RNA–Protein interactions for RNA: ENST00000497139.5

VEGFA-215, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best)

Gene VEGFA, Length 2,746 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-215ENST00000497139 SPRYD3Q8NCJ5 442 aa16.3■□□□□ 0.2
VEGFA-215ENST00000497139 TNPO1Q92973 898 aaKnown RBP16.3■□□□□ 0.2
VEGFA-215ENST00000497139 C9orf84Q5VXU9 1444 aa16.3■□□□□ 0.2
VEGFA-215ENST00000497139 MCM5P33992 734 aa16.3■□□□□ 0.2
VEGFA-215ENST00000497139 AMER1Q5JTC6 1135 aaPredicted RBP16.3■□□□□ 0.2
VEGFA-215ENST00000497139 SPINK5Q9NQ38 1064 aaPredicted RBP16.3■□□□□ 0.2
VEGFA-215ENST00000497139 CLEC17AQ6ZS10 378 aa16.29■□□□□ 0.2
VEGFA-215ENST00000497139 A2MP01023 1474 aa16.29■□□□□ 0.2
VEGFA-215ENST00000497139 FGD1P98174 961 aa16.28■□□□□ 0.2
VEGFA-215ENST00000497139 PANK1Q8TE04 598 aa16.28■□□□□ 0.2
VEGFA-215ENST00000497139 NOL7Q9UMY1 257 aaKnown RBP16.28■□□□□ 0.2
VEGFA-215ENST00000497139 MYO5CQ9NQX4 1742 aa16.28■□□□□ 0.2
VEGFA-215ENST00000497139 RBM25P49756 843 aaKnown RBP16.28■□□□□ 0.2
VEGFA-215ENST00000497139 GOLGA6L22H0YM25 854 aa16.27■□□□□ 0.2
VEGFA-215ENST00000497139 CDCA8Q53HL2 280 aa16.27■□□□□ 0.2
VEGFA-215ENST00000497139 NBPF1Q3BBV0 1214 aa16.27■□□□□ 0.19
VEGFA-215ENST00000497139 FAM13BQ9NYF5 915 aa16.27■□□□□ 0.19
VEGFA-215ENST00000497139 APAF1O14727 1248 aa16.26■□□□□ 0.19
VEGFA-215ENST00000497139 PCDHB15Q9Y5E8 787 aa16.26■□□□□ 0.19
VEGFA-215ENST00000497139 KLHL40Q2TBA0 621 aa16.25■□□□□ 0.19
VEGFA-215ENST00000497139 UQCRHLA0A096LP55 91 aa16.25■□□□□ 0.19
VEGFA-215ENST00000497139 UQCRHP07919 91 aa16.25■□□□□ 0.19
VEGFA-215ENST00000497139 R3HCC1Q9Y3T6 440 aaKnown RBP16.25■□□□□ 0.19
VEGFA-215ENST00000497139 ARHGEF5Q12774 1597 aa16.24■□□□□ 0.19
VEGFA-215ENST00000497139 MFAP1P55081 439 aaKnown RBP16.24■□□□□ 0.19
VEGFA-215ENST00000497139 ZNF445P59923 1031 aa16.24■□□□□ 0.19
VEGFA-215ENST00000497139 DMTNQ08495 405 aa16.24■□□□□ 0.19
VEGFA-215ENST00000497139 IQGAP1P46940 1657 aa16.24■□□□□ 0.19
VEGFA-215ENST00000497139 ATP10BO94823 1461 aa16.23■□□□□ 0.19
VEGFA-215ENST00000497139 PDLIM2Q96JY6 352 aa16.23■□□□□ 0.19
VEGFA-215ENST00000497139 RARSP54136 660 aaKnown RBP16.22■□□□□ 0.19
VEGFA-215ENST00000497139 SASS6Q6UVJ0 657 aa16.22■□□□□ 0.19
VEGFA-215ENST00000497139 CCDC94Q9BW85 323 aaPredicted RBP16.22■□□□□ 0.19
VEGFA-215ENST00000497139 A0A0U1RQG5 324 aaPredicted RBP16.21■□□□□ 0.19
VEGFA-215ENST00000497139 PLEKHD1A6NEE1 506 aa16.21■□□□□ 0.19
VEGFA-215ENST00000497139 CCDC146Q8IYE0 955 aa16.21■□□□□ 0.19
VEGFA-215ENST00000497139 HSP90AB1P08238 724 aaKnown RBP16.21■□□□□ 0.19
VEGFA-215ENST00000497139 MYOM1P52179 1685 aa16.21■□□□□ 0.18
VEGFA-215ENST00000497139 KANK1Q14678 1352 aa16.2■□□□□ 0.18
VEGFA-215ENST00000497139 UNC13BO14795 1591 aa16.2■□□□□ 0.18
VEGFA-215ENST00000497139 ATP10AO60312 1499 aa16.19■□□□□ 0.18
VEGFA-215ENST00000497139 ZKSCAN5Q9Y2L8 839 aa16.19■□□□□ 0.18
VEGFA-215ENST00000497139 TNNT2P45379 298 aaPredicted RBP16.19■□□□□ 0.18
VEGFA-215ENST00000497139 HDAC1Q13547 482 aaPredicted RBP16.19■□□□□ 0.18
VEGFA-215ENST00000497139 WWC1Q8IX03 1113 aa16.19■□□□□ 0.18
VEGFA-215ENST00000497139 GTPBP4Q9BZE4 634 aaKnown RBP16.18■□□□□ 0.18
VEGFA-215ENST00000497139 NCBP3Q53F19 620 aaKnown RBP16.18■□□□□ 0.18
VEGFA-215ENST00000497139 ZNF777Q9ULD5 760 aaPredicted RBP16.18■□□□□ 0.18
VEGFA-215ENST00000497139 KIF20AO95235 890 aa16.17■□□□□ 0.18
VEGFA-215ENST00000497139 MVPQ14764 893 aaKnown RBP16.17■□□□□ 0.18
VEGFA-215ENST00000497139 PLA2R1Q13018 1463 aa16.17■□□□□ 0.18
VEGFA-215ENST00000497139 POLR3AO14802 1390 aaPredicted RBP16.16■□□□□ 0.18
VEGFA-215ENST00000497139 TSPY4P0CV99 314 aa16.16■□□□□ 0.18
VEGFA-215ENST00000497139 TSPY10P0CW01 314 aa16.16■□□□□ 0.18
VEGFA-215ENST00000497139 DMRT2Q9Y5R5 561 aa16.16■□□□□ 0.18
VEGFA-215ENST00000497139 DDX49Q9Y6V7 483 aaKnown RBP16.16■□□□□ 0.18
VEGFA-215ENST00000497139 WDR63Q8IWG1 891 aa16.16■□□□□ 0.18
VEGFA-215ENST00000497139 RLBP1P12271 317 aa16.15■□□□□ 0.18
VEGFA-215ENST00000497139 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.15■□□□□ 0.18
VEGFA-215ENST00000497139 CCDC39Q9UFE4 941 aa16.15■□□□□ 0.18
VEGFA-215ENST00000497139 KIF16BQ96L93 1317 aa16.15■□□□□ 0.18
VEGFA-215ENST00000497139 KDM5AP29375 1690 aaKnown RBP16.14■□□□□ 0.18
VEGFA-215ENST00000497139 IQSEC2Q5JU85 1478 aa16.14■□□□□ 0.17
VEGFA-215ENST00000497139 IQGAP3Q86VI3 1631 aa16.14■□□□□ 0.17
VEGFA-215ENST00000497139 K7ELQ4 463 aaPredicted RBP16.14■□□□□ 0.17
VEGFA-215ENST00000497139 CT47B1P0C2W7 299 aaPredicted RBP16.14■□□□□ 0.17
VEGFA-215ENST00000497139 PHF23Q9BUL5 403 aaPredicted RBP16.14■□□□□ 0.17
VEGFA-215ENST00000497139 ZSCAN20P17040 1043 aaPredicted RBP16.13■□□□□ 0.17
VEGFA-215ENST00000497139 CHD1O14646 1710 aa16.13■□□□□ 0.17
VEGFA-215ENST00000497139 MADDQ8WXG6 1647 aa16.12■□□□□ 0.17
VEGFA-215ENST00000497139 LETM1O95202 739 aaPredicted RBP16.12■□□□□ 0.17
VEGFA-215ENST00000497139 BAG4O95429 457 aaKnown RBP16.12■□□□□ 0.17
VEGFA-215ENST00000497139 XPCQ01831 940 aaPredicted RBP16.12■□□□□ 0.17
VEGFA-215ENST00000497139 CCDC27Q2M243 656 aa16.12■□□□□ 0.17
VEGFA-215ENST00000497139 SCAF11Q99590 1463 aaKnown RBP16.12■□□□□ 0.17
VEGFA-215ENST00000497139 REREQ9P2R6 1566 aa16.12■□□□□ 0.17
VEGFA-215ENST00000497139 STAC3Q96MF2 364 aa16.1■□□□□ 0.17
VEGFA-215ENST00000497139 RGL3Q3MIN7 710 aa16.1■□□□□ 0.17
VEGFA-215ENST00000497139 ZSCAN23Q3MJ62 389 aa16.1■□□□□ 0.17
VEGFA-215ENST00000497139 ZKSCAN2Q63HK3 967 aa16.1■□□□□ 0.17
VEGFA-215ENST00000497139 MYRIPQ8NFW9 859 aa16.1■□□□□ 0.17
VEGFA-215ENST00000497139 PRIMPOLQ96LW4 560 aa16.1■□□□□ 0.17
VEGFA-215ENST00000497139 SHPRHQ149N8 1683 aa16.1■□□□□ 0.17
VEGFA-215ENST00000497139 PREX2Q70Z35 1606 aa16.1■□□□□ 0.17
VEGFA-215ENST00000497139 TAF3Q5VWG9 929 aa16.1■□□□□ 0.17
VEGFA-215ENST00000497139 NUCB2P80303 420 aa16.09■□□□□ 0.17
VEGFA-215ENST00000497139 ZHX1Q9UKY1 873 aaPredicted RBP16.09■□□□□ 0.17
VEGFA-215ENST00000497139 TTC37Q6PGP7 1564 aa16.09■□□□□ 0.17
VEGFA-215ENST00000497139 CFAP74Q9C0B2 1584 aa16.09■□□□□ 0.17
VEGFA-215ENST00000497139 DUOX2Q9NRD8 1548 aa16.09■□□□□ 0.17
VEGFA-215ENST00000497139 CEP152O94986 1710 aa16.09■□□□□ 0.17
VEGFA-215ENST00000497139 HMGN5P82970 282 aaKnown RBP16.09■□□□□ 0.17
VEGFA-215ENST00000497139 DZIP1LQ8IYY4 767 aaKnown RBP16.09■□□□□ 0.17
VEGFA-215ENST00000497139 MAST1Q9Y2H9 1570 aa16.08■□□□□ 0.17
VEGFA-215ENST00000497139 SSFA2P28290 1259 aa16.08■□□□□ 0.16
VEGFA-215ENST00000497139 GTF2F1P35269 517 aaKnown RBP eCLIP16.08■□□□□ 0.163e-11■■■■■ 42.3
VEGFA-215ENST00000497139 RUNDC1Q96C34 613 aa16.08■□□□□ 0.16
VEGFA-215ENST00000497139 KIF2CQ99661 725 aa16.08■□□□□ 0.16
VEGFA-215ENST00000497139 DDX19BQ9UMR2 479 aa16.08■□□□□ 0.16
VEGFA-215ENST00000497139 BMP2KLQ5H9B9 411 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms