RNA–Protein interactions for RNA: ENST00000523483.5

SDCBP-212, Transcript of syndecan binding protein, humanhuman

TSL 2 BASIC

Gene SDCBP, Length 3,589 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-212ENST00000523483 SLC24A1O60721 1099 aa12.84□□□□□ -0.35
SDCBP-212ENST00000523483 CC2D1BQ5T0F9 858 aaKnown RBP12.82□□□□□ -0.36
SDCBP-212ENST00000523483 ZNF335Q9H4Z2 1342 aaPredicted RBP12.82□□□□□ -0.36
SDCBP-212ENST00000523483 WASLO00401 505 aaPredicted RBP12.81□□□□□ -0.36
SDCBP-212ENST00000523483 QRICH2Q9H0J4 1663 aa12.81□□□□□ -0.36
SDCBP-212ENST00000523483 CABP1Q9NZU7 370 aa12.81□□□□□ -0.36
SDCBP-212ENST00000523483 MED14O60244 1454 aa12.81□□□□□ -0.36
SDCBP-212ENST00000523483 ARHGEF28Q8N1W1 1705 aaKnown RBP12.81□□□□□ -0.36
SDCBP-212ENST00000523483 KNSTRNQ9Y448 316 aa12.8□□□□□ -0.36
SDCBP-212ENST00000523483 PLEKHG5O94827 1062 aa12.8□□□□□ -0.36
SDCBP-212ENST00000523483 PMFBP1Q8TBY8 1022 aa12.8□□□□□ -0.36
SDCBP-212ENST00000523483 NUDT16Q96DE0 195 aaKnown RBP12.79□□□□□ -0.36
SDCBP-212ENST00000523483 SETD1AO15047 1707 aaKnown RBP12.79□□□□□ -0.36
SDCBP-212ENST00000523483 SBNO2Q9Y2G9 1366 aa12.78□□□□□ -0.36
SDCBP-212ENST00000523483 POLR1AO95602 1720 aaPredicted RBP12.78□□□□□ -0.36
SDCBP-212ENST00000523483 PIK3R4Q99570 1358 aa12.78□□□□□ -0.36
SDCBP-212ENST00000523483 TNNT2P45379 298 aaPredicted RBP12.78□□□□□ -0.36
SDCBP-212ENST00000523483 YTHDC1Q96MU7 727 aaKnown RBP12.78□□□□□ -0.36
SDCBP-212ENST00000523483 DMRT2Q9Y5R5 561 aa12.77□□□□□ -0.36
SDCBP-212ENST00000523483 FAM135BQ49AJ0 1406 aa12.77□□□□□ -0.37
SDCBP-212ENST00000523483 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.77□□□□□ -0.37
SDCBP-212ENST00000523483 TULP4Q9NRJ4 1543 aa12.77□□□□□ -0.37
SDCBP-212ENST00000523483 DIP2AQ14689 1571 aa12.76□□□□□ -0.37
SDCBP-212ENST00000523483 TECPR2O15040 1411 aa12.76□□□□□ -0.37
SDCBP-212ENST00000523483 TMEM94Q12767 1356 aa12.76□□□□□ -0.37
SDCBP-212ENST00000523483 NGDNQ8NEJ9 315 aaKnown RBP12.75□□□□□ -0.37
SDCBP-212ENST00000523483 SIRT1Q96EB6 747 aa12.75□□□□□ -0.37
SDCBP-212ENST00000523483 CCDC61Q9Y6R9 512 aa12.75□□□□□ -0.37
SDCBP-212ENST00000523483 HDGFL2Q7Z4V5 671 aaPredicted RBP12.75□□□□□ -0.37
SDCBP-212ENST00000523483 DLC1Q96QB1 1528 aa12.75□□□□□ -0.37
SDCBP-212ENST00000523483 ATF3P18847 181 aa12.75□□□□□ -0.37
SDCBP-212ENST00000523483 ESCO1Q5FWF5 840 aa12.75□□□□□ -0.37
SDCBP-212ENST00000523483 TERF2IPQ9NYB0 399 aa12.75□□□□□ -0.37
SDCBP-212ENST00000523483 ATAD2Q6PL18 1390 aa12.75□□□□□ -0.37
SDCBP-212ENST00000523483 PTCH1Q13635 1447 aa12.74□□□□□ -0.37
SDCBP-212ENST00000523483 PRR36Q9H6K5 1346 aa12.74□□□□□ -0.37
SDCBP-212ENST00000523483 CPS1P31327 1500 aa12.73□□□□□ -0.37
SDCBP-212ENST00000523483 CARD14Q9BXL6 1004 aa12.73□□□□□ -0.37
SDCBP-212ENST00000523483 XPCQ01831 940 aaPredicted RBP12.73□□□□□ -0.37
SDCBP-212ENST00000523483 PPIP5K1Q6PFW1 1433 aa12.72□□□□□ -0.37
SDCBP-212ENST00000523483 SOX12O15370 315 aa12.72□□□□□ -0.37
SDCBP-212ENST00000523483 PAK3O75914 559 aaPredicted RBP12.72□□□□□ -0.37
SDCBP-212ENST00000523483 PRKRIP1Q9H875 184 aaPredicted RBP12.72□□□□□ -0.37
SDCBP-212ENST00000523483 LMOD2Q6P5Q4 547 aa12.72□□□□□ -0.37
SDCBP-212ENST00000523483 C19orf44Q9H6X5 657 aa12.71□□□□□ -0.37
SDCBP-212ENST00000523483 NSD3Q9BZ95 1437 aa12.71□□□□□ -0.37
SDCBP-212ENST00000523483 STRCQ7RTU9 1775 aa12.71□□□□□ -0.37
SDCBP-212ENST00000523483 GGNBP2Q9H3C7 697 aa12.71□□□□□ -0.38
SDCBP-212ENST00000523483 A0A1W2PP64 1363 aa12.71□□□□□ -0.38
SDCBP-212ENST00000523483 ORAI2Q96SN7 254 aa12.7□□□□□ -0.38
SDCBP-212ENST00000523483 PER1O15534 1290 aaPredicted RBP12.7□□□□□ -0.38
SDCBP-212ENST00000523483 KTN1Q86UP2 1357 aaKnown RBP12.7□□□□□ -0.38
SDCBP-212ENST00000523483 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.7□□□□□ -0.38
SDCBP-212ENST00000523483 ACEP12821 1306 aa12.7□□□□□ -0.38
SDCBP-212ENST00000523483 FOXO3O43524 673 aa12.69□□□□□ -0.38
SDCBP-212ENST00000523483 CHD2O14647 1828 aaKnown RBP12.69□□□□□ -0.38
SDCBP-212ENST00000523483 NUTM2GQ5VZR2 741 aa12.69□□□□□ -0.38
SDCBP-212ENST00000523483 SCAF1Q9H7N4 1312 aaKnown RBP12.69□□□□□ -0.38
SDCBP-212ENST00000523483 XRN1Q8IZH2 1706 aaKnown RBP12.69□□□□□ -0.38
SDCBP-212ENST00000523483 MSH6P52701 1360 aa12.69□□□□□ -0.38
SDCBP-212ENST00000523483 MRS2Q9HD23 443 aa12.69□□□□□ -0.38
SDCBP-212ENST00000523483 KNDC1Q76NI1 1749 aa12.68□□□□□ -0.38
SDCBP-212ENST00000523483 MORC1Q86VD1 984 aa12.68□□□□□ -0.38
SDCBP-212ENST00000523483 ADGRL3Q9HAR2 1447 aa12.68□□□□□ -0.38
SDCBP-212ENST00000523483 CGNL1Q0VF96 1302 aa12.68□□□□□ -0.38
SDCBP-212ENST00000523483 ANKRD36BQ8N2N9 1353 aa12.67□□□□□ -0.38
SDCBP-212ENST00000523483 SENP3-EIF4A1A0A087X0R7 540 aa12.67□□□□□ -0.38
SDCBP-212ENST00000523483 PSME1Q06323 249 aa12.67□□□□□ -0.38
SDCBP-212ENST00000523483 DDX17Q92841 729 aaKnown RBP12.67□□□□□ -0.38
SDCBP-212ENST00000523483 PHF8Q9UPP1 1060 aa12.67□□□□□ -0.38
SDCBP-212ENST00000523483 PPM1GO15355 546 aaPredicted RBP12.66□□□□□ -0.38
SDCBP-212ENST00000523483 CCDC184Q52MB2 194 aa12.66□□□□□ -0.38
SDCBP-212ENST00000523483 CADPS2Q86UW7 1296 aa12.66□□□□□ -0.38
SDCBP-212ENST00000523483 PUS7Q96PZ0 661 aaKnown RBP12.66□□□□□ -0.38
SDCBP-212ENST00000523483 AMER1Q5JTC6 1135 aaPredicted RBP12.66□□□□□ -0.38
SDCBP-212ENST00000523483 FAM9BQ8IZU0 186 aa12.66□□□□□ -0.38
SDCBP-212ENST00000523483 ATP7BP35670 1465 aa12.66□□□□□ -0.38
SDCBP-212ENST00000523483 NME9Q86XW9 330 aa12.66□□□□□ -0.38
SDCBP-212ENST00000523483 ZRANB1Q9UGI0 708 aa12.65□□□□□ -0.38
SDCBP-212ENST00000523483 NKTRP30414 1462 aaKnown RBP12.65□□□□□ -0.38
SDCBP-212ENST00000523483 FBLN1P23142 703 aa12.65□□□□□ -0.38
SDCBP-212ENST00000523483 NINLQ9Y2I6 1382 aa12.64□□□□□ -0.39
SDCBP-212ENST00000523483 ZBTB7CA1YPR0 619 aa12.64□□□□□ -0.39
SDCBP-212ENST00000523483 MYOM1P52179 1685 aa12.63□□□□□ -0.39
SDCBP-212ENST00000523483 RALBP1Q15311 655 aa12.63□□□□□ -0.39
SDCBP-212ENST00000523483 FYB1O15117 783 aa12.63□□□□□ -0.39
SDCBP-212ENST00000523483 PIP4K2BP78356 416 aa12.63□□□□□ -0.39
SDCBP-212ENST00000523483 ZNF692Q9BU19 519 aaPredicted RBP12.63□□□□□ -0.39
SDCBP-212ENST00000523483 NALCNQ8IZF0 1738 aa12.62□□□□□ -0.39
SDCBP-212ENST00000523483 STRCP1A6NGW2 1772 aa12.62□□□□□ -0.39
SDCBP-212ENST00000523483 ABTB2Q8N961 1025 aa12.62□□□□□ -0.39
SDCBP-212ENST00000523483 PLEKHG3A1L390 1219 aa12.61□□□□□ -0.39
SDCBP-212ENST00000523483 LRRC7Q96NW7 1537 aa12.61□□□□□ -0.39
SDCBP-212ENST00000523483 SLAIN2Q9P270 581 aa12.61□□□□□ -0.39
SDCBP-212ENST00000523483 MYBBP1AQ9BQG0 1328 aaKnown RBP12.61□□□□□ -0.39
SDCBP-212ENST00000523483 NLRP6P59044 892 aa12.61□□□□□ -0.39
SDCBP-212ENST00000523483 COG3Q96JB2 828 aa12.61□□□□□ -0.39
SDCBP-212ENST00000523483 NWD1Q149M9 1564 aa12.61□□□□□ -0.39
SDCBP-212ENST00000523483 TTC21BQ7Z4L5 1316 aa12.6□□□□□ -0.39
SDCBP-212ENST00000523483 CD163L1Q9NR16 1453 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms