RNA–Protein interactions for RNA: ENST00000524356.1

PCM1-223, Transcript of pericentriolar material 1, human

TSL 2

Gene PCM1, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PCM1-223	ENST00000524356	RDH13	Q8NBN7	331 aa		11.32	□□□□□ -0.6
PCM1-223	ENST00000524356	SALL2	Q9Y467	1007 aa	Predicted RBP	11.32	□□□□□ -0.6
PCM1-223	ENST00000524356	MSS51	Q4VC12	460 aa		11.3	□□□□□ -0.6
PCM1-223	ENST00000524356	RNF19B	Q6ZMZ0	732 aa		11.3	□□□□□ -0.6
PCM1-223	ENST00000524356	KIFC2	Q96AC6	838 aa		11.29	□□□□□ -0.6
PCM1-223	ENST00000524356	DDX11L8	A8MPP1	907 aa		11.27	□□□□□ -0.61
PCM1-223	ENST00000524356	GMPR	P36959	345 aa		11.27	□□□□□ -0.61
PCM1-223	ENST00000524356	DAXX	Q9UER7	740 aa	Predicted RBP	11.27	□□□□□ -0.61
PCM1-223	ENST00000524356	FAM181B	A6NEQ2	426 aa		11.26	□□□□□ -0.61
PCM1-223	ENST00000524356	FECH	P22830	423 aa		11.26	□□□□□ -0.61
PCM1-223	ENST00000524356	GCGR	P47871	477 aa		11.26	□□□□□ -0.61
PCM1-223	ENST00000524356	NLRP7	Q8WX94	980 aa		11.25	□□□□□ -0.61
PCM1-223	ENST00000524356	ZSCAN1	Q8NBB4	408 aa		11.24	□□□□□ -0.61
PCM1-223	ENST00000524356	SLC16A10	Q8TF71	515 aa		11.24	□□□□□ -0.61
PCM1-223	ENST00000524356	NXF1	Q9UBU9	619 aa	Known RBP	11.23	□□□□□ -0.61
PCM1-223	ENST00000524356	MMP16	P51512	607 aa		11.22	□□□□□ -0.61
PCM1-223	ENST00000524356	HIC1	Q14526	733 aa		11.22	□□□□□ -0.61
PCM1-223	ENST00000524356	REPIN1	Q9BWE0	567 aa	Known RBP	11.21	□□□□□ -0.61
PCM1-223	ENST00000524356	VEGFB	P49765	207 aa		11.18	□□□□□ -0.62
PCM1-223	ENST00000524356	SKOR1	P84550	965 aa		11.18	□□□□□ -0.62
PCM1-223	ENST00000524356	SEMA3E	O15041	775 aa		11.17	□□□□□ -0.62
PCM1-223	ENST00000524356	RC3H1	Q5TC82	1133 aa	Known RBP	11.17	□□□□□ -0.62
PCM1-223	ENST00000524356	IRF7	Q92985	503 aa		11.17	□□□□□ -0.62
PCM1-223	ENST00000524356	ERBB4	Q15303	1308 aa		11.16	□□□□□ -0.62
PCM1-223	ENST00000524356	BMP1	P13497	986 aa		11.16	□□□□□ -0.62
PCM1-223	ENST00000524356	TRIM46	Q7Z4K8	759 aa		11.16	□□□□□ -0.62
PCM1-223	ENST00000524356	DXO	O77932	396 aa	Known RBP	11.15	□□□□□ -0.62
PCM1-223	ENST00000524356	SULF1	Q8IWU6	871 aa		11.15	□□□□□ -0.62
PCM1-223	ENST00000524356	NPAS3	Q8IXF0	933 aa		11.15	□□□□□ -0.62
PCM1-223	ENST00000524356	PHOX2B	Q99453	314 aa		11.15	□□□□□ -0.62
PCM1-223	ENST00000524356		H3BM21	787 aa		11.14	□□□□□ -0.63
PCM1-223	ENST00000524356	SUZ12	Q15022	739 aa	Known RBP	11.13	□□□□□ -0.63
PCM1-223	ENST00000524356	GNPAT	O15228	680 aa		11.12	□□□□□ -0.63
PCM1-223	ENST00000524356	GPR37	O15354	613 aa		11.12	□□□□□ -0.63
PCM1-223	ENST00000524356	ALDH1A1	P00352	501 aa		11.12	□□□□□ -0.63
PCM1-223	ENST00000524356	WNT7B	P56706	349 aa		11.12	□□□□□ -0.63
PCM1-223	ENST00000524356		Q3C1V9	767 aa		11.12	□□□□□ -0.63
PCM1-223	ENST00000524356	GRIPAP1	Q4V328	841 aa		11.11	□□□□□ -0.63
PCM1-223	ENST00000524356	RBM26	Q5T8P6	1007 aa	Known RBP	11.11	□□□□□ -0.63
PCM1-223	ENST00000524356	USB1	Q9BQ65	265 aa	Known RBP	11.1	□□□□□ -0.63
PCM1-223	ENST00000524356	CCDC24	Q8N4L8	307 aa		11.09	□□□□□ -0.63
PCM1-223	ENST00000524356	TSHZ2	Q9NRE2	1034 aa		11.08	□□□□□ -0.64
PCM1-223	ENST00000524356	CAPN5	O15484	640 aa	Predicted RBP	11.06	□□□□□ -0.64
PCM1-223	ENST00000524356	SIAH2	O43255	324 aa		11.06	□□□□□ -0.64
PCM1-223	ENST00000524356	HLA-C	Q95604	372 aa		11.05	□□□□□ -0.64
PCM1-223	ENST00000524356	CD46	P15529	392 aa		11.01	□□□□□ -0.65
PCM1-223	ENST00000524356	ZFP42	Q96MM3	310 aa		11.01	□□□□□ -0.65
PCM1-223	ENST00000524356	KDM4A	O75164	1064 aa		10.99	□□□□□ -0.65
PCM1-223	ENST00000524356	GSK3A	P49840	483 aa		10.99	□□□□□ -0.65
PCM1-223	ENST00000524356	P3H3	Q8IVL6	736 aa		10.99	□□□□□ -0.65
PCM1-223	ENST00000524356	EHBP1	Q8NDI1	1231 aa		10.99	□□□□□ -0.65
PCM1-223	ENST00000524356	WASF2	Q9Y6W5	498 aa		10.99	□□□□□ -0.65
PCM1-223	ENST00000524356	TESPA1	A2RU30	521 aa	Predicted RBP	10.98	□□□□□ -0.65
PCM1-223	ENST00000524356	PTCRA	Q6ISU1	281 aa	Predicted RBP	10.98	□□□□□ -0.65
PCM1-223	ENST00000524356	VSIG8	P0DPA2	414 aa		10.96	□□□□□ -0.65
PCM1-223	ENST00000524356	JUND	P17535	347 aa		10.96	□□□□□ -0.65
PCM1-223	ENST00000524356	KCTD17	Q8N5Z5	321 aa		10.96	□□□□□ -0.65
PCM1-223	ENST00000524356	KCNMA1	Q12791	1236 aa		10.94	□□□□□ -0.66
PCM1-223	ENST00000524356	GUCA2A	Q02747	115 aa		10.93	□□□□□ -0.66
PCM1-223	ENST00000524356	SOBP	A7XYQ1	873 aa		10.92	□□□□□ -0.66
PCM1-223	ENST00000524356	HOXA2	O43364	376 aa		10.92	□□□□□ -0.66
PCM1-223	ENST00000524356	SH3BP2	P78314	561 aa		10.92	□□□□□ -0.66
PCM1-223	ENST00000524356	SYMPK	Q92797	1274 aa	Known RBP	10.92	□□□□□ -0.66
PCM1-223	ENST00000524356	NUDT12	Q9BQG2	462 aa		10.91	□□□□□ -0.66
PCM1-223	ENST00000524356	TLL2	Q9Y6L7	1015 aa		10.91	□□□□□ -0.66
PCM1-223	ENST00000524356	USP46	P62068	366 aa		10.9	□□□□□ -0.66
PCM1-223	ENST00000524356	MRPL14	Q6P1L8	145 aa	Known RBP	10.9	□□□□□ -0.66
PCM1-223	ENST00000524356	PURB	Q96QR8	312 aa	Known RBP	10.89	□□□□□ -0.67
PCM1-223	ENST00000524356	SMYD5	Q6GMV2	418 aa		10.87	□□□□□ -0.67
PCM1-223	ENST00000524356	NNT	Q13423	1086 aa		10.86	□□□□□ -0.67
PCM1-223	ENST00000524356	TIMP2	P16035	220 aa		10.84	□□□□□ -0.67
PCM1-223	ENST00000524356	RETREG3	Q86VR2	466 aa		10.84	□□□□□ -0.67
PCM1-223	ENST00000524356	SCARF1	Q14162	830 aa		10.83	□□□□□ -0.68
PCM1-223	ENST00000524356	LINC01559	Q495D7	138 aa		10.82	□□□□□ -0.68
PCM1-223	ENST00000524356	TMEM151A	Q8N4L1	468 aa		10.82	□□□□□ -0.68
PCM1-223	ENST00000524356	CCNYL3	P0C7X3	344 aa		10.81	□□□□□ -0.68
PCM1-223	ENST00000524356	KLF16	Q9BXK1	252 aa	Predicted RBP	10.81	□□□□□ -0.68
PCM1-223	ENST00000524356	UNC93B1	Q9H1C4	597 aa		10.81	□□□□□ -0.68
PCM1-223	ENST00000524356	ADH1C	P00326	375 aa		10.8	□□□□□ -0.68
PCM1-223	ENST00000524356	WDR4	P57081	412 aa	Known RBP	10.8	□□□□□ -0.68
PCM1-223	ENST00000524356	MDM2	Q00987	491 aa	Predicted RBP	10.8	□□□□□ -0.68
PCM1-223	ENST00000524356	RASSF7	Q02833	373 aa		10.8	□□□□□ -0.68
PCM1-223	ENST00000524356	GPIHBP1	Q8IV16	184 aa		10.8	□□□□□ -0.68
PCM1-223	ENST00000524356	GDF11	O95390	407 aa		10.79	□□□□□ -0.68
PCM1-223	ENST00000524356	MPND	Q8N594	471 aa		10.79	□□□□□ -0.68
PCM1-223	ENST00000524356	BAP1	Q92560	729 aa		10.79	□□□□□ -0.68
PCM1-223	ENST00000524356	PPFIA3	O75145	1194 aa		10.78	□□□□□ -0.68
PCM1-223	ENST00000524356	MS4A1	P11836	297 aa		10.78	□□□□□ -0.68
PCM1-223	ENST00000524356	PLEKHG3	A1L390	1219 aa		10.77	□□□□□ -0.69
PCM1-223	ENST00000524356	VARS	P26640	1264 aa	Known RBP	10.76	□□□□□ -0.69
PCM1-223	ENST00000524356	KRT76	Q01546	638 aa		10.76	□□□□□ -0.69
PCM1-223	ENST00000524356	ZNF511	Q8NB15	262 aa		10.76	□□□□□ -0.69
PCM1-223	ENST00000524356	EVA1B	Q9NVM1	165 aa		10.76	□□□□□ -0.69
PCM1-223	ENST00000524356	PCDHGC3	Q9UN70	934 aa		10.76	□□□□□ -0.69
PCM1-223	ENST00000524356	MAN1A2	O60476	641 aa		10.75	□□□□□ -0.69
PCM1-223	ENST00000524356	MAP2K5	Q13163	448 aa		10.75	□□□□□ -0.69
PCM1-223	ENST00000524356	PTPRN	Q16849	979 aa		10.75	□□□□□ -0.69
PCM1-223	ENST00000524356	AMER1	Q5JTC6	1135 aa	Predicted RBP	10.75	□□□□□ -0.69
PCM1-223	ENST00000524356	RTN4	Q9NQC3	1192 aa	Known RBP	10.74	□□□□□ -0.69
PCM1-223	ENST00000524356	ZFAND3	Q9H8U3	227 aa		10.73	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 63 ms