 aaKnown RBP17.1■□□□□ 0.33
DDX55-210ENST00000543016 EVC2Q86UK5 1308 aa17.1■□□□□ 0.33
DDX55-210ENST00000543016 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.1■□□□□ 0.33
DDX55-210ENST00000543016 SLAIN2Q9P270 581 aa17.09■□□□□ 0.33
DDX55-210ENST00000543016 NALCNQ8IZF0 1738 aa17.08■□□□□ 0.32
DDX55-210ENST00000543016 UBAP1LF5GYI3 381 aa17.08■□□□□ 0.32
DDX55-210ENST00000543016 TESK2Q96S53 571 aa17.08■□□□□ 0.32
DDX55-210ENST00000543016 ANKARQ7Z5J8 1434 aa17.07■□□□□ 0.32
DDX55-210ENST00000543016 CDCA8Q53HL2 280 aa17.07■□□□□ 0.32
DDX55-210ENST00000543016 TMF1P82094 1093 aa17.06■□□□□ 0.32
DDX55-210ENST00000543016 HIRIP3Q9BW71 556 aaPredicted RBP17.06■□□□□ 0.32
DDX55-210ENST00000543016 CDK19Q9BWU1 502 aa17.06■□□□□ 0.32
DDX55-210ENST00000543016 QRICH2Q9H0J4 1663 aa17.06■□□□□ 0.32
DDX55-210ENST00000543016 HSPA5P11021 654 aaKnown RBP17.05■□□□□ 0.32
DDX55-210ENST00000543016 MST1RQ04912 1400 aa17.04■□□□□ 0.32
DDX55-210ENST00000543016 SRPK2P78362 688 aaKnown RBP17.03■□□□□ 0.32
DDX55-210ENST00000543016 C1orf167Q5SNV9 1468 aa17.03■□□□□ 0.32
DDX55-210ENST00000543016 TULP4Q9NRJ4 1543 aa17.02■□□□□ 0.32
DDX55-210ENST00000543016 CCDC61Q9Y6R9 512 aa17.02■□□□□ 0.32
DDX55-210ENST00000543016 ATAD2Q6PL18 1390 aa17.02■□□□□ 0.31
DDX55-210ENST00000543016 FMN2Q9NZ56 1722 aa17.01■□□□□ 0.31
DDX55-210ENST00000543016 FBXO41Q8TF61 875 aa17.01■□□□□ 0.31
DDX55-210ENST00000543016 NUDT16Q96DE0 195 aaKnown RBP17.01■□□□□ 0.31
DDX55-210ENST00000543016 ESCO1Q5FWF5 840 aa16.99■□□□□ 0.31
DDX55-210ENST00000543016 CABP2Q9NPB3 220 aa16.99■□□□□ 0.31
DDX55-210ENST00000543016 BRINP3Q76B58 766 aa16.98■□□□□ 0.31
DDX55-210ENST00000543016 NINLQ9Y2I6 1382 aa16.98■□□□□ 0.31
DDX55-210ENST00000543016 PRR36Q9H6K5 1346 aa16.97■□□□□ 0.31
DDX55-210ENST00000543016 PLEKHG3A1L390 1219 aa16.97■□□□□ 0.31
DDX55-210ENST00000543016 NUTM2FA1L443 756 aa16.97■□□□□ 0.31
DDX55-210ENST00000543016 PHF8Q9UPP1 1060 aa16.97■□□□□ 0.31
DDX55-210ENST00000543016 ATP7BP35670 1465 aa16.97■□□□□ 0.31
DDX55-210ENST00000543016 PIP4K2BP78356 416 aa16.96■□□□□ 0.31
DDX55-210ENST00000543016 ORAI2Q96SN7 254 aa16.96■□□□□ 0.31
DDX55-210ENST00000543016 NPHP3Q7Z494 1330 aa16.95■□□□□ 0.3
DDX55-210ENST00000543016 SCAF1Q9H7N4 1312 aaKnown RBP16.95■□□□□ 0.3
DDX55-210ENST00000543016 DISP3Q9P2K9 1392 aa16.94■□□□□ 0.3
DDX55-210ENST00000543016 KIF1AQ12756 1690 aa16.93■□□□□ 0.3
DDX55-210ENST00000543016 USP32Q8NFA0 1604 aa16.92■□□□□ 0.3
DDX55-210ENST00000543016 NGDNQ8NEJ9 315 aaKnown RBP16.92■□□□□ 0.3
DDX55-210ENST00000543016 ZNF692Q9BU19 519 aaPredicted RBP16.92■□□□□ 0.3
DDX55-210ENST00000543016 CABP1Q9NZU7 370 aa16.92■□□□□ 0.3
DDX55-210ENST00000543016 PPIP5K1Q6PFW1 1433 aa16.92■□□□□ 0.3
DDX55-210ENST00000543016 ITSN1Q15811 1721 aa16.92■□□□□ 0.3
DDX55-210ENST00000543016 POLR3AO14802 1390 aaPredicted RBP16.91■□□□□ 0.3
DDX55-210ENST00000543016 BRD4O60885 1362 aaPredicted RBP16.91■□□□□ 0.3
DDX55-210ENST00000543016 PSME1Q06323 249 aa16.91■□□□□ 0.3
DDX55-210ENST00000543016 MAPK8IP2Q13387 824 aaPredicted RBP16.91■□□□□ 0.3
DDX55-210ENST00000543016 ROBO1Q9Y6N7 1651 aa16.91■□□□□ 0.3
DDX55-210ENST00000543016 FOXO3O43524 673 aa16.9■□□□□ 0.3
DDX55-210ENST00000543016 TERF2IPQ9NYB0 399 aa16.9■□□□□ 0.3
DDX55-210ENST00000543016 PMFBP1Q8TBY8 1022 aa16.89■□□□□ 0.29
DDX55-210ENST00000543016 TMC1Q8TDI8 760 aa16.89■□□□□ 0.29
DDX55-210ENST00000543016 ACEP12821 1306 aa16.89■□□□□ 0.29
DDX55-210ENST00000543016 SOS2Q07890 1332 aaPredicted RBP16.89■□□□□ 0.29
DDX55-210ENST00000543016 AHDC1Q5TGY3 1603 aaPredicted RBP16.88■□□□□ 0.29
DDX55-210ENST00000543016 TOPAZ1Q8N9V7 1692 aa16.88■□□□□ 0.29
DDX55-210ENST00000543016 HDGFL2Q7Z4V5 671 aaPredicted RBP16.88■□□□□ 0.29
DDX55-210ENST00000543016 SLC12A5Q9H2X9 1139 aa16.87■□□□□ 0.29
DDX55-210ENST00000543016 RGPD8O14715 1765 aaPredicted RBP16.87■□□□□ 0.29
DDX55-210ENST00000543016 C11orf95C9JLR9 678 aaPredicted RBP16.86■□□□□ 0.29
DDX55-210ENST00000543016 KRT28Q7Z3Y7 464 aa16.86■□□□□ 0.29
DDX55-210ENST00000543016 LRRC59Q96AG4 307 aaKnown RBP16.86■□□□□ 0.29
DDX55-210ENST00000543016 KIF7Q2M1P5 1343 aa16.86■□□□□ 0.29
DDX55-210ENST00000543016 SBNO1A3KN83 1393 aa16.86■□□□□ 0.29
DDX55-210ENST00000543016 CPSF1Q10570 1443 aaKnown RBP16.86■□□□□ 0.29
DDX55-210ENST00000543016 CCDC7Q96M83 1385 aa16.85■□□□□ 0.29
DDX55-210ENST00000543016 NHSL1Q5SYE7 1610 aa16.85■□□□□ 0.29
DDX55-210ENST00000543016 ANKRD36BQ8N2N9 1353 aa16.84■□□□□ 0.29
DDX55-210ENST00000543016 HSPA1LP34931 641 aa16.83■□□□□ 0.28
DDX55-210ENST00000543016 PXDNQ92626 1479 aa16.83■□□□□ 0.28
DDX55-210ENST00000543016 POLR3GLQ9BT43 218 aa16.83■□□□□ 0.28
DDX55-210ENST00000543016 USP6P35125 1406 aa16.82■□□□□ 0.28
DDX55-210ENST00000543016 KTN1Q86UP2 1357 aaKnown RBP16.82■□□□□ 0.28
DDX55-210ENST00000543016 WASHC2AQ641Q2 1341 aa16.82■□□□□ 0.28
DDX55-210ENST00000543016 DDX17Q92841 729 aaKnown RBP16.81■□□□□ 0.28
DDX55-210ENST00000543016 ARHGEF10O15013 1369 aa16.8■□□□□ 0.28
DDX55-210ENST00000543016 SPATA31A3Q5VYP0 1347 aa16.8■□□□□ 0.28
DDX55-210ENST00000543016 TTC21AQ8NDW8 1320 aa16.8■□□□□ 0.28
DDX55-210ENST00000543016 CD163L1Q9NR16 1453 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms