RNA–Protein interactions for RNA: ENST00000539204.5

YBX3-207, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 649 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-207ENST00000539204 SEPT12Q8IYM1 358 aa18.54■□□□□ 0.56
YBX3-207ENST00000539204 ROBO2Q9HCK4 1378 aa18.54■□□□□ 0.56
YBX3-207ENST00000539204 COL22A1Q8NFW1 1626 aaPredicted RBP18.53■□□□□ 0.56
YBX3-207ENST00000539204 PSDA5PKW4 1024 aaPredicted RBP18.53■□□□□ 0.56
YBX3-207ENST00000539204 XPCQ01831 940 aaPredicted RBP18.53■□□□□ 0.56
YBX3-207ENST00000539204 HRCP23327 699 aa18.52■□□□□ 0.56
YBX3-207ENST00000539204 RALGAPBQ86X10 1494 aa18.52■□□□□ 0.55
YBX3-207ENST00000539204 VGFO15240 615 aaPredicted RBP18.51■□□□□ 0.55
YBX3-207ENST00000539204 IQGAP3Q86VI3 1631 aa18.51■□□□□ 0.55
YBX3-207ENST00000539204 LRPPRCP42704 1394 aaKnown RBP18.5■□□□□ 0.55
YBX3-207ENST00000539204 LRP5O75197 1615 aa18.49■□□□□ 0.55
YBX3-207ENST00000539204 BAG6P46379 1132 aa18.49■□□□□ 0.55
YBX3-207ENST00000539204 KRT27Q7Z3Y8 459 aa18.49■□□□□ 0.55
YBX3-207ENST00000539204 ROCK1Q13464 1354 aa18.48■□□□□ 0.55
YBX3-207ENST00000539204 ONECUT3O60422 494 aaPredicted RBP18.48■□□□□ 0.55
YBX3-207ENST00000539204 VPS72Q15906 364 aa18.47■□□□□ 0.55
YBX3-207ENST00000539204 CCDC9Q9Y3X0 531 aaKnown RBP18.47■□□□□ 0.55
YBX3-207ENST00000539204 HFM1A2PYH4 1435 aa18.47■□□□□ 0.55
YBX3-207ENST00000539204 SLIT2O94813 1529 aa18.46■□□□□ 0.55
YBX3-207ENST00000539204 GLI3P10071 1580 aa18.46■□□□□ 0.55
YBX3-207ENST00000539204 PXDNQ92626 1479 aa18.46■□□□□ 0.54
YBX3-207ENST00000539204 MARF1Q9Y4F3 1742 aaKnown RBP18.44■□□□□ 0.54
YBX3-207ENST00000539204 NUTM2FA1L443 756 aa18.44■□□□□ 0.54
YBX3-207ENST00000539204 HAP1P54257 671 aaPredicted RBP18.44■□□□□ 0.54
YBX3-207ENST00000539204 NEXMIFQ5QGS0 1516 aa18.44■□□□□ 0.54
YBX3-207ENST00000539204 SPATA31A3Q5VYP0 1347 aa18.43■□□□□ 0.54
YBX3-207ENST00000539204 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.42■□□□□ 0.54
YBX3-207ENST00000539204 A0A0G2JS52 829 aa18.41■□□□□ 0.54
YBX3-207ENST00000539204 ITGAEP38570 1179 aa18.41■□□□□ 0.54
YBX3-207ENST00000539204 MYT1Q01538 1121 aa18.41■□□□□ 0.54
YBX3-207ENST00000539204 EN1Q05925 392 aaPredicted RBP18.41■□□□□ 0.54
YBX3-207ENST00000539204 KRT28Q7Z3Y7 464 aa18.41■□□□□ 0.54
YBX3-207ENST00000539204 BRWD3Q6RI45 1802 aa18.41■□□□□ 0.54
YBX3-207ENST00000539204 R3HDM1Q15032 1099 aaKnown RBP18.4■□□□□ 0.54
YBX3-207ENST00000539204 RPGRIP1LQ68CZ1 1315 aa18.4■□□□□ 0.54
YBX3-207ENST00000539204 SPHKAPQ2M3C7 1700 aa18.4■□□□□ 0.54
YBX3-207ENST00000539204 PRAG1Q86YV5 1406 aa18.4■□□□□ 0.54
YBX3-207ENST00000539204 YY1P25490 414 aa18.39■□□□□ 0.53
YBX3-207ENST00000539204 PLEKHG5O94827 1062 aa18.37■□□□□ 0.53
YBX3-207ENST00000539204 PSME1Q06323 249 aa18.37■□□□□ 0.53
YBX3-207ENST00000539204 WAPLQ7Z5K2 1190 aa18.37■□□□□ 0.53
YBX3-207ENST00000539204 CABLES1Q8TDN4 633 aa18.37■□□□□ 0.53
YBX3-207ENST00000539204 STK26Q9P289 416 aa18.35■□□□□ 0.53
YBX3-207ENST00000539204 FAM98CQ17RN3 349 aaKnown RBP18.34■□□□□ 0.53
YBX3-207ENST00000539204 CDC42BPGQ6DT37 1551 aa18.34■□□□□ 0.53
YBX3-207ENST00000539204 NAIPQ13075 1403 aa18.33■□□□□ 0.53
YBX3-207ENST00000539204 FAM83GA6ND36 823 aa18.33■□□□□ 0.52
YBX3-207ENST00000539204 LMOD2Q6P5Q4 547 aa18.33■□□□□ 0.52
YBX3-207ENST00000539204 CLTCL1P53675 1640 aa18.33■□□□□ 0.52
YBX3-207ENST00000539204 KIF1BO60333 1816 aa18.32■□□□□ 0.52
YBX3-207ENST00000539204 CCDC144AA2RUR9 1427 aa18.32■□□□□ 0.52
YBX3-207ENST00000539204 USP32Q8NFA0 1604 aa18.31■□□□□ 0.52
YBX3-207ENST00000539204 EZH2Q15910 746 aaKnown RBP18.3■□□□□ 0.52
YBX3-207ENST00000539204 FAM182BQ5T319 152 aa18.29■□□□□ 0.52
YBX3-207ENST00000539204 PHF8Q9UPP1 1060 aa18.29■□□□□ 0.52
YBX3-207ENST00000539204 DCAF8L1A6NGE4 600 aa18.28■□□□□ 0.52
YBX3-207ENST00000539204 BTG4Q9NY30 223 aa18.28■□□□□ 0.52
YBX3-207ENST00000539204 TNS3Q68CZ2 1445 aa18.26■□□□□ 0.51
YBX3-207ENST00000539204 TMEM132EQ6IEE7 984 aa18.25■□□□□ 0.51
YBX3-207ENST00000539204 CAMKK2Q96RR4 588 aa18.25■□□□□ 0.51
YBX3-207ENST00000539204 NWD2Q9ULI1 1742 aa18.25■□□□□ 0.51
YBX3-207ENST00000539204 ABCC11Q96J66 1382 aa18.25■□□□□ 0.51
YBX3-207ENST00000539204 SBNO1A3KN83 1393 aa18.24■□□□□ 0.51
YBX3-207ENST00000539204 ARHGEF10O15013 1369 aa18.24■□□□□ 0.51
YBX3-207ENST00000539204 PLEKHH1Q9ULM0 1364 aa18.24■□□□□ 0.51
YBX3-207ENST00000539204 ADGRF5Q8IZF2 1346 aa18.23■□□□□ 0.51
YBX3-207ENST00000539204 DISP2A7MBM2 1401 aa18.23■□□□□ 0.51
YBX3-207ENST00000539204 TECPR2O15040 1411 aa18.23■□□□□ 0.51
YBX3-207ENST00000539204 KIF1AQ12756 1690 aa18.22■□□□□ 0.51
YBX3-207ENST00000539204 PLCH1Q4KWH8 1693 aa18.22■□□□□ 0.51
YBX3-207ENST00000539204 TRIM37O94972 964 aa18.21■□□□□ 0.51
YBX3-207ENST00000539204 APBA3O96018 575 aa18.21■□□□□ 0.51
YBX3-207ENST00000539204 NBPF8Q3BBV2 869 aa18.21■□□□□ 0.51
YBX3-207ENST00000539204 NBPF14Q5TI25 921 aa18.21■□□□□ 0.51
YBX3-207ENST00000539204 FAM196AQ6ZSG2 479 aa18.21■□□□□ 0.51
YBX3-207ENST00000539204 PPP1R1BQ9UD71 204 aaPredicted RBP18.21■□□□□ 0.51
YBX3-207ENST00000539204 SPATA31A5Q5VU36 1347 aa18.21■□□□□ 0.51
YBX3-207ENST00000539204 SPATA31A7Q8IWB4 1347 aa18.21■□□□□ 0.51
YBX3-207ENST00000539204 SIRT1Q96EB6 747 aa18.2■□□□□ 0.5
YBX3-207ENST00000539204 RGPD1P0DJD0 1748 aa18.2■□□□□ 0.5
YBX3-207ENST00000539204 RGL3Q3MIN7 710 aa18.19■□□□□ 0.5
YBX3-207ENST00000539204 PMFBP1Q8TBY8 1022 aa18.18■□□□□ 0.5
YBX3-207ENST00000539204 SLC4A1APQ9BWU0 796 aaKnown RBP18.18■□□□□ 0.5
YBX3-207ENST00000539204 FMN2Q9NZ56 1722 aa18.17■□□□□ 0.5
YBX3-207ENST00000539204 PPLO60437 1756 aa18.17■□□□□ 0.5
YBX3-207ENST00000539204 PARD3Q8TEW0 1356 aa18.17■□□□□ 0.5
YBX3-207ENST00000539204 SPON1Q9HCB6 807 aa18.16■□□□□ 0.5
YBX3-207ENST00000539204 NRXN1Q9ULB1 1477 aa18.14■□□□□ 0.5
YBX3-207ENST00000539204 KCNQ2O43526 872 aa18.14■□□□□ 0.49
YBX3-207ENST00000539204 YTHDC2Q9H6S0 1430 aaKnown RBP18.14■□□□□ 0.49
YBX3-207ENST00000539204 RRBP1Q9P2E9 1410 aaKnown RBP18.14■□□□□ 0.49
YBX3-207ENST00000539204 ANKRD30BQ9BXX2 1392 aa18.13■□□□□ 0.49
YBX3-207ENST00000539204 PDE3BQ13370 1112 aa18.11■□□□□ 0.49
YBX3-207ENST00000539204 SAFB2Q14151 953 aaKnown RBP eCLIP18.11■□□□□ 0.49
YBX3-207ENST00000539204 PRDM11Q9NQV5 511 aa18.11■□□□□ 0.49
YBX3-207ENST00000539204 SPATA31A1Q5TZJ5 1347 aa18.11■□□□□ 0.49
YBX3-207ENST00000539204 RGPD8O14715 1765 aaPredicted RBP18.1■□□□□ 0.49
YBX3-207ENST00000539204 NRAPQ86VF7 1730 aa18.1■□□□□ 0.49
YBX3-207ENST00000539204 GPRASP1Q5JY77 1395 aa18.1■□□□□ 0.49
YBX3-207ENST00000539204 ADGRB2O60241 1585 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms