RNA–Protein interactions for RNA: ENST00000525970.5

CSDE1-211, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 503 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-211ENST00000525970 PRDM9Q9NQV7 894 aa9.73□□□□□ -0.85
CSDE1-211ENST00000525970 ZBTB24O43167 697 aaPredicted RBP9.72□□□□□ -0.85
CSDE1-211ENST00000525970 MMP16P51512 607 aa9.71□□□□□ -0.86
CSDE1-211ENST00000525970 MDM2Q00987 491 aaPredicted RBP9.71□□□□□ -0.86
CSDE1-211ENST00000525970 CRIPAKQ8N1N5 446 aa9.7□□□□□ -0.86
CSDE1-211ENST00000525970 TOR4AQ9NXH8 423 aa9.7□□□□□ -0.86
CSDE1-211ENST00000525970 CYP4X1Q8N118 509 aa9.69□□□□□ -0.86
CSDE1-211ENST00000525970 CCDC102AQ96A19 550 aa9.69□□□□□ -0.86
CSDE1-211ENST00000525970 ZNF775Q96BV0 537 aaPredicted RBP9.69□□□□□ -0.86
CSDE1-211ENST00000525970 USB1Q9BQ65 265 aaKnown RBP9.69□□□□□ -0.86
CSDE1-211ENST00000525970 AAASQ9NRG9 546 aa9.69□□□□□ -0.86
CSDE1-211ENST00000525970 AVPP01185 164 aa9.68□□□□□ -0.86
CSDE1-211ENST00000525970 CLCN1P35523 988 aa9.68□□□□□ -0.86
CSDE1-211ENST00000525970 DXOO77932 396 aaKnown RBP9.67□□□□□ -0.86
CSDE1-211ENST00000525970 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.67□□□□□ -0.86
CSDE1-211ENST00000525970 GPCPD1Q9NPB8 672 aa9.67□□□□□ -0.86
CSDE1-211ENST00000525970 HOXA2O43364 376 aa9.66□□□□□ -0.86
CSDE1-211ENST00000525970 WNT7AO00755 349 aa9.65□□□□□ -0.86
CSDE1-211ENST00000525970 ST8SIA5O15466 376 aa9.65□□□□□ -0.86
CSDE1-211ENST00000525970 CTC1Q2NKJ3 1217 aa9.65□□□□□ -0.86
CSDE1-211ENST00000525970 FAM217BQ9NTX9 383 aaPredicted RBP9.65□□□□□ -0.86
CSDE1-211ENST00000525970 TRIM32Q13049 653 aa9.64□□□□□ -0.87
CSDE1-211ENST00000525970 POTECB2RU33 542 aa9.63□□□□□ -0.87
CSDE1-211ENST00000525970 SMCPP49901 116 aaPredicted RBP9.63□□□□□ -0.87
CSDE1-211ENST00000525970 TTC24A2A3L6 582 aaPredicted RBP9.62□□□□□ -0.87
CSDE1-211ENST00000525970 AXIN1O15169 862 aa9.61□□□□□ -0.87
CSDE1-211ENST00000525970 KRI1Q8N9T8 703 aaKnown RBP9.61□□□□□ -0.87
CSDE1-211ENST00000525970 SNIP1Q8TAD8 396 aaKnown RBP9.61□□□□□ -0.87
CSDE1-211ENST00000525970 REPIN1Q9BWE0 567 aaKnown RBP9.61□□□□□ -0.87
CSDE1-211ENST00000525970 NUTM1Q86Y26 1132 aa9.6□□□□□ -0.87
CSDE1-211ENST00000525970 HLA-CQ95604 372 aa9.6□□□□□ -0.87
CSDE1-211ENST00000525970 JUNDP17535 347 aa9.58□□□□□ -0.88
CSDE1-211ENST00000525970 RETREG3Q86VR2 466 aa9.58□□□□□ -0.88
CSDE1-211ENST00000525970 WNT7BP56706 349 aa9.57□□□□□ -0.88
CSDE1-211ENST00000525970 SMPD1P17405 629 aa9.56□□□□□ -0.88
CSDE1-211ENST00000525970 GUCA2AQ02747 115 aa9.56□□□□□ -0.88
CSDE1-211ENST00000525970 CCDC24Q8N4L8 307 aa9.56□□□□□ -0.88
CSDE1-211ENST00000525970 MRGPRX2Q96LB1 330 aa9.56□□□□□ -0.88
CSDE1-211ENST00000525970 DACH1Q9UI36 760 aa9.55□□□□□ -0.88
CSDE1-211ENST00000525970 FDX1P10109 184 aa9.54□□□□□ -0.88
CSDE1-211ENST00000525970 BARGINQ6ZT62 677 aa9.54□□□□□ -0.88
CSDE1-211ENST00000525970 SSTR3P32745 418 aaPredicted RBP9.53□□□□□ -0.88
CSDE1-211ENST00000525970 RC3H1Q5TC82 1133 aaKnown RBP9.53□□□□□ -0.88
CSDE1-211ENST00000525970 ZC3H15Q8WU90 426 aaKnown RBP9.53□□□□□ -0.88
CSDE1-211ENST00000525970 GMPR2Q9P2T1 348 aaKnown RBP9.53□□□□□ -0.88
CSDE1-211ENST00000525970 ZMYND10O75800 440 aa9.52□□□□□ -0.89
CSDE1-211ENST00000525970 SKOR1P84550 965 aa9.52□□□□□ -0.89
CSDE1-211ENST00000525970 AMHR2Q16671 573 aa9.52□□□□□ -0.89
CSDE1-211ENST00000525970 SYMPKQ92797 1274 aaKnown RBP9.52□□□□□ -0.89
CSDE1-211ENST00000525970 NUDT12Q9BQG2 462 aa9.52□□□□□ -0.89
CSDE1-211ENST00000525970 C11orf95C9JLR9 678 aaPredicted RBP9.51□□□□□ -0.89
CSDE1-211ENST00000525970 J3QL48 77 aa9.51□□□□□ -0.89
CSDE1-211ENST00000525970 TREML4Q6UXN2 200 aa9.51□□□□□ -0.89
CSDE1-211ENST00000525970 SPIRE2Q8WWL2 714 aa9.5□□□□□ -0.89
CSDE1-211ENST00000525970 PCDHGC3Q9UN70 934 aa9.5□□□□□ -0.89
CSDE1-211ENST00000525970 C6orf229H3BNL8 230 aa9.49□□□□□ -0.89
CSDE1-211ENST00000525970 MS4A1P11836 297 aa9.49□□□□□ -0.89
CSDE1-211ENST00000525970 TTLL12Q14166 644 aaPredicted RBP9.49□□□□□ -0.89
CSDE1-211ENST00000525970 LCE2AQ5TA79 106 aaPredicted RBP9.48□□□□□ -0.89
CSDE1-211ENST00000525970 ATP13A2Q9NQ11 1180 aa9.48□□□□□ -0.89
CSDE1-211ENST00000525970 SPDYE5A6NIY4 337 aa9.47□□□□□ -0.89
CSDE1-211ENST00000525970 CCNYL3P0C7X3 344 aa9.47□□□□□ -0.89
CSDE1-211ENST00000525970 PTPRNQ16849 979 aa9.47□□□□□ -0.89
CSDE1-211ENST00000525970 SENP2Q9HC62 589 aa9.47□□□□□ -0.89
CSDE1-211ENST00000525970 GJA5P36382 358 aa9.46□□□□□ -0.9
CSDE1-211ENST00000525970 PTCRAQ6ISU1 281 aaPredicted RBP9.46□□□□□ -0.9
CSDE1-211ENST00000525970 GIGYF2Q6Y7W6 1299 aaKnown RBP9.46□□□□□ -0.9
CSDE1-211ENST00000525970 HPS1Q92902 700 aa9.46□□□□□ -0.9
CSDE1-211ENST00000525970 MOXD2PA6NHM9 499 aa9.45□□□□□ -0.9
CSDE1-211ENST00000525970 DIXDC1Q155Q3 683 aa9.45□□□□□ -0.9
CSDE1-211ENST00000525970 DESI1Q6ICB0 168 aa9.45□□□□□ -0.9
CSDE1-211ENST00000525970 SIAH2O43255 324 aa9.44□□□□□ -0.9
CSDE1-211ENST00000525970 EHBP1Q8NDI1 1231 aa9.44□□□□□ -0.9
CSDE1-211ENST00000525970 KIFC2Q96AC6 838 aa9.44□□□□□ -0.9
CSDE1-211ENST00000525970 TRIM47Q96LD4 638 aa9.44□□□□□ -0.9
CSDE1-211ENST00000525970 EVA1BQ9NVM1 165 aa9.44□□□□□ -0.9
CSDE1-211ENST00000525970 WFS1O76024 890 aa9.43□□□□□ -0.9
CSDE1-211ENST00000525970 ALDH1A1P00352 501 aa9.43□□□□□ -0.9
CSDE1-211ENST00000525970 NDUFV2P19404 249 aa9.43□□□□□ -0.9
CSDE1-211ENST00000525970 MTMR2Q13614 643 aa9.43□□□□□ -0.9
CSDE1-211ENST00000525970 PRR7Q8TB68 274 aa9.42□□□□□ -0.9
CSDE1-211ENST00000525970 BEGAINQ9BUH8 593 aa9.42□□□□□ -0.9
CSDE1-211ENST00000525970 SH3BP2P78314 561 aa9.41□□□□□ -0.9
CSDE1-211ENST00000525970 UNC93B1Q9H1C4 597 aa9.41□□□□□ -0.9
CSDE1-211ENST00000525970 KCNH2Q12809 1159 aa9.4□□□□□ -0.9
CSDE1-211ENST00000525970 NFX1Q12986 1120 aaKnown RBP9.4□□□□□ -0.9
CSDE1-211ENST00000525970 SNRPBP14678 240 aaKnown RBP9.39□□□□□ -0.91
CSDE1-211ENST00000525970 PARP9Q8IXQ6 854 aa9.39□□□□□ -0.91
CSDE1-211ENST00000525970 TBC1D2Q9BYX2 928 aa9.39□□□□□ -0.91
CSDE1-211ENST00000525970 WASF2Q9Y6W5 498 aa9.39□□□□□ -0.91
CSDE1-211ENST00000525970 RSBN1LQ6PCB5 846 aaPredicted RBP9.38□□□□□ -0.91
CSDE1-211ENST00000525970 MPNDQ8N594 471 aa9.38□□□□□ -0.91
CSDE1-211ENST00000525970 TIMELESSQ9UNS1 1208 aa9.38□□□□□ -0.91
CSDE1-211ENST00000525970 TRIM66O15016 1216 aa9.37□□□□□ -0.91
CSDE1-211ENST00000525970 SPTLC1O15269 473 aa9.37□□□□□ -0.91
CSDE1-211ENST00000525970 AK7Q96M32 723 aa9.37□□□□□ -0.91
CSDE1-211ENST00000525970 SLC24A3Q9HC58 644 aa9.37□□□□□ -0.91
CSDE1-211ENST00000525970 PLEKHG3A1L390 1219 aa9.36□□□□□ -0.91
CSDE1-211ENST00000525970 WIPF1O43516 503 aa9.36□□□□□ -0.91
CSDE1-211ENST00000525970 VARSP26640 1264 aaKnown RBP9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms