RNA–Protein interactions for RNA: ENST00000535717.1

CHD4-203, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-203ENST00000535717 TOM1O60784 492 aa17.18■□□□□ 0.34
CHD4-203ENST00000535717 SAFB2Q14151 953 aaKnown RBP eCLIP17.18■□□□□ 0.34
CHD4-203ENST00000535717 ATF3P18847 181 aa17.17■□□□□ 0.34
CHD4-203ENST00000535717 DCCP43146 1447 aa17.17■□□□□ 0.34
CHD4-203ENST00000535717 FBXO41Q8TF61 875 aa17.17■□□□□ 0.34
CHD4-203ENST00000535717 CARD11Q9BXL7 1154 aa17.17■□□□□ 0.34
CHD4-203ENST00000535717 CADPS2Q86UW7 1296 aa17.16■□□□□ 0.34
CHD4-203ENST00000535717 PIP4K2BP78356 416 aa17.14■□□□□ 0.33
CHD4-203ENST00000535717 SLAIN2Q9P270 581 aa17.14■□□□□ 0.33
CHD4-203ENST00000535717 CDC42BPGQ6DT37 1551 aa17.13■□□□□ 0.33
CHD4-203ENST00000535717 MINK1Q8N4C8 1332 aaPredicted RBP17.13■□□□□ 0.33
CHD4-203ENST00000535717 HIRIP3Q9BW71 556 aaPredicted RBP17.12■□□□□ 0.33
CHD4-203ENST00000535717 CENPJQ9HC77 1338 aaPredicted RBP17.12■□□□□ 0.33
CHD4-203ENST00000535717 MST1RQ04912 1400 aa17.12■□□□□ 0.33
CHD4-203ENST00000535717 SCAF1Q9H7N4 1312 aaKnown RBP17.11■□□□□ 0.33
CHD4-203ENST00000535717 ADGRB2O60241 1585 aa17.11■□□□□ 0.33
CHD4-203ENST00000535717 EIF3AQ14152 1382 aaKnown RBP17.1■□□□□ 0.33
CHD4-203ENST00000535717 QRICH2Q9H0J4 1663 aa17.09■□□□□ 0.33
CHD4-203ENST00000535717 C1orf167Q5SNV9 1468 aa17.08■□□□□ 0.32
CHD4-203ENST00000535717 FMN2Q9NZ56 1722 aa17.07■□□□□ 0.32
CHD4-203ENST00000535717 NUTM2FA1L443 756 aa17.07■□□□□ 0.32
CHD4-203ENST00000535717 WASLO00401 505 aaPredicted RBP17.07■□□□□ 0.32
CHD4-203ENST00000535717 ILDR1Q86SU0 546 aaPredicted RBP17.07■□□□□ 0.32
CHD4-203ENST00000535717 ROBO1Q9Y6N7 1651 aa17.06■□□□□ 0.32
CHD4-203ENST00000535717 USP47Q96K76 1375 aa17.05■□□□□ 0.32
CHD4-203ENST00000535717 BRINP3Q76B58 766 aa17.05■□□□□ 0.32
CHD4-203ENST00000535717 ST20-MTHFSA0A0A6YYL1 179 aa17.04■□□□□ 0.32
CHD4-203ENST00000535717 ORAI2Q96SN7 254 aa17.04■□□□□ 0.32
CHD4-203ENST00000535717 CDK19Q9BWU1 502 aa17.04■□□□□ 0.32
CHD4-203ENST00000535717 SBNO2Q9Y2G9 1366 aa17.02■□□□□ 0.32
CHD4-203ENST00000535717 TULP4Q9NRJ4 1543 aa17.02■□□□□ 0.32
CHD4-203ENST00000535717 USP32Q8NFA0 1604 aa17.02■□□□□ 0.31
CHD4-203ENST00000535717 PRR36Q9H6K5 1346 aa17.01■□□□□ 0.31
CHD4-203ENST00000535717 ESCO1Q5FWF5 840 aa17.01■□□□□ 0.31
CHD4-203ENST00000535717 TESK2Q96S53 571 aa17.01■□□□□ 0.31
CHD4-203ENST00000535717 ANKARQ7Z5J8 1434 aa17.01■□□□□ 0.31
CHD4-203ENST00000535717 RGPD8O14715 1765 aaPredicted RBP17■□□□□ 0.31
CHD4-203ENST00000535717 HSPA1LP34931 641 aa17■□□□□ 0.31
CHD4-203ENST00000535717 EVC2Q86UK5 1308 aa16.99■□□□□ 0.31
CHD4-203ENST00000535717 NUDT16Q96DE0 195 aaKnown RBP16.99■□□□□ 0.31
CHD4-203ENST00000535717 CABP2Q9NPB3 220 aa16.99■□□□□ 0.31
CHD4-203ENST00000535717 ATP7BP35670 1465 aa16.99■□□□□ 0.31
CHD4-203ENST00000535717 SRPK2P78362 688 aaKnown RBP16.98■□□□□ 0.31
CHD4-203ENST00000535717 EIF4G2P78344 907 aaKnown RBP eCLIP16.97■□□□□ 0.31
CHD4-203ENST00000535717 DDX17Q92841 729 aaKnown RBP16.97■□□□□ 0.31
CHD4-203ENST00000535717 AHDC1Q5TGY3 1603 aaPredicted RBP16.96■□□□□ 0.31
CHD4-203ENST00000535717 HSPA5P11021 654 aaKnown RBP16.96■□□□□ 0.31
CHD4-203ENST00000535717 PHF8Q9UPP1 1060 aa16.96■□□□□ 0.31
CHD4-203ENST00000535717 NHSL1Q5SYE7 1610 aa16.96■□□□□ 0.3
CHD4-203ENST00000535717 PHLPP1O60346 1717 aa16.95■□□□□ 0.3
CHD4-203ENST00000535717 KIF1AQ12756 1690 aa16.94■□□□□ 0.3
CHD4-203ENST00000535717 FOXO3O43524 673 aa16.94■□□□□ 0.3
CHD4-203ENST00000535717 PMFBP1Q8TBY8 1022 aa16.94■□□□□ 0.3
CHD4-203ENST00000535717 CCDC61Q9Y6R9 512 aa16.94■□□□□ 0.3
CHD4-203ENST00000535717 SLC24A1O60721 1099 aa16.93■□□□□ 0.3
CHD4-203ENST00000535717 TOPAZ1Q8N9V7 1692 aa16.93■□□□□ 0.3
CHD4-203ENST00000535717 ITSN1Q15811 1721 aa16.93■□□□□ 0.3
CHD4-203ENST00000535717 DISP3Q9P2K9 1392 aa16.92■□□□□ 0.3
CHD4-203ENST00000535717 NPHP3Q7Z494 1330 aa16.92■□□□□ 0.3
CHD4-203ENST00000535717 COL16A1Q07092 1604 aaPredicted RBP16.92■□□□□ 0.3
CHD4-203ENST00000535717 PPIP5K1Q6PFW1 1433 aa16.91■□□□□ 0.3
CHD4-203ENST00000535717 PLEKHG3A1L390 1219 aa16.91■□□□□ 0.3
CHD4-203ENST00000535717 TMF1P82094 1093 aa16.91■□□□□ 0.3
CHD4-203ENST00000535717 XPCQ01831 940 aaPredicted RBP16.91■□□□□ 0.3
CHD4-203ENST00000535717 SOS2Q07890 1332 aaPredicted RBP16.91■□□□□ 0.3
CHD4-203ENST00000535717 PUS7Q96PZ0 661 aaKnown RBP16.9■□□□□ 0.3
CHD4-203ENST00000535717 CABP1Q9NZU7 370 aa16.9■□□□□ 0.3
CHD4-203ENST00000535717 PXDNQ92626 1479 aa16.9■□□□□ 0.3
CHD4-203ENST00000535717 ATAD2Q6PL18 1390 aa16.89■□□□□ 0.3
CHD4-203ENST00000535717 ZEB1P37275 1124 aaPredicted RBP16.89■□□□□ 0.29
CHD4-203ENST00000535717 NGDNQ8NEJ9 315 aaKnown RBP16.89■□□□□ 0.29
CHD4-203ENST00000535717 PSME1Q06323 249 aa16.88■□□□□ 0.29
CHD4-203ENST00000535717 KRT28Q7Z3Y7 464 aa16.88■□□□□ 0.29
CHD4-203ENST00000535717 ACEP12821 1306 aa16.88■□□□□ 0.29
CHD4-203ENST00000535717 POLR3AO14802 1390 aaPredicted RBP16.88■□□□□ 0.29
CHD4-203ENST00000535717 PHF23Q9BUL5 403 aaPredicted RBP16.87■□□□□ 0.29
CHD4-203ENST00000535717 LRRC59Q96AG4 307 aaKnown RBP16.86■□□□□ 0.29
CHD4-203ENST00000535717 CDCA8Q53HL2 280 aa16.85■□□□□ 0.29
CHD4-203ENST00000535717 TMC1Q8TDI8 760 aa16.84■□□□□ 0.29
CHD4-203ENST00000535717 SLC12A5Q9H2X9 1139 aa16.84■□□□□ 0.29
CHD4-203ENST00000535717 JCADQ9P266 1359 aa16.84■□□□□ 0.29
CHD4-203ENST00000535717 C11orf95C9JLR9 678 aaPredicted RBP16.83■□□□□ 0.28
CHD4-203ENST00000535717 TRPM3Q9HCF6 1732 aaPredicted RBP16.82■□□□□ 0.28
CHD4-203ENST00000535717 SBNO1A3KN83 1393 aa16.82■□□□□ 0.28
CHD4-203ENST00000535717 SPATA31A3Q5VYP0 1347 aa16.82■□□□□ 0.28
CHD4-203ENST00000535717 CD163L1Q9NR16 1453 aa16.81■□□□□ 0.28
CHD4-203ENST00000535717 CPSF1Q10570 1443 aaKnown RBP16.81■□□□□ 0.28
CHD4-203ENST00000535717 PNPLA6Q8IY17 1366 aa16.81■□□□□ 0.28
CHD4-203ENST00000535717 SHPRHQ149N8 1683 aa16.81■□□□□ 0.28
CHD4-203ENST00000535717 TNS3Q68CZ2 1445 aa16.8■□□□□ 0.28
CHD4-203ENST00000535717 NINLQ9Y2I6 1382 aa16.8■□□□□ 0.28
CHD4-203ENST00000535717 USP6P35125 1406 aa16.79■□□□□ 0.28
CHD4-203ENST00000535717 AKAP12Q02952 1782 aa16.79■□□□□ 0.28
CHD4-203ENST00000535717 PAK3O75914 559 aaPredicted RBP16.79■□□□□ 0.28
CHD4-203ENST00000535717 ZNF692Q9BU19 519 aaPredicted RBP16.79■□□□□ 0.28
CHD4-203ENST00000535717 POLR3GLQ9BT43 218 aa16.78■□□□□ 0.28
CHD4-203ENST00000535717 TERF2IPQ9NYB0 399 aa16.78■□□□□ 0.28
CHD4-203ENST00000535717 SSH2Q76I76 1423 aa16.78■□□□□ 0.28
CHD4-203ENST00000535717 KTN1Q86UP2 1357 aaKnown RBP16.77■□□□□ 0.28
CHD4-203ENST00000535717 LMOD2Q6P5Q4 547 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms