RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 TSPYL2Q9H2G4 693 aaPredicted RBP11.97□□□□□ -0.49
SCN1A-207ENST00000507401 XIRP1Q702N8 1843 aaKnown RBP11.97□□□□□ -0.49
SCN1A-207ENST00000507401 SPHKAPQ2M3C7 1700 aa11.97□□□□□ -0.49
SCN1A-207ENST00000507401 NKTRP30414 1462 aaKnown RBP11.96□□□□□ -0.49
SCN1A-207ENST00000507401 CHD2O14647 1828 aaKnown RBP11.96□□□□□ -0.49
SCN1A-207ENST00000507401 NWD1Q149M9 1564 aa11.96□□□□□ -0.5
SCN1A-207ENST00000507401 ADAMTS13Q76LX8 1427 aa11.95□□□□□ -0.5
SCN1A-207ENST00000507401 NCOA3Q9Y6Q9 1424 aa11.95□□□□□ -0.5
SCN1A-207ENST00000507401 ZBTB47Q9UFB7 747 aaPredicted RBP11.95□□□□□ -0.5
SCN1A-207ENST00000507401 FAM135BQ49AJ0 1406 aa11.94□□□□□ -0.5
SCN1A-207ENST00000507401 DIP2AQ14689 1571 aa11.94□□□□□ -0.5
SCN1A-207ENST00000507401 ZNF326Q5BKZ1 582 aaKnown RBP11.94□□□□□ -0.5
SCN1A-207ENST00000507401 NUTM2DQ5VT03 806 aaPredicted RBP11.94□□□□□ -0.5
SCN1A-207ENST00000507401 TRPM2O94759 1503 aa11.94□□□□□ -0.5
SCN1A-207ENST00000507401 RPGRIP1LQ68CZ1 1315 aa11.92□□□□□ -0.5
SCN1A-207ENST00000507401 MSH6P52701 1360 aa11.92□□□□□ -0.5
SCN1A-207ENST00000507401 KIF1BO60333 1816 aa11.91□□□□□ -0.5
SCN1A-207ENST00000507401 VGFO15240 615 aaPredicted RBP11.91□□□□□ -0.5
SCN1A-207ENST00000507401 RBM33Q96EV2 1170 aaKnown RBP11.91□□□□□ -0.5
SCN1A-207ENST00000507401 SLAIN2Q9P270 581 aa11.91□□□□□ -0.5
SCN1A-207ENST00000507401 AMOTL2Q9Y2J4 779 aa11.91□□□□□ -0.5
SCN1A-207ENST00000507401 CLTCL1P53675 1640 aa11.9□□□□□ -0.5
SCN1A-207ENST00000507401 MPHOSPH9Q99550 1183 aa11.9□□□□□ -0.5
SCN1A-207ENST00000507401 C19orf44Q9H6X5 657 aa11.9□□□□□ -0.5
SCN1A-207ENST00000507401 SETBP1Q9Y6X0 1596 aa11.89□□□□□ -0.51
SCN1A-207ENST00000507401 KIF12Q96FN5 646 aa11.89□□□□□ -0.51
SCN1A-207ENST00000507401 MS4A3Q96HJ5 214 aa11.89□□□□□ -0.51
SCN1A-207ENST00000507401 PLSCR2Q9NRY7 297 aa11.89□□□□□ -0.51
SCN1A-207ENST00000507401 NEXMIFQ5QGS0 1516 aa11.88□□□□□ -0.51
SCN1A-207ENST00000507401 CADPS2Q86UW7 1296 aa11.88□□□□□ -0.51
SCN1A-207ENST00000507401 ILDR2Q71H61 639 aa11.87□□□□□ -0.51
SCN1A-207ENST00000507401 PTPRUQ92729 1446 aa11.86□□□□□ -0.51
SCN1A-207ENST00000507401 SETD5Q9C0A6 1442 aa11.86□□□□□ -0.51
SCN1A-207ENST00000507401 NRXN3Q9Y4C0 1643 aa11.86□□□□□ -0.51
SCN1A-207ENST00000507401 ATF3P18847 181 aa11.86□□□□□ -0.51
SCN1A-207ENST00000507401 C14orf37Q86TY3 774 aa11.86□□□□□ -0.51
SCN1A-207ENST00000507401 METP08581 1390 aa11.85□□□□□ -0.51
SCN1A-207ENST00000507401 IFNLR1Q8IU57 520 aaPredicted RBP11.84□□□□□ -0.51
SCN1A-207ENST00000507401 CCDC144AA2RUR9 1427 aa11.84□□□□□ -0.51
SCN1A-207ENST00000507401 ROBO1Q9Y6N7 1651 aa11.84□□□□□ -0.51
SCN1A-207ENST00000507401 SOCS7O14512 581 aa11.83□□□□□ -0.52
SCN1A-207ENST00000507401 DCBLD2Q96PD2 775 aa11.83□□□□□ -0.52
SCN1A-207ENST00000507401 MED1Q15648 1581 aaPredicted RBP11.83□□□□□ -0.52
SCN1A-207ENST00000507401 XRN1Q8IZH2 1706 aaKnown RBP11.83□□□□□ -0.52
SCN1A-207ENST00000507401 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.83□□□□□ -0.52
SCN1A-207ENST00000507401 MAP3K13O43283 966 aa11.82□□□□□ -0.52
SCN1A-207ENST00000507401 DCCP43146 1447 aa11.82□□□□□ -0.52
SCN1A-207ENST00000507401 ANKRD30BQ9BXX2 1392 aa11.81□□□□□ -0.52
SCN1A-207ENST00000507401 SPATA31E1Q6ZUB1 1445 aa11.81□□□□□ -0.52
SCN1A-207ENST00000507401 ZEB1P37275 1124 aaPredicted RBP11.81□□□□□ -0.52
SCN1A-207ENST00000507401 PPLO60437 1756 aa11.8□□□□□ -0.52
SCN1A-207ENST00000507401 RGL3Q3MIN7 710 aa11.8□□□□□ -0.52
SCN1A-207ENST00000507401 FAM212AQ96EL1 285 aa11.8□□□□□ -0.52
SCN1A-207ENST00000507401 RAB3GAP2Q9H2M9 1393 aa11.79□□□□□ -0.52
SCN1A-207ENST00000507401 PRAG1Q86YV5 1406 aa11.79□□□□□ -0.52
SCN1A-207ENST00000507401 JCADQ9P266 1359 aa11.78□□□□□ -0.52
SCN1A-207ENST00000507401 PTCH1Q13635 1447 aa11.77□□□□□ -0.52
SCN1A-207ENST00000507401 BRINP3Q76B58 766 aa11.77□□□□□ -0.53
SCN1A-207ENST00000507401 KLHL34Q8N239 644 aa11.77□□□□□ -0.53
SCN1A-207ENST00000507401 TRPC6Q9Y210 931 aa11.77□□□□□ -0.53
SCN1A-207ENST00000507401 ADGRF5Q8IZF2 1346 aa11.77□□□□□ -0.53
SCN1A-207ENST00000507401 SETD1AO15047 1707 aaKnown RBP11.77□□□□□ -0.53
SCN1A-207ENST00000507401 ADGRL3Q9HAR2 1447 aa11.77□□□□□ -0.53
SCN1A-207ENST00000507401 ASTLQ6HA08 431 aaPredicted RBP11.76□□□□□ -0.53
SCN1A-207ENST00000507401 PHLPP1O60346 1717 aa11.76□□□□□ -0.53
SCN1A-207ENST00000507401 SIRT1Q96EB6 747 aa11.75□□□□□ -0.53
SCN1A-207ENST00000507401 ROBO2Q9HCK4 1378 aa11.75□□□□□ -0.53
SCN1A-207ENST00000507401 MST1RQ04912 1400 aa11.75□□□□□ -0.53
SCN1A-207ENST00000507401 AHDC1Q5TGY3 1603 aaPredicted RBP11.75□□□□□ -0.53
SCN1A-207ENST00000507401 ATMINO43313 823 aaPredicted RBP11.74□□□□□ -0.53
SCN1A-207ENST00000507401 STAC3Q96MF2 364 aa11.74□□□□□ -0.53
SCN1A-207ENST00000507401 C14orf93Q9H972 538 aaKnown RBP11.74□□□□□ -0.53
SCN1A-207ENST00000507401 RGS17Q9UGC6 210 aaPredicted RBP11.74□□□□□ -0.53
SCN1A-207ENST00000507401 SPATA31A6Q5VVP1 1343 aa11.74□□□□□ -0.53
SCN1A-207ENST00000507401 ABCC11Q96J66 1382 aa11.74□□□□□ -0.53
SCN1A-207ENST00000507401 IFT172Q9UG01 1749 aa11.74□□□□□ -0.53
SCN1A-207ENST00000507401 COL16A1Q07092 1604 aaPredicted RBP11.73□□□□□ -0.53
SCN1A-207ENST00000507401 LRRC59Q96AG4 307 aaKnown RBP11.73□□□□□ -0.53
SCN1A-207ENST00000507401 SGIP1Q9BQI5 828 aa11.73□□□□□ -0.53
SCN1A-207ENST00000507401 TECPR2O15040 1411 aa11.72□□□□□ -0.53
SCN1A-207ENST00000507401 PIK3C2GO75747 1445 aa11.72□□□□□ -0.53
SCN1A-207ENST00000507401 LRPPRCP42704 1394 aaKnown RBP11.72□□□□□ -0.53
SCN1A-207ENST00000507401 DCAF8Q5TAQ9 597 aa11.72□□□□□ -0.53
SCN1A-207ENST00000507401 NALCNQ8IZF0 1738 aa11.71□□□□□ -0.54
SCN1A-207ENST00000507401 ASXL1Q8IXJ9 1541 aa11.7□□□□□ -0.54
SCN1A-207ENST00000507401 C1orf167Q5SNV9 1468 aa11.7□□□□□ -0.54
SCN1A-207ENST00000507401 NRXN1Q9ULB1 1477 aa11.7□□□□□ -0.54
SCN1A-207ENST00000507401 TMEM132EQ6IEE7 984 aa11.7□□□□□ -0.54
SCN1A-207ENST00000507401 STK26Q9P289 416 aa11.7□□□□□ -0.54
SCN1A-207ENST00000507401 MYOM2P54296 1465 aa11.7□□□□□ -0.54
SCN1A-207ENST00000507401 LHX8Q68G74 356 aa11.69□□□□□ -0.54
SCN1A-207ENST00000507401 IFNL1Q8IU54 200 aa11.69□□□□□ -0.54
SCN1A-207ENST00000507401 SPOCK2Q92563 424 aa11.69□□□□□ -0.54
SCN1A-207ENST00000507401 BMP2KQ9NSY1 1161 aaPredicted RBP11.69□□□□□ -0.54
SCN1A-207ENST00000507401 PCDHB13Q9Y5F0 798 aa11.69□□□□□ -0.54
SCN1A-207ENST00000507401 YTHDC2Q9H6S0 1430 aaKnown RBP11.69□□□□□ -0.54
SCN1A-207ENST00000507401 SHPRHQ149N8 1683 aa11.68□□□□□ -0.54
SCN1A-207ENST00000507401 DHX57Q6P158 1386 aaKnown RBP11.68□□□□□ -0.54
SCN1A-207ENST00000507401 NHSL1Q5SYE7 1610 aa11.68□□□□□ -0.54
SCN1A-207ENST00000507401 CFAP70Q5T0N1 1121 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms