RNA–Protein interactions for RNA: ENST00000495835.1

HLA-C-209, Transcript of major histocompatibility complex, class I, C, humanhuman

Gene HLA-C, Length 1,073 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-C-209ENST00000495835 CDC42BPGQ6DT37 1551 aa35.5■■■■□ 3.27
HLA-C-209ENST00000495835 DHX57Q6P158 1386 aaKnown RBP35.49■■■■□ 3.27
HLA-C-209ENST00000495835 CFAP70Q5T0N1 1121 aa35.46■■■■□ 3.27
HLA-C-209ENST00000495835 WAPLQ7Z5K2 1190 aa35.44■■■■□ 3.26
HLA-C-209ENST00000495835 ORAI2Q96SN7 254 aa35.41■■■■□ 3.26
HLA-C-209ENST00000495835 DCAF11Q8TEB1 546 aa35.4■■■■□ 3.26
HLA-C-209ENST00000495835 SOS2Q07890 1332 aaPredicted RBP35.37■■■■□ 3.25
HLA-C-209ENST00000495835 LRP6O75581 1613 aa35.37■■■■□ 3.25
HLA-C-209ENST00000495835 PLEKHH1Q9ULM0 1364 aa35.36■■■■□ 3.25
HLA-C-209ENST00000495835 DDX17Q92841 729 aaKnown RBP35.35■■■■□ 3.25
HLA-C-209ENST00000495835 DLC1Q96QB1 1528 aa35.35■■■■□ 3.25
HLA-C-209ENST00000495835 MEX3CQ5U5Q3 659 aaKnown RBP35.34■■■■□ 3.25
HLA-C-209ENST00000495835 KDM2AQ9Y2K7 1162 aa35.33■■■■□ 3.25
HLA-C-209ENST00000495835 ESCO1Q5FWF5 840 aa35.32■■■■□ 3.24
HLA-C-209ENST00000495835 POTEAQ6S8J7 498 aa35.32■■■■□ 3.24
HLA-C-209ENST00000495835 ADGRB1O14514 1584 aa35.31■■■■□ 3.24
HLA-C-209ENST00000495835 PNPLA6Q8IY17 1366 aa35.31■■■■□ 3.24
HLA-C-209ENST00000495835 NPHP3Q7Z494 1330 aa35.31■■■■□ 3.24
HLA-C-209ENST00000495835 FMN2Q9NZ56 1722 aa35.3■■■■□ 3.24
HLA-C-209ENST00000495835 ZNF772Q68DY9 489 aaPredicted RBP35.28■■■■□ 3.24
HLA-C-209ENST00000495835 PRAM1Q96QH2 718 aa35.26■■■■□ 3.24
HLA-C-209ENST00000495835 NUTM2BA6NNL0 878 aaPredicted RBP35.25■■■■□ 3.23
HLA-C-209ENST00000495835 NUTM2EB1AL46 878 aaPredicted RBP35.25■■■■□ 3.23
HLA-C-209ENST00000495835 NUTM2AQ8IVF1 878 aaPredicted RBP35.25■■■■□ 3.23
HLA-C-209ENST00000495835 POGKQ9P215 609 aa35.24■■■■□ 3.23
HLA-C-209ENST00000495835 KIF1AQ12756 1690 aa35.21■■■■□ 3.23
HLA-C-209ENST00000495835 NUTM2FA1L443 756 aa35.19■■■■□ 3.22
HLA-C-209ENST00000495835 FOXO3O43524 673 aa35.19■■■■□ 3.22
HLA-C-209ENST00000495835 PXDNQ92626 1479 aa35.19■■■■□ 3.22
HLA-C-209ENST00000495835 TRAK1Q9UPV9 953 aa35.18■■■■□ 3.22
HLA-C-209ENST00000495835 ADGRB2O60241 1585 aa35.17■■■■□ 3.22
HLA-C-209ENST00000495835 COL22A1Q8NFW1 1626 aaPredicted RBP35.17■■■■□ 3.22
HLA-C-209ENST00000495835 KIAA1210Q9ULL0 1709 aa35.15■■■■□ 3.22
HLA-C-209ENST00000495835 SAFB2Q14151 953 aaKnown RBP eCLIP35.14■■■■□ 3.22
HLA-C-209ENST00000495835 ANKARQ7Z5J8 1434 aa35.13■■■■□ 3.21
HLA-C-209ENST00000495835 RGPD8O14715 1765 aaPredicted RBP35.11■■■■□ 3.21
HLA-C-209ENST00000495835 AFF2P51816 1311 aa35.1■■■■□ 3.21
HLA-C-209ENST00000495835 PHF8Q9UPP1 1060 aa35.1■■■■□ 3.21
HLA-C-209ENST00000495835 EIF3AQ14152 1382 aaKnown RBP35.1■■■■□ 3.21
HLA-C-209ENST00000495835 C8orf37Q96NL8 207 aa35.06■■■■□ 3.2
HLA-C-209ENST00000495835 PSME1Q06323 249 aa35.05■■■■□ 3.2
HLA-C-209ENST00000495835 KRT28Q7Z3Y7 464 aa35.05■■■■□ 3.2
HLA-C-209ENST00000495835 ARHGEF28Q8N1W1 1705 aaKnown RBP35.05■■■■□ 3.2
HLA-C-209ENST00000495835 XPCQ01831 940 aaPredicted RBP35.04■■■■□ 3.2
HLA-C-209ENST00000495835 SPATA31A3Q5VYP0 1347 aa35.04■■■■□ 3.2
HLA-C-209ENST00000495835 RXRBP28702 533 aa35.03■■■■□ 3.2
HLA-C-209ENST00000495835 NGLY1Q96IV0 654 aa35.03■■■■□ 3.2
HLA-C-209ENST00000495835 WASLO00401 505 aaPredicted RBP35.02■■■■□ 3.2
HLA-C-209ENST00000495835 ADAMTS2O95450 1211 aa35.02■■■■□ 3.2
HLA-C-209ENST00000495835 USP32Q8NFA0 1604 aa35.02■■■■□ 3.2
HLA-C-209ENST00000495835 MINK1Q8N4C8 1332 aaPredicted RBP35.02■■■■□ 3.2
HLA-C-209ENST00000495835 CDK12Q9NYV4 1490 aaPredicted RBP35■■■■□ 3.19
HLA-C-209ENST00000495835 HIRIP3Q9BW71 556 aaPredicted RBP34.99■■■■□ 3.19
HLA-C-209ENST00000495835 TULP4Q9NRJ4 1543 aa34.99■■■■□ 3.19
HLA-C-209ENST00000495835 FNBP4Q8N3X1 1017 aaPredicted RBP34.97■■■■□ 3.19
HLA-C-209ENST00000495835 SBNO1A3KN83 1393 aa34.97■■■■□ 3.19
HLA-C-209ENST00000495835 QTRT2Q9H974 415 aaKnown RBP34.96■■■■□ 3.19
HLA-C-209ENST00000495835 MARF1Q9Y4F3 1742 aaKnown RBP34.95■■■■□ 3.19
HLA-C-209ENST00000495835 L3MBTL2Q969R5 705 aa34.95■■■■□ 3.19
HLA-C-209ENST00000495835 TNS3Q68CZ2 1445 aa34.94■■■■□ 3.18
HLA-C-209ENST00000495835 RBM6P78332 1123 aaKnown RBP34.93■■■■□ 3.18
HLA-C-209ENST00000495835 NBPF1Q3BBV0 1214 aa34.92■■■■□ 3.18
HLA-C-209ENST00000495835 SIN3AQ96ST3 1273 aa34.92■■■■□ 3.18
HLA-C-209ENST00000495835 PMFBP1Q8TBY8 1022 aa34.91■■■■□ 3.18
HLA-C-209ENST00000495835 PRR36Q9H6K5 1346 aa34.9■■■■□ 3.18
HLA-C-209ENST00000495835 USP21Q9UK80 565 aa34.9■■■■□ 3.18
HLA-C-209ENST00000495835 ARHGEF10O15013 1369 aa34.89■■■■□ 3.18
HLA-C-209ENST00000495835 TRIM26Q12899 539 aaPredicted RBP34.88■■■■□ 3.17
HLA-C-209ENST00000495835 GPRASP1Q5JY77 1395 aa34.87■■■■□ 3.17
HLA-C-209ENST00000495835 ITSN1Q15811 1721 aa34.87■■■■□ 3.17
HLA-C-209ENST00000495835 TRPC5Q9UL62 973 aaPredicted RBP34.87■■■■□ 3.17
HLA-C-209ENST00000495835 NEUROD1Q13562 356 aa34.84■■■■□ 3.17
HLA-C-209ENST00000495835 NUDT16Q96DE0 195 aaKnown RBP34.84■■■■□ 3.17
HLA-C-209ENST00000495835 CDK19Q9BWU1 502 aa34.83■■■■□ 3.17
HLA-C-209ENST00000495835 ATP7BP35670 1465 aa34.83■■■■□ 3.17
HLA-C-209ENST00000495835 TRPM3Q9HCF6 1732 aaPredicted RBP34.81■■■■□ 3.16
HLA-C-209ENST00000495835 NGDNQ8NEJ9 315 aaKnown RBP34.8■■■■□ 3.16
HLA-C-209ENST00000495835 ATRNO75882 1429 aa34.8■■■■□ 3.16
HLA-C-209ENST00000495835 CENPJQ9HC77 1338 aaPredicted RBP34.8■■■■□ 3.16
HLA-C-209ENST00000495835 BCL9LQ86UU0 1499 aa34.79■■■■□ 3.16
HLA-C-209ENST00000495835 TRPM1Q7Z4N2 1603 aa34.78■■■■□ 3.16
HLA-C-209ENST00000495835 HAP1P54257 671 aaPredicted RBP34.77■■■■□ 3.16
HLA-C-209ENST00000495835 LMOD2Q6P5Q4 547 aa34.77■■■■□ 3.16
HLA-C-209ENST00000495835 CCDC61Q9Y6R9 512 aa34.77■■■■□ 3.16
HLA-C-209ENST00000495835 ALS2Q96Q42 1657 aa34.76■■■■□ 3.16
HLA-C-209ENST00000495835 TNKS1BP1Q9C0C2 1729 aaKnown RBP34.76■■■■□ 3.16
HLA-C-209ENST00000495835 SLIT2O94813 1529 aa34.76■■■■□ 3.15
HLA-C-209ENST00000495835 RGS12O14924 1447 aa34.74■■■■□ 3.15
HLA-C-209ENST00000495835 TOPAZ1Q8N9V7 1692 aa34.73■■■■□ 3.15
HLA-C-209ENST00000495835 ABCA3Q99758 1704 aa34.72■■■■□ 3.15
HLA-C-209ENST00000495835 PLEKHG3A1L390 1219 aa34.72■■■■□ 3.15
HLA-C-209ENST00000495835 UNC5CLQ8IV45 518 aa34.71■■■■□ 3.15
HLA-C-209ENST00000495835 CABLES1Q8TDN4 633 aa34.71■■■■□ 3.15
HLA-C-209ENST00000495835 POLR3AO14802 1390 aaPredicted RBP34.71■■■■□ 3.15
HLA-C-209ENST00000495835 UPF1Q92900 1129 aaKnown RBP eCLIP34.69■■■■□ 3.14
HLA-C-209ENST00000495835 ROCK2O75116 1388 aaKnown RBP34.69■■■■□ 3.14
HLA-C-209ENST00000495835 QRICH2Q9H0J4 1663 aa34.69■■■■□ 3.14
HLA-C-209ENST00000495835 GJD4Q96KN9 370 aaPredicted RBP34.67■■■■□ 3.14
HLA-C-209ENST00000495835 NWD2Q9ULI1 1742 aa34.67■■■■□ 3.14
HLA-C-209ENST00000495835 ACEP12821 1306 aa34.65■■■■□ 3.14
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms