RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 LARP6Q9BRS8 491 aaKnown RBP10.88□□□□□ -0.67
CD44-228ENST00000528455 TMEM92Q6UXU6 159 aa10.87□□□□□ -0.67
CD44-228ENST00000528455 GPHNQ9NQX3 736 aaPredicted RBP10.87□□□□□ -0.67
CD44-228ENST00000528455 MFSD10Q14728 455 aa10.86□□□□□ -0.67
CD44-228ENST00000528455 MPHOSPH9Q99550 1183 aa10.86□□□□□ -0.67
CD44-228ENST00000528455 ZMYM3Q14202 1370 aa10.86□□□□□ -0.67
CD44-228ENST00000528455 C3P01024 1663 aa10.85□□□□□ -0.67
CD44-228ENST00000528455 PREX1Q8TCU6 1659 aa10.85□□□□□ -0.67
CD44-228ENST00000528455 UHRF1BP1Q6BDS2 1440 aa10.85□□□□□ -0.67
CD44-228ENST00000528455 EIF2AK4Q9P2K8 1649 aaKnown RBP10.85□□□□□ -0.67
CD44-228ENST00000528455 KIF3CO14782 793 aa10.85□□□□□ -0.67
CD44-228ENST00000528455 WDR70Q9NW82 654 aa10.85□□□□□ -0.67
CD44-228ENST00000528455 NUP155O75694 1391 aa10.85□□□□□ -0.67
CD44-228ENST00000528455 C2orf72A6NCS6 295 aa10.84□□□□□ -0.67
CD44-228ENST00000528455 C3orf67Q6ZVT6 689 aa10.84□□□□□ -0.67
CD44-228ENST00000528455 CLSPNQ9HAW4 1339 aa10.84□□□□□ -0.67
CD44-228ENST00000528455 KANK1Q14678 1352 aa10.83□□□□□ -0.68
CD44-228ENST00000528455 TMC2Q8TDI7 906 aa10.83□□□□□ -0.68
CD44-228ENST00000528455 MROH2AA6NES4 1674 aa10.82□□□□□ -0.68
CD44-228ENST00000528455 CCER1Q8TC90 406 aaPredicted RBP10.82□□□□□ -0.68
CD44-228ENST00000528455 DDX27Q96GQ7 796 aaKnown RBP10.82□□□□□ -0.68
CD44-228ENST00000528455 NPATQ14207 1427 aa10.82□□□□□ -0.68
CD44-228ENST00000528455 DEPDC5O75140 1603 aa10.81□□□□□ -0.68
CD44-228ENST00000528455 CLTCQ00610 1675 aaKnown RBP10.81□□□□□ -0.68
CD44-228ENST00000528455 WASHC2CQ9Y4E1 1318 aa10.81□□□□□ -0.68
CD44-228ENST00000528455 DHX57Q6P158 1386 aaKnown RBP10.8□□□□□ -0.68
CD44-228ENST00000528455 FOXK1P85037 733 aa10.8□□□□□ -0.68
CD44-228ENST00000528455 DSG2Q14126 1118 aa10.8□□□□□ -0.68
CD44-228ENST00000528455 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.8□□□□□ -0.68
CD44-228ENST00000528455 UNC13BO14795 1591 aa10.8□□□□□ -0.68
CD44-228ENST00000528455 KDM5DQ9BY66 1539 aa10.79□□□□□ -0.68
CD44-228ENST00000528455 PPP1R15BQ5SWA1 713 aa10.79□□□□□ -0.68
CD44-228ENST00000528455 RNF17Q9BXT8 1623 aaKnown RBP10.79□□□□□ -0.68
CD44-228ENST00000528455 PZPP20742 1482 aa10.78□□□□□ -0.68
CD44-228ENST00000528455 VWDEQ8N2E2 1590 aa10.77□□□□□ -0.68
CD44-228ENST00000528455 IQGAP3Q86VI3 1631 aa10.77□□□□□ -0.68
CD44-228ENST00000528455 FAM135AQ9P2D6 1515 aa10.77□□□□□ -0.69
CD44-228ENST00000528455 PRDM15P57071 1507 aaPredicted RBP10.76□□□□□ -0.69
CD44-228ENST00000528455 LMTK2Q8IWU2 1503 aa10.76□□□□□ -0.69
CD44-228ENST00000528455 E2F4Q16254 413 aa10.76□□□□□ -0.69
CD44-228ENST00000528455 FBXO41Q8TF61 875 aa10.76□□□□□ -0.69
CD44-228ENST00000528455 STRCQ7RTU9 1775 aa10.75□□□□□ -0.69
CD44-228ENST00000528455 CAMK2BQ13554 666 aa10.75□□□□□ -0.69
CD44-228ENST00000528455 MAMSTRQ6ZN01 415 aa10.75□□□□□ -0.69
CD44-228ENST00000528455 PLPP6Q8IY26 295 aa10.75□□□□□ -0.69
CD44-228ENST00000528455 KCNV2Q8TDN2 545 aa10.75□□□□□ -0.69
CD44-228ENST00000528455 TIMELESSQ9UNS1 1208 aa10.75□□□□□ -0.69
CD44-228ENST00000528455 MROH1Q8NDA8 1641 aa10.75□□□□□ -0.69
CD44-228ENST00000528455 SCUBE2Q9NQ36 999 aa10.74□□□□□ -0.69
CD44-228ENST00000528455 ANKRD30BQ9BXX2 1392 aa10.74□□□□□ -0.69
CD44-228ENST00000528455 ARHGAP31Q2M1Z3 1444 aa10.74□□□□□ -0.69
CD44-228ENST00000528455 TET3O43151 1660 aa10.73□□□□□ -0.69
CD44-228ENST00000528455 ZEB1P37275 1124 aaPredicted RBP10.73□□□□□ -0.69
CD44-228ENST00000528455 FBXO31Q5XUX0 539 aaPredicted RBP10.73□□□□□ -0.69
CD44-228ENST00000528455 CERKQ8TCT0 537 aa10.73□□□□□ -0.69
CD44-228ENST00000528455 PTPRTO14522 1441 aa10.73□□□□□ -0.69
CD44-228ENST00000528455 ZC3H13Q5T200 1668 aaKnown RBP10.73□□□□□ -0.69
CD44-228ENST00000528455 LHX8Q68G74 356 aa10.72□□□□□ -0.69
CD44-228ENST00000528455 TNRQ92752 1358 aa10.72□□□□□ -0.69
CD44-228ENST00000528455 RPRD2Q5VT52 1461 aaKnown RBP10.72□□□□□ -0.69
CD44-228ENST00000528455 CAMSAP1Q5T5Y3 1602 aa10.72□□□□□ -0.69
CD44-228ENST00000528455 MYO3AQ8NEV4 1616 aa10.72□□□□□ -0.69
CD44-228ENST00000528455 ABCC3O15438 1527 aa10.71□□□□□ -0.69
CD44-228ENST00000528455 CFAP65Q6ZU64 1925 aaKnown RBP10.71□□□□□ -0.69
CD44-228ENST00000528455 CEP170BQ9Y4F5 1589 aaPredicted RBP10.71□□□□□ -0.69
CD44-228ENST00000528455 E9PCH4 1651 aa10.7□□□□□ -0.7
CD44-228ENST00000528455 A2ML1A8K2U0 1454 aa10.7□□□□□ -0.7
CD44-228ENST00000528455 PLA2R1Q13018 1463 aa10.7□□□□□ -0.7
CD44-228ENST00000528455 SLAIN1Q8ND83 568 aa10.7□□□□□ -0.7
CD44-228ENST00000528455 OTUD5Q96G74 571 aa10.7□□□□□ -0.7
CD44-228ENST00000528455 SIN3AQ96ST3 1273 aa10.7□□□□□ -0.7
CD44-228ENST00000528455 CEP152O94986 1710 aa10.7□□□□□ -0.7
CD44-228ENST00000528455 ZNF142P52746 1687 aaPredicted RBP10.69□□□□□ -0.7
CD44-228ENST00000528455 THEMISQ8N1K5 641 aaPredicted RBP10.69□□□□□ -0.7
CD44-228ENST00000528455 EMILIN3Q9NT22 766 aa10.69□□□□□ -0.7
CD44-228ENST00000528455 SLC52A1Q9NWF4 448 aa10.69□□□□□ -0.7
CD44-228ENST00000528455 NEUROD1Q13562 356 aa10.68□□□□□ -0.7
CD44-228ENST00000528455 ARHGEF1Q92888 912 aaKnown RBP10.68□□□□□ -0.7
CD44-228ENST00000528455 EFCAB6Q5THR3 1501 aa10.68□□□□□ -0.7
CD44-228ENST00000528455 NLRP1Q9C000 1473 aa10.68□□□□□ -0.7
CD44-228ENST00000528455 ARIH1Q9Y4X5 557 aaPredicted RBP10.67□□□□□ -0.7
CD44-228ENST00000528455 ANKLE2Q86XL3 938 aa10.66□□□□□ -0.7
CD44-228ENST00000528455 STAC3Q96MF2 364 aa10.66□□□□□ -0.7
CD44-228ENST00000528455 NOS1P29475 1434 aa10.66□□□□□ -0.7
CD44-228ENST00000528455 CCDC144AA2RUR9 1427 aa10.65□□□□□ -0.7
CD44-228ENST00000528455 SPHKAPQ2M3C7 1700 aa10.64□□□□□ -0.71
CD44-228ENST00000528455 IDI1Q13907 227 aa10.64□□□□□ -0.71
CD44-228ENST00000528455 BCANQ96GW7 911 aa10.64□□□□□ -0.71
CD44-228ENST00000528455 SPATA31D1Q6ZQQ2 1576 aa10.64□□□□□ -0.71
CD44-228ENST00000528455 UGGT1Q9NYU2 1555 aa10.64□□□□□ -0.71
CD44-228ENST00000528455 ERVK-7P63135 1459 aa10.63□□□□□ -0.71
CD44-228ENST00000528455 TRPM2O94759 1503 aa10.63□□□□□ -0.71
CD44-228ENST00000528455 PPP1R15AO75807 674 aaPredicted RBP10.62□□□□□ -0.71
CD44-228ENST00000528455 SLC34A2O95436 690 aa10.62□□□□□ -0.71
CD44-228ENST00000528455 OXER1Q8TDS5 423 aa10.62□□□□□ -0.71
CD44-228ENST00000528455 L3MBTL2Q969R5 705 aa10.62□□□□□ -0.71
CD44-228ENST00000528455 LTBP4Q8N2S1 1624 aa10.62□□□□□ -0.71
CD44-228ENST00000528455 ZNF335Q9H4Z2 1342 aaPredicted RBP10.61□□□□□ -0.71
CD44-228ENST00000528455 DPYSL4O14531 572 aa10.61□□□□□ -0.71
CD44-228ENST00000528455 KIF1BO60333 1816 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms