RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 DHX57Q6P158 1386 aaKnown RBP18.68■□□□□ 0.58
PTPRF-214ENST00000496043 NALCNQ8IZF0 1738 aa18.67■□□□□ 0.58
PTPRF-214ENST00000496043 STAC3Q96MF2 364 aa18.66■□□□□ 0.58
PTPRF-214ENST00000496043 KDM2AQ9Y2K7 1162 aa18.66■□□□□ 0.58
PTPRF-214ENST00000496043 TECPR2O15040 1411 aa18.66■□□□□ 0.58
PTPRF-214ENST00000496043 YTHDC2Q9H6S0 1430 aaKnown RBP18.66■□□□□ 0.58
PTPRF-214ENST00000496043 DCAF11Q8TEB1 546 aa18.65■□□□□ 0.58
PTPRF-214ENST00000496043 SOS2Q07890 1332 aaPredicted RBP18.65■□□□□ 0.58
PTPRF-214ENST00000496043 LRP6O75581 1613 aa18.64■□□□□ 0.57
PTPRF-214ENST00000496043 IFT172Q9UG01 1749 aa18.63■□□□□ 0.57
PTPRF-214ENST00000496043 NUTM2FA1L443 756 aa18.63■□□□□ 0.57
PTPRF-214ENST00000496043 PLEKHH1Q9ULM0 1364 aa18.63■□□□□ 0.57
PTPRF-214ENST00000496043 SHPRHQ149N8 1683 aa18.63■□□□□ 0.57
PTPRF-214ENST00000496043 PNPLA6Q8IY17 1366 aa18.62■□□□□ 0.57
PTPRF-214ENST00000496043 MYOM2P54296 1465 aa18.62■□□□□ 0.57
PTPRF-214ENST00000496043 NRXN1Q9ULB1 1477 aa18.62■□□□□ 0.57
PTPRF-214ENST00000496043 NHSL1Q5SYE7 1610 aa18.61■□□□□ 0.57
PTPRF-214ENST00000496043 NPHP3Q7Z494 1330 aa18.61■□□□□ 0.57
PTPRF-214ENST00000496043 FOXO3O43524 673 aa18.61■□□□□ 0.57
PTPRF-214ENST00000496043 POGKQ9P215 609 aa18.6■□□□□ 0.57
PTPRF-214ENST00000496043 PRAM1Q96QH2 718 aa18.59■□□□□ 0.57
PTPRF-214ENST00000496043 AFF2P51816 1311 aa18.58■□□□□ 0.57
PTPRF-214ENST00000496043 RXRBP28702 533 aa18.58■□□□□ 0.56
PTPRF-214ENST00000496043 C8orf37Q96NL8 207 aa18.58■□□□□ 0.56
PTPRF-214ENST00000496043 CDC42BPGQ6DT37 1551 aa18.57■□□□□ 0.56
PTPRF-214ENST00000496043 ADAMTS2O95450 1211 aa18.57■□□□□ 0.56
PTPRF-214ENST00000496043 SAFB2Q14151 953 aaKnown RBP eCLIP18.57■□□□□ 0.56
PTPRF-214ENST00000496043 NGLY1Q96IV0 654 aa18.57■□□□□ 0.56
PTPRF-214ENST00000496043 TRAK1Q9UPV9 953 aa18.56■□□□□ 0.56
PTPRF-214ENST00000496043 XPCQ01831 940 aaPredicted RBP18.55■□□□□ 0.56
PTPRF-214ENST00000496043 QTRT2Q9H974 415 aaKnown RBP18.55■□□□□ 0.56
PTPRF-214ENST00000496043 LAMC1P11047 1609 aa18.53■□□□□ 0.56
PTPRF-214ENST00000496043 KNDC1Q76NI1 1749 aa18.53■□□□□ 0.56
PTPRF-214ENST00000496043 KRT28Q7Z3Y7 464 aa18.53■□□□□ 0.56
PTPRF-214ENST00000496043 PSME1Q06323 249 aa18.52■□□□□ 0.56
PTPRF-214ENST00000496043 PHF8Q9UPP1 1060 aa18.52■□□□□ 0.56
PTPRF-214ENST00000496043 RBM6P78332 1123 aaKnown RBP18.49■□□□□ 0.55
PTPRF-214ENST00000496043 DLC1Q96QB1 1528 aa18.49■□□□□ 0.55
PTPRF-214ENST00000496043 PXDNQ92626 1479 aa18.48■□□□□ 0.55
PTPRF-214ENST00000496043 FNBP4Q8N3X1 1017 aaPredicted RBP18.48■□□□□ 0.55
PTPRF-214ENST00000496043 HIRIP3Q9BW71 556 aaPredicted RBP18.48■□□□□ 0.55
PTPRF-214ENST00000496043 USP21Q9UK80 565 aa18.48■□□□□ 0.55
PTPRF-214ENST00000496043 SPATA31A3Q5VYP0 1347 aa18.48■□□□□ 0.55
PTPRF-214ENST00000496043 MINK1Q8N4C8 1332 aaPredicted RBP18.48■□□□□ 0.55
PTPRF-214ENST00000496043 ADGRB1O14514 1584 aa18.47■□□□□ 0.55
PTPRF-214ENST00000496043 PMFBP1Q8TBY8 1022 aa18.46■□□□□ 0.55
PTPRF-214ENST00000496043 FMN2Q9NZ56 1722 aa18.46■□□□□ 0.55
PTPRF-214ENST00000496043 WASLO00401 505 aaPredicted RBP18.45■□□□□ 0.54
PTPRF-214ENST00000496043 TRPC5Q9UL62 973 aaPredicted RBP18.45■□□□□ 0.54
PTPRF-214ENST00000496043 LMOD2Q6P5Q4 547 aa18.43■□□□□ 0.54
PTPRF-214ENST00000496043 EIF3AQ14152 1382 aaKnown RBP18.42■□□□□ 0.54
PTPRF-214ENST00000496043 ANKARQ7Z5J8 1434 aa18.42■□□□□ 0.54
PTPRF-214ENST00000496043 CDK12Q9NYV4 1490 aaPredicted RBP18.42■□□□□ 0.54
PTPRF-214ENST00000496043 HAP1P54257 671 aaPredicted RBP18.41■□□□□ 0.54
PTPRF-214ENST00000496043 UPF1Q92900 1129 aaKnown RBP eCLIP18.41■□□□□ 0.54
PTPRF-214ENST00000496043 COL22A1Q8NFW1 1626 aaPredicted RBP18.41■□□□□ 0.54
PTPRF-214ENST00000496043 KIF1AQ12756 1690 aa18.4■□□□□ 0.54
PTPRF-214ENST00000496043 SBNO1A3KN83 1393 aa18.4■□□□□ 0.54
PTPRF-214ENST00000496043 NBPF1Q3BBV0 1214 aa18.39■□□□□ 0.53
PTPRF-214ENST00000496043 NGDNQ8NEJ9 315 aaKnown RBP18.38■□□□□ 0.53
PTPRF-214ENST00000496043 L3MBTL2Q969R5 705 aa18.38■□□□□ 0.53
PTPRF-214ENST00000496043 PRR36Q9H6K5 1346 aa18.38■□□□□ 0.53
PTPRF-214ENST00000496043 GPRASP1Q5JY77 1395 aa18.38■□□□□ 0.53
PTPRF-214ENST00000496043 PLEKHG5O94827 1062 aa18.37■□□□□ 0.53
PTPRF-214ENST00000496043 NEUROD1Q13562 356 aa18.37■□□□□ 0.53
PTPRF-214ENST00000496043 CABLES1Q8TDN4 633 aa18.37■□□□□ 0.53
PTPRF-214ENST00000496043 NUDT16Q96DE0 195 aaKnown RBP18.37■□□□□ 0.53
PTPRF-214ENST00000496043 SIN3AQ96ST3 1273 aa18.37■□□□□ 0.53
PTPRF-214ENST00000496043 CDK19Q9BWU1 502 aa18.37■□□□□ 0.53
PTPRF-214ENST00000496043 RGPD8O14715 1765 aaPredicted RBP18.36■□□□□ 0.53
PTPRF-214ENST00000496043 ARHGEF10O15013 1369 aa18.36■□□□□ 0.53
PTPRF-214ENST00000496043 TNS3Q68CZ2 1445 aa18.36■□□□□ 0.53
PTPRF-214ENST00000496043 UNC5CLQ8IV45 518 aa18.36■□□□□ 0.53
PTPRF-214ENST00000496043 ADGRB2O60241 1585 aa18.35■□□□□ 0.53
PTPRF-214ENST00000496043 ATRNO75882 1429 aa18.34■□□□□ 0.53
PTPRF-214ENST00000496043 GJD4Q96KN9 370 aaPredicted RBP18.34■□□□□ 0.53
PTPRF-214ENST00000496043 BCL9LQ86UU0 1499 aa18.33■□□□□ 0.53
PTPRF-214ENST00000496043 PAK3O75914 559 aaPredicted RBP18.33■□□□□ 0.52
PTPRF-214ENST00000496043 TULP4Q9NRJ4 1543 aa18.33■□□□□ 0.52
PTPRF-214ENST00000496043 RGS12O14924 1447 aa18.32■□□□□ 0.52
PTPRF-214ENST00000496043 CCDC61Q9Y6R9 512 aa18.32■□□□□ 0.52
PTPRF-214ENST00000496043 USP32Q8NFA0 1604 aa18.31■□□□□ 0.52
PTPRF-214ENST00000496043 FAM83GA6ND36 823 aa18.3■□□□□ 0.52
PTPRF-214ENST00000496043 CENPJQ9HC77 1338 aaPredicted RBP18.29■□□□□ 0.52
PTPRF-214ENST00000496043 KIAA1210Q9ULL0 1709 aa18.29■□□□□ 0.52
PTPRF-214ENST00000496043 PLEKHG3A1L390 1219 aa18.28■□□□□ 0.52
PTPRF-214ENST00000496043 NBPF8Q3BBV2 869 aa18.28■□□□□ 0.52
PTPRF-214ENST00000496043 SLIT2O94813 1529 aa18.28■□□□□ 0.52
PTPRF-214ENST00000496043 SRPK2P78362 688 aaKnown RBP18.27■□□□□ 0.52
PTPRF-214ENST00000496043 VPS72Q15906 364 aa18.27■□□□□ 0.52
PTPRF-214ENST00000496043 ARHGEF28Q8N1W1 1705 aaKnown RBP18.26■□□□□ 0.51
PTPRF-214ENST00000496043 ACEP12821 1306 aa18.26■□□□□ 0.51
PTPRF-214ENST00000496043 CCDC9Q9Y3X0 531 aaKnown RBP18.26■□□□□ 0.51
PTPRF-214ENST00000496043 ATAD2Q6PL18 1390 aa18.26■□□□□ 0.51
PTPRF-214ENST00000496043 MARF1Q9Y4F3 1742 aaKnown RBP18.26■□□□□ 0.51
PTPRF-214ENST00000496043 TRIM26Q12899 539 aaPredicted RBP18.24■□□□□ 0.51
PTPRF-214ENST00000496043 CABP2Q9NPB3 220 aa18.24■□□□□ 0.51
PTPRF-214ENST00000496043 ATP7BP35670 1465 aa18.24■□□□□ 0.51
PTPRF-214ENST00000496043 BTG4Q9NY30 223 aa18.23■□□□□ 0.51
PTPRF-214ENST00000496043 POLR3AO14802 1390 aaPredicted RBP18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms