RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 PLIN1O60240 522 aa13.66□□□□□ -0.22
CLSTN3-207ENST00000537408 ATP7AQ04656 1500 aa13.65□□□□□ -0.22
CLSTN3-207ENST00000537408 A0A0G2JS52 829 aa13.65□□□□□ -0.22
CLSTN3-207ENST00000537408 DNTTIP2Q5QJE6 756 aaKnown RBP13.65□□□□□ -0.22
CLSTN3-207ENST00000537408 SLC26A8Q96RN1 970 aa13.65□□□□□ -0.22
CLSTN3-207ENST00000537408 KDM2BQ8NHM5 1336 aa13.64□□□□□ -0.23
CLSTN3-207ENST00000537408 SKOR2Q2VWA4 1001 aaPredicted RBP13.64□□□□□ -0.23
CLSTN3-207ENST00000537408 FTSJ3Q8IY81 847 aaKnown RBP13.63□□□□□ -0.23
CLSTN3-207ENST00000537408 ABCC5O15440 1437 aa13.63□□□□□ -0.23
CLSTN3-207ENST00000537408 TTC37Q6PGP7 1564 aa13.63□□□□□ -0.23
CLSTN3-207ENST00000537408 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.62□□□□□ -0.23
CLSTN3-207ENST00000537408 KDM4FA0A1W2PPD8 638 aa13.62□□□□□ -0.23
CLSTN3-207ENST00000537408 NCKAP5LQ9HCH0 1330 aa13.62□□□□□ -0.23
CLSTN3-207ENST00000537408 DUOX2Q9NRD8 1548 aa13.61□□□□□ -0.23
CLSTN3-207ENST00000537408 ROCK1Q13464 1354 aa13.61□□□□□ -0.23
CLSTN3-207ENST00000537408 BRD4O60885 1362 aaPredicted RBP13.61□□□□□ -0.23
CLSTN3-207ENST00000537408 SAFB2Q14151 953 aaKnown RBP eCLIP13.61□□□□□ -0.23
CLSTN3-207ENST00000537408 ANTXR1Q9H6X2 564 aa13.61□□□□□ -0.23
CLSTN3-207ENST00000537408 ZBTB7CA1YPR0 619 aa13.6□□□□□ -0.23
CLSTN3-207ENST00000537408 GBP4Q96PP9 640 aa13.6□□□□□ -0.23
CLSTN3-207ENST00000537408 MAPK8IP3Q9UPT6 1336 aa13.6□□□□□ -0.23
CLSTN3-207ENST00000537408 IDI1Q13907 227 aa13.6□□□□□ -0.23
CLSTN3-207ENST00000537408 NASPP49321 788 aaPredicted RBP13.59□□□□□ -0.23
CLSTN3-207ENST00000537408 PTPN23Q9H3S7 1636 aa13.59□□□□□ -0.23
CLSTN3-207ENST00000537408 HECW2Q9P2P5 1572 aa13.59□□□□□ -0.23
CLSTN3-207ENST00000537408 RALBP1Q15311 655 aa13.59□□□□□ -0.23
CLSTN3-207ENST00000537408 SASS6Q6UVJ0 657 aa13.59□□□□□ -0.23
CLSTN3-207ENST00000537408 ERBINQ96RT1 1412 aa13.59□□□□□ -0.23
CLSTN3-207ENST00000537408 LMTK3Q96Q04 1460 aa13.58□□□□□ -0.23
CLSTN3-207ENST00000537408 MYBBP1AQ9BQG0 1328 aaKnown RBP13.58□□□□□ -0.23
CLSTN3-207ENST00000537408 SPRYD3Q8NCJ5 442 aa13.58□□□□□ -0.24
CLSTN3-207ENST00000537408 L3MBTL2Q969R5 705 aa13.58□□□□□ -0.24
CLSTN3-207ENST00000537408 KLHL34Q8N239 644 aa13.58□□□□□ -0.24
CLSTN3-207ENST00000537408 ROCK2O75116 1388 aaKnown RBP13.58□□□□□ -0.24
CLSTN3-207ENST00000537408 PLCD3Q8N3E9 789 aa13.58□□□□□ -0.24
CLSTN3-207ENST00000537408 HS1BP3Q53T59 392 aa13.57□□□□□ -0.24
CLSTN3-207ENST00000537408 TMEM51Q9NW97 253 aa13.57□□□□□ -0.24
CLSTN3-207ENST00000537408 ABCC1P33527 1531 aa13.57□□□□□ -0.24
CLSTN3-207ENST00000537408 GOLGA6L22H0YM25 854 aa13.57□□□□□ -0.24
CLSTN3-207ENST00000537408 SRPK2P78362 688 aaKnown RBP13.57□□□□□ -0.24
CLSTN3-207ENST00000537408 LRPPRCP42704 1394 aaKnown RBP13.57□□□□□ -0.24
CLSTN3-207ENST00000537408 ZSCAN20P17040 1043 aaPredicted RBP13.56□□□□□ -0.24
CLSTN3-207ENST00000537408 CDCA8Q53HL2 280 aa13.56□□□□□ -0.24
CLSTN3-207ENST00000537408 HFM1A2PYH4 1435 aa13.56□□□□□ -0.24
CLSTN3-207ENST00000537408 PPP1R9BQ96SB3 815 aa13.56□□□□□ -0.24
CLSTN3-207ENST00000537408 RPGRIP1LQ68CZ1 1315 aa13.56□□□□□ -0.24
CLSTN3-207ENST00000537408 COL17A1Q9UMD9 1497 aaPredicted RBP13.56□□□□□ -0.24
CLSTN3-207ENST00000537408 VGLL3A8MV65 326 aa13.56□□□□□ -0.24
CLSTN3-207ENST00000537408 NGDNQ8NEJ9 315 aaKnown RBP13.56□□□□□ -0.24
CLSTN3-207ENST00000537408 TBC1D2Q9BYX2 928 aa13.55□□□□□ -0.24
CLSTN3-207ENST00000537408 CCDC9Q9Y3X0 531 aaKnown RBP13.55□□□□□ -0.24
CLSTN3-207ENST00000537408 HSCBQ8IWL3 235 aa13.55□□□□□ -0.24
CLSTN3-207ENST00000537408 AMER1Q5JTC6 1135 aaPredicted RBP13.54□□□□□ -0.24
CLSTN3-207ENST00000537408 PTPRMP28827 1452 aa13.54□□□□□ -0.24
CLSTN3-207ENST00000537408 PREX2Q70Z35 1606 aa13.53□□□□□ -0.24
CLSTN3-207ENST00000537408 CADPS2Q86UW7 1296 aa13.53□□□□□ -0.24
CLSTN3-207ENST00000537408 MSH6P52701 1360 aa13.52□□□□□ -0.24
CLSTN3-207ENST00000537408 ZNF500O60304 480 aaPredicted RBP13.52□□□□□ -0.24
CLSTN3-207ENST00000537408 MCM5P33992 734 aa13.52□□□□□ -0.24
CLSTN3-207ENST00000537408 NUTM2FA1L443 756 aa13.52□□□□□ -0.25
CLSTN3-207ENST00000537408 CBX1P83916 185 aa13.52□□□□□ -0.25
CLSTN3-207ENST00000537408 ZNF771Q7L3S4 317 aaPredicted RBP13.52□□□□□ -0.25
CLSTN3-207ENST00000537408 MAP3K4Q9Y6R4 1608 aa13.52□□□□□ -0.25
CLSTN3-207ENST00000537408 SHANK2Q9UPX8 1470 aa13.52□□□□□ -0.25
CLSTN3-207ENST00000537408 CDCA7LQ96GN5 454 aa13.52□□□□□ -0.25
CLSTN3-207ENST00000537408 BRD2P25440 801 aaKnown RBP13.51□□□□□ -0.25
CLSTN3-207ENST00000537408 IRX3P78415 501 aaPredicted RBP13.51□□□□□ -0.25
CLSTN3-207ENST00000537408 ZNF830Q96NB3 372 aaPredicted RBP13.51□□□□□ -0.25
CLSTN3-207ENST00000537408 CGNQ9P2M7 1197 aaKnown RBP13.51□□□□□ -0.25
CLSTN3-207ENST00000537408 SAMD9LQ8IVG5 1584 aa13.51□□□□□ -0.25
CLSTN3-207ENST00000537408 USP19O94966 1318 aa13.5□□□□□ -0.25
CLSTN3-207ENST00000537408 XPCQ01831 940 aaPredicted RBP13.5□□□□□ -0.25
CLSTN3-207ENST00000537408 NLRP13Q86W25 1043 aa13.5□□□□□ -0.25
CLSTN3-207ENST00000537408 NOL7Q9UMY1 257 aaKnown RBP13.5□□□□□ -0.25
CLSTN3-207ENST00000537408 ARHGEF40Q8TER5 1519 aa13.5□□□□□ -0.25
CLSTN3-207ENST00000537408 TEX2Q8IWB9 1127 aa13.49□□□□□ -0.25
CLSTN3-207ENST00000537408 TBC1D32Q96NH3 1257 aa13.49□□□□□ -0.25
CLSTN3-207ENST00000537408 TRAK1Q9UPV9 953 aa13.49□□□□□ -0.25
CLSTN3-207ENST00000537408 C20orf194Q5TEA3 1177 aa13.49□□□□□ -0.25
CLSTN3-207ENST00000537408 CERKQ8TCT0 537 aa13.49□□□□□ -0.25
CLSTN3-207ENST00000537408 HMGN5P82970 282 aaKnown RBP13.48□□□□□ -0.25
CLSTN3-207ENST00000537408 EIF3AQ14152 1382 aaKnown RBP13.48□□□□□ -0.25
CLSTN3-207ENST00000537408 DNAJC2Q99543 621 aaKnown RBP13.48□□□□□ -0.25
CLSTN3-207ENST00000537408 PSME1Q06323 249 aa13.47□□□□□ -0.25
CLSTN3-207ENST00000537408 CCDC66A2RUB6 948 aa13.47□□□□□ -0.25
CLSTN3-207ENST00000537408 ZFP91Q96JP5 570 aaPredicted RBP13.47□□□□□ -0.25
CLSTN3-207ENST00000537408 CCDC39Q9UFE4 941 aa13.47□□□□□ -0.25
CLSTN3-207ENST00000537408 ANKRD30BQ9BXX2 1392 aa13.47□□□□□ -0.25
CLSTN3-207ENST00000537408 AMOTL2Q9Y2J4 779 aa13.47□□□□□ -0.25
CLSTN3-207ENST00000537408 MBD5Q9P267 1494 aa13.46□□□□□ -0.26
CLSTN3-207ENST00000537408 TMF1P82094 1093 aa13.46□□□□□ -0.26
CLSTN3-207ENST00000537408 GAS2L3Q86XJ1 694 aa13.45□□□□□ -0.26
CLSTN3-207ENST00000537408 KNSTRNQ9Y448 316 aa13.45□□□□□ -0.26
CLSTN3-207ENST00000537408 NPATQ14207 1427 aa13.45□□□□□ -0.26
CLSTN3-207ENST00000537408 PTMAP06454 111 aaKnown RBP13.45□□□□□ -0.26
CLSTN3-207ENST00000537408 CIZ1Q9ULV3 898 aaPredicted RBP13.45□□□□□ -0.26
CLSTN3-207ENST00000537408 ARHGEF5Q12774 1597 aa13.45□□□□□ -0.26
CLSTN3-207ENST00000537408 ZKSCAN5Q9Y2L8 839 aa13.45□□□□□ -0.26
CLSTN3-207ENST00000537408 NBPF1Q3BBV0 1214 aa13.44□□□□□ -0.26
CLSTN3-207ENST00000537408 ESCO1Q5FWF5 840 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms