RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 TOR4AQ9NXH8 423 aa8.22□□□□□ -1.09
NUP54-208ENST00000508604 POTECB2RU33 542 aa8.21□□□□□ -1.09
NUP54-208ENST00000508604 AXIN1O15169 862 aa8.21□□□□□ -1.09
NUP54-208ENST00000508604 CRIPAKQ8N1N5 446 aa8.21□□□□□ -1.09
NUP54-208ENST00000508604 MINK1Q8N4C8 1332 aaPredicted RBP8.21□□□□□ -1.09
NUP54-208ENST00000508604 IRF6O14896 467 aa8.21□□□□□ -1.1
NUP54-208ENST00000508604 MDM2Q00987 491 aaPredicted RBP8.21□□□□□ -1.1
NUP54-208ENST00000508604 USB1Q9BQ65 265 aaKnown RBP8.21□□□□□ -1.1
NUP54-208ENST00000508604 AVPP01185 164 aa8.2□□□□□ -1.1
NUP54-208ENST00000508604 KRI1Q8N9T8 703 aaKnown RBP8.2□□□□□ -1.1
NUP54-208ENST00000508604 KDM2AQ9Y2K7 1162 aa8.2□□□□□ -1.1
NUP54-208ENST00000508604 MMP16P51512 607 aa8.19□□□□□ -1.1
NUP54-208ENST00000508604 TRIM32Q13049 653 aa8.19□□□□□ -1.1
NUP54-208ENST00000508604 WNT7AO00755 349 aa8.18□□□□□ -1.1
NUP54-208ENST00000508604 VSIG10Q8N0Z9 540 aa8.18□□□□□ -1.1
NUP54-208ENST00000508604 CCDC24Q8N4L8 307 aa8.18□□□□□ -1.1
NUP54-208ENST00000508604 SNIP1Q8TAD8 396 aaKnown RBP8.18□□□□□ -1.1
NUP54-208ENST00000508604 REPIN1Q9BWE0 567 aaKnown RBP8.18□□□□□ -1.1
NUP54-208ENST00000508604 CLCN1P35523 988 aa8.17□□□□□ -1.1
NUP54-208ENST00000508604 C11orf95C9JLR9 678 aaPredicted RBP8.16□□□□□ -1.1
NUP54-208ENST00000508604 SMCPP49901 116 aaPredicted RBP8.16□□□□□ -1.1
NUP54-208ENST00000508604 NUTM1Q86Y26 1132 aa8.16□□□□□ -1.1
NUP54-208ENST00000508604 GPCPD1Q9NPB8 672 aa8.16□□□□□ -1.1
NUP54-208ENST00000508604 DXOO77932 396 aaKnown RBP8.15□□□□□ -1.1
NUP54-208ENST00000508604 HOXA2O43364 376 aa8.14□□□□□ -1.11
NUP54-208ENST00000508604 CCDC102AQ96A19 550 aa8.14□□□□□ -1.11
NUP54-208ENST00000508604 TREML4Q6UXN2 200 aa8.14□□□□□ -1.11
NUP54-208ENST00000508604 MRGPRX2Q96LB1 330 aa8.14□□□□□ -1.11
NUP54-208ENST00000508604 GMPR2Q9P2T1 348 aaKnown RBP8.14□□□□□ -1.11
NUP54-208ENST00000508604 DACH1Q9UI36 760 aa8.13□□□□□ -1.11
NUP54-208ENST00000508604 WNT7BP56706 349 aa8.11□□□□□ -1.11
NUP54-208ENST00000508604 SMPD1P17405 629 aa8.11□□□□□ -1.11
NUP54-208ENST00000508604 JUNDP17535 347 aa8.11□□□□□ -1.11
NUP54-208ENST00000508604 HLA-CQ95604 372 aa8.11□□□□□ -1.11
NUP54-208ENST00000508604 FAM217BQ9NTX9 383 aaPredicted RBP8.11□□□□□ -1.11
NUP54-208ENST00000508604 RC3H1Q5TC82 1133 aaKnown RBP8.1□□□□□ -1.11
NUP54-208ENST00000508604 SENP2Q9HC62 589 aa8.1□□□□□ -1.11
NUP54-208ENST00000508604 RETREG3Q86VR2 466 aa8.09□□□□□ -1.11
NUP54-208ENST00000508604 J3QL48 77 aa8.08□□□□□ -1.12
NUP54-208ENST00000508604 WFS1O76024 890 aa8.08□□□□□ -1.12
NUP54-208ENST00000508604 GUCA2AQ02747 115 aa8.08□□□□□ -1.12
NUP54-208ENST00000508604 ATP13A2Q9NQ11 1180 aa8.08□□□□□ -1.12
NUP54-208ENST00000508604 NUDT12Q9BQG2 462 aa8.08□□□□□ -1.12
NUP54-208ENST00000508604 C6orf229H3BNL8 230 aa8.07□□□□□ -1.12
NUP54-208ENST00000508604 FDX1P10109 184 aa8.07□□□□□ -1.12
NUP54-208ENST00000508604 KIFC2Q96AC6 838 aa8.07□□□□□ -1.12
NUP54-208ENST00000508604 SYMPKQ92797 1274 aaKnown RBP8.06□□□□□ -1.12
NUP54-208ENST00000508604 ALDH1A1P00352 501 aa8.05□□□□□ -1.12
NUP54-208ENST00000508604 EHBP1Q8NDI1 1231 aa8.05□□□□□ -1.12
NUP54-208ENST00000508604 SSTR3P32745 418 aaPredicted RBP8.05□□□□□ -1.12
NUP54-208ENST00000508604 SKOR1P84550 965 aa8.05□□□□□ -1.12
NUP54-208ENST00000508604 TTLL12Q14166 644 aaPredicted RBP8.05□□□□□ -1.12
NUP54-208ENST00000508604 HPS1Q92902 700 aa8.05□□□□□ -1.12
NUP54-208ENST00000508604 MS4A1P11836 297 aa8.04□□□□□ -1.12
NUP54-208ENST00000508604 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.04□□□□□ -1.12
NUP54-208ENST00000508604 WASF2Q9Y6W5 498 aa8.04□□□□□ -1.12
NUP54-208ENST00000508604 TRIM47Q96LD4 638 aa8.03□□□□□ -1.12
NUP54-208ENST00000508604 CCNYL3P0C7X3 344 aa8.02□□□□□ -1.13
NUP54-208ENST00000508604 LCE2AQ5TA79 106 aaPredicted RBP8.02□□□□□ -1.13
NUP54-208ENST00000508604 SPIRE2Q8WWL2 714 aa8.01□□□□□ -1.13
NUP54-208ENST00000508604 SPDYE5A6NIY4 337 aa8□□□□□ -1.13
NUP54-208ENST00000508604 SNRPBP14678 240 aaKnown RBP8□□□□□ -1.13
NUP54-208ENST00000508604 INSM1Q01101 510 aaPredicted RBP8□□□□□ -1.13
NUP54-208ENST00000508604 NFX1Q12986 1120 aaKnown RBP8□□□□□ -1.13
NUP54-208ENST00000508604 PTPRNQ16849 979 aa8□□□□□ -1.13
NUP54-208ENST00000508604 DIXDC1Q155Q3 683 aa7.99□□□□□ -1.13
NUP54-208ENST00000508604 PTCRAQ6ISU1 281 aaPredicted RBP7.99□□□□□ -1.13
NUP54-208ENST00000508604 PCDHGC3Q9UN70 934 aa7.99□□□□□ -1.13
NUP54-208ENST00000508604 TERTO14746 1132 aaKnown RBP7.98□□□□□ -1.13
NUP54-208ENST00000508604 MTMR2Q13614 643 aa7.98□□□□□ -1.13
NUP54-208ENST00000508604 CAPN5O15484 640 aaPredicted RBP7.98□□□□□ -1.13
NUP54-208ENST00000508604 BARGINQ6ZT62 677 aa7.98□□□□□ -1.13
NUP54-208ENST00000508604 SLC16A10Q8TF71 515 aa7.98□□□□□ -1.13
NUP54-208ENST00000508604 UNC93B1Q9H1C4 597 aa7.98□□□□□ -1.13
NUP54-208ENST00000508604 EVA1BQ9NVM1 165 aa7.98□□□□□ -1.13
NUP54-208ENST00000508604 PLEKHG3A1L390 1219 aa7.97□□□□□ -1.13
NUP54-208ENST00000508604 SIAH2O43255 324 aa7.97□□□□□ -1.13
NUP54-208ENST00000508604 NDUFV2P19404 249 aa7.97□□□□□ -1.13
NUP54-208ENST00000508604 SH3BP2P78314 561 aa7.97□□□□□ -1.13
NUP54-208ENST00000508604 PRR7Q8TB68 274 aa7.97□□□□□ -1.13
NUP54-208ENST00000508604 MOXD2PA6NHM9 499 aa7.96□□□□□ -1.13
NUP54-208ENST00000508604 WIPF1O43516 503 aa7.96□□□□□ -1.13
NUP54-208ENST00000508604 KCNH2Q12809 1159 aa7.96□□□□□ -1.13
NUP54-208ENST00000508604 AMHR2Q16671 573 aa7.96□□□□□ -1.13
NUP54-208ENST00000508604 STK17AQ9UEE5 414 aa7.96□□□□□ -1.13
NUP54-208ENST00000508604 DESI1Q6ICB0 168 aa7.95□□□□□ -1.14
NUP54-208ENST00000508604 GIGYF2Q6Y7W6 1299 aaKnown RBP7.95□□□□□ -1.14
NUP54-208ENST00000508604 ZMYND10O75800 440 aa7.95□□□□□ -1.14
NUP54-208ENST00000508604 VARSP26640 1264 aaKnown RBP7.95□□□□□ -1.14
NUP54-208ENST00000508604 LINC01559Q495D7 138 aa7.95□□□□□ -1.14
NUP54-208ENST00000508604 BAP1Q92560 729 aa7.95□□□□□ -1.14
NUP54-208ENST00000508604 BEGAINQ9BUH8 593 aa7.95□□□□□ -1.14
NUP54-208ENST00000508604 CTHP32929 405 aa7.94□□□□□ -1.14
NUP54-208ENST00000508604 GJA5P36382 358 aa7.93□□□□□ -1.14
NUP54-208ENST00000508604 ZNF511Q8NB15 262 aa7.92□□□□□ -1.14
NUP54-208ENST00000508604 ZC3H15Q8WU90 426 aaKnown RBP7.92□□□□□ -1.14
NUP54-208ENST00000508604 NXF1Q9UBU9 619 aaKnown RBP7.92□□□□□ -1.14
NUP54-208ENST00000508604 BMP1P13497 986 aa7.91□□□□□ -1.14
NUP54-208ENST00000508604 TBC1D2Q9BYX2 928 aa7.91□□□□□ -1.14
NUP54-208ENST00000508604 MPNDQ8N594 471 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms