RNA–Protein interactions for RNA: ENST00000498271.1

C4A-259, Transcript of complement C4A (Rodgers blood group), human

TSL 1 (best) BASIC

Gene C4A, Length 5,269 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
C4A-259	ENST00000498271	SF3A1	Q15459	793 aa	Known RBP	18.34	■□□□□ 0.53
C4A-259	ENST00000498271	LTV1	Q96GA3	475 aa	Predicted RBP	18.33	■□□□□ 0.53
C4A-259	ENST00000498271	NOL8	Q76FK4	1167 aa	Known RBP	18.33	■□□□□ 0.52
C4A-259	ENST00000498271	C22orf23	Q9BZE7	217 aa		18.33	■□□□□ 0.52
C4A-259	ENST00000498271	TRAK2	O60296	914 aa		18.33	■□□□□ 0.52
C4A-259	ENST00000498271	CAMSAP2	Q08AD1	1489 aa		18.32	■□□□□ 0.52
C4A-259	ENST00000498271	FOXD4L5	Q5VV16	416 aa	Predicted RBP	18.32	■□□□□ 0.52
C4A-259	ENST00000498271	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	18.32	■□□□□ 0.52
C4A-259	ENST00000498271	URB2	Q14146	1524 aa	Known RBP	18.32	■□□□□ 0.52
C4A-259	ENST00000498271	PHF23	Q9BUL5	403 aa	Predicted RBP	18.32	■□□□□ 0.52
C4A-259	ENST00000498271	CABP2	Q9NPB3	220 aa		18.32	■□□□□ 0.52
C4A-259	ENST00000498271	TPM1	P09493	284 aa		18.31	■□□□□ 0.52
C4A-259	ENST00000498271	GGNBP2	Q9H3C7	697 aa		18.31	■□□□□ 0.52
C4A-259	ENST00000498271	CWC15	Q9P013	229 aa	Known RBP	18.31	■□□□□ 0.52
C4A-259	ENST00000498271	TULP1	O00294	542 aa	Predicted RBP	18.3	■□□□□ 0.52
C4A-259	ENST00000498271	ZNF592	Q92610	1267 aa		18.3	■□□□□ 0.52
C4A-259	ENST00000498271	ACBD3	Q9H3P7	528 aa		18.3	■□□□□ 0.52
C4A-259	ENST00000498271	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	18.3	■□□□□ 0.52
C4A-259	ENST00000498271	SMG6	Q86US8	1419 aa	Known RBP	18.3	■□□□□ 0.52
C4A-259	ENST00000498271	C11orf95	C9JLR9	678 aa	Predicted RBP	18.3	■□□□□ 0.52
C4A-259	ENST00000498271		H3BQV1	296 aa		18.3	■□□□□ 0.52
C4A-259	ENST00000498271	IFFO2	Q5TF58	517 aa		18.3	■□□□□ 0.52
C4A-259	ENST00000498271	ERBIN	Q96RT1	1412 aa		18.3	■□□□□ 0.52
C4A-259	ENST00000498271	MTHFS	P49914	203 aa		18.29	■□□□□ 0.52
C4A-259	ENST00000498271	ARHGEF11	O15085	1522 aa		18.29	■□□□□ 0.52
C4A-259	ENST00000498271	TSR1	Q2NL82	804 aa	Known RBP	18.29	■□□□□ 0.52
C4A-259	ENST00000498271	PLB1	Q6P1J6	1458 aa		18.29	■□□□□ 0.52
C4A-259	ENST00000498271	PANK1	Q8TE04	598 aa		18.29	■□□□□ 0.52
C4A-259	ENST00000498271	DNAJC5B	Q9UF47	199 aa		18.29	■□□□□ 0.52
C4A-259	ENST00000498271	LETM1	O95202	739 aa	Predicted RBP	18.28	■□□□□ 0.52
C4A-259	ENST00000498271	MAGI1	Q96QZ7	1491 aa	Predicted RBP	18.28	■□□□□ 0.52
C4A-259	ENST00000498271		G3V3G9	751 aa		18.28	■□□□□ 0.52
C4A-259	ENST00000498271	DCAF8	Q5TAQ9	597 aa		18.28	■□□□□ 0.52
C4A-259	ENST00000498271	MBD3	O95983	291 aa		18.27	■□□□□ 0.52
C4A-259	ENST00000498271	TCP11L2	Q8N4U5	519 aa		18.27	■□□□□ 0.51
C4A-259	ENST00000498271	SCAPER	Q9BY12	1400 aa		18.27	■□□□□ 0.51
C4A-259	ENST00000498271	CCAR2	Q8N163	923 aa	Known RBP	18.26	■□□□□ 0.51
C4A-259	ENST00000498271	FAM184A	Q8NB25	1140 aa		18.26	■□□□□ 0.51
C4A-259	ENST00000498271	GRIN2A	Q12879	1464 aa		18.25	■□□□□ 0.51
C4A-259	ENST00000498271	CCDC141	Q6ZP82	1450 aa		18.25	■□□□□ 0.51
C4A-259	ENST00000498271	MCTP1	Q6DN14	999 aa		18.25	■□□□□ 0.51
C4A-259	ENST00000498271	FRAT2	O75474	233 aa	Predicted RBP	18.25	■□□□□ 0.51
C4A-259	ENST00000498271	INTS3	Q68E01	1043 aa	Known RBP	18.25	■□□□□ 0.51
C4A-259	ENST00000498271	RUFY2	Q8WXA3	655 aa		18.25	■□□□□ 0.51
C4A-259	ENST00000498271	BACH2	Q9BYV9	841 aa		18.25	■□□□□ 0.51
C4A-259	ENST00000498271	SF3B2	Q13435	895 aa	Known RBP	18.24	■□□□□ 0.51
C4A-259	ENST00000498271	EVA1C	P58658	441 aa		18.24	■□□□□ 0.51
C4A-259	ENST00000498271	HOMER1	Q86YM7	354 aa		18.24	■□□□□ 0.51
C4A-259	ENST00000498271	CALR	P27797	417 aa	Known RBP	18.23	■□□□□ 0.51
C4A-259	ENST00000498271	IFT57	Q9NWB7	429 aa		18.23	■□□□□ 0.51
C4A-259	ENST00000498271	MAPKBP1	O60336	1514 aa		18.23	■□□□□ 0.51
C4A-259	ENST00000498271	API5	Q9BZZ5	524 aa	Known RBP	18.23	■□□□□ 0.51
C4A-259	ENST00000498271	HMOX1	P09601	288 aa		18.23	■□□□□ 0.51
C4A-259	ENST00000498271	MNS1	Q8NEH6	495 aa		18.22	■□□□□ 0.51
C4A-259	ENST00000498271	NCOA1	Q15788	1441 aa		18.22	■□□□□ 0.51
C4A-259	ENST00000498271	RPRD2	Q5VT52	1461 aa	Known RBP	18.21	■□□□□ 0.51
C4A-259	ENST00000498271	GNAI1	P63096	354 aa		18.21	■□□□□ 0.51
C4A-259	ENST00000498271	TAF3	Q5VWG9	929 aa		18.21	■□□□□ 0.51
C4A-259	ENST00000498271	SASS6	Q6UVJ0	657 aa		18.21	■□□□□ 0.51
C4A-259	ENST00000498271	SLC12A5	Q9H2X9	1139 aa		18.21	■□□□□ 0.51
C4A-259	ENST00000498271	ATF3	P18847	181 aa		18.21	■□□□□ 0.51
C4A-259	ENST00000498271	RILPL2	Q969X0	211 aa		18.21	■□□□□ 0.51
C4A-259	ENST00000498271	PODXL2	Q9NZ53	605 aa		18.21	■□□□□ 0.51
C4A-259	ENST00000498271	ZKSCAN1	P17029	563 aa	Predicted RBP	18.21	■□□□□ 0.5
C4A-259	ENST00000498271	TPD52L1	Q16890	204 aa	Predicted RBP	18.2	■□□□□ 0.5
C4A-259	ENST00000498271	HSP90B2P	Q58FF3	399 aa		18.2	■□□□□ 0.5
C4A-259	ENST00000498271	ZNF330	Q9Y3S2	320 aa	Predicted RBP	18.2	■□□□□ 0.5
C4A-259	ENST00000498271	KIF14	Q15058	1648 aa		18.2	■□□□□ 0.5
C4A-259	ENST00000498271	POGZ	Q7Z3K3	1410 aa		18.19	■□□□□ 0.5
C4A-259	ENST00000498271	GTF2E1	P29083	439 aa	Predicted RBP	18.18	■□□□□ 0.5
C4A-259	ENST00000498271	PTPRK	Q15262	1439 aa		18.18	■□□□□ 0.5
C4A-259	ENST00000498271	IPO7	O95373	1038 aa	Known RBP	18.18	■□□□□ 0.5
C4A-259	ENST00000498271	AK7	Q96M32	723 aa		18.18	■□□□□ 0.5
C4A-259	ENST00000498271	GORAB	Q5T7V8	394 aa		18.18	■□□□□ 0.5
C4A-259	ENST00000498271	CDC45	O75419	566 aa		18.17	■□□□□ 0.5
C4A-259	ENST00000498271	HOOK1	Q9UJC3	728 aa	Known RBP	18.17	■□□□□ 0.5
C4A-259	ENST00000498271	GRPEL1	Q9HAV7	217 aa		18.17	■□□□□ 0.5
C4A-259	ENST00000498271	DHX8	Q14562	1220 aa	Known RBP	18.17	■□□□□ 0.5
C4A-259	ENST00000498271	RASSF8	Q8NHQ8	419 aa		18.17	■□□□□ 0.5
C4A-259	ENST00000498271	CHMP3	Q9Y3E7	222 aa		18.17	■□□□□ 0.5
C4A-259	ENST00000498271	BICD2	Q8TD16	824 aa		18.16	■□□□□ 0.5
C4A-259	ENST00000498271	ESPN	B1AK53	854 aa		18.16	■□□□□ 0.5
C4A-259	ENST00000498271	BCAR3	O75815	825 aa		18.16	■□□□□ 0.5
C4A-259	ENST00000498271	LNPK	Q9C0E8	428 aa		18.16	■□□□□ 0.5
C4A-259	ENST00000498271	SMC3	Q9UQE7	1217 aa		18.16	■□□□□ 0.5
C4A-259	ENST00000498271	THOC2	Q8NI27	1593 aa	Known RBP	18.16	■□□□□ 0.5
C4A-259	ENST00000498271	ERCC4	Q92889	916 aa	Predicted RBP	18.16	■□□□□ 0.5
C4A-259	ENST00000498271	TSPY26P	Q9H489	355 aa		18.16	■□□□□ 0.5
C4A-259	ENST00000498271	MCM2	P49736	904 aa		18.16	■□□□□ 0.5
C4A-259	ENST00000498271	CDR1	P51861	262 aa		18.16	■□□□□ 0.5
C4A-259	ENST00000498271	PDE3A	Q14432	1141 aa		18.16	■□□□□ 0.5
C4A-259	ENST00000498271	ANKRD20A12P	Q8NF67	263 aa		18.16	■□□□□ 0.5
C4A-259	ENST00000498271	CCP110	O43303	1012 aa		18.15	■□□□□ 0.5
C4A-259	ENST00000498271	PRAM1	Q96QH2	718 aa		18.15	■□□□□ 0.5
C4A-259	ENST00000498271	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	18.15	■□□□□ 0.5
C4A-259	ENST00000498271	FOXD4L3	Q6VB84	417 aa	Predicted RBP	18.15	■□□□□ 0.5
C4A-259	ENST00000498271	ZNF608	Q9ULD9	1512 aa	Predicted RBP	18.15	■□□□□ 0.5
C4A-259	ENST00000498271	NINL	Q9Y2I6	1382 aa		18.15	■□□□□ 0.5
C4A-259	ENST00000498271	NAT10	Q9H0A0	1025 aa	Known RBP	18.14	■□□□□ 0.49
C4A-259	ENST00000498271	CIZ1	Q9ULV3	898 aa	Predicted RBP	18.14	■□□□□ 0.49

Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms