RNA–Protein interactions for RNA: ENST00000495688.5

PTPN7-217, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

TSL 1 (best)

Gene PTPN7, Length 2,689 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-217ENST00000495688 DAXXQ9UER7 740 aaPredicted RBP16.84■□□□□ 0.29
PTPN7-217ENST00000495688 MYO3AQ8NEV4 1616 aa16.84■□□□□ 0.29
PTPN7-217ENST00000495688 NPATQ14207 1427 aa16.84■□□□□ 0.29
PTPN7-217ENST00000495688 BCL2L13Q9BXK5 485 aa16.84■□□□□ 0.29
PTPN7-217ENST00000495688 C14orf93Q9H972 538 aaKnown RBP16.84■□□□□ 0.29
PTPN7-217ENST00000495688 ADGRB3O60242 1522 aa16.84■□□□□ 0.29
PTPN7-217ENST00000495688 SHPRHQ149N8 1683 aa16.83■□□□□ 0.29
PTPN7-217ENST00000495688 MTHFSP49914 203 aa16.83■□□□□ 0.28
PTPN7-217ENST00000495688 CLUAP1Q96AJ1 413 aa16.83■□□□□ 0.28
PTPN7-217ENST00000495688 PDE3AQ14432 1141 aa16.83■□□□□ 0.28
PTPN7-217ENST00000495688 IL27Q8NEV9 243 aa16.83■□□□□ 0.28
PTPN7-217ENST00000495688 CGNL1Q0VF96 1302 aa16.82■□□□□ 0.28
PTPN7-217ENST00000495688 RUNDC1Q96C34 613 aa16.81■□□□□ 0.28
PTPN7-217ENST00000495688 QRICH2Q9H0J4 1663 aa16.81■□□□□ 0.28
PTPN7-217ENST00000495688 SEC24BO95487 1268 aa16.81■□□□□ 0.28
PTPN7-217ENST00000495688 RLBP1P12271 317 aa16.81■□□□□ 0.28
PTPN7-217ENST00000495688 RARSP54136 660 aaKnown RBP16.81■□□□□ 0.28
PTPN7-217ENST00000495688 NGEFQ8N5V2 710 aa16.81■□□□□ 0.28
PTPN7-217ENST00000495688 ZNF518AQ6AHZ1 1483 aa16.8■□□□□ 0.28
PTPN7-217ENST00000495688 ADGRB1O14514 1584 aa16.8■□□□□ 0.28
PTPN7-217ENST00000495688 SETBP1Q9Y6X0 1596 aa16.8■□□□□ 0.28
PTPN7-217ENST00000495688 LMTK2Q8IWU2 1503 aa16.79■□□□□ 0.28
PTPN7-217ENST00000495688 SAFB2Q14151 953 aaKnown RBP eCLIP16.79■□□□□ 0.28
PTPN7-217ENST00000495688 PPLO60437 1756 aa16.78■□□□□ 0.28
PTPN7-217ENST00000495688 USP19O94966 1318 aa16.78■□□□□ 0.28
PTPN7-217ENST00000495688 ZC3H13Q5T200 1668 aaKnown RBP16.78■□□□□ 0.28
PTPN7-217ENST00000495688 PHF23Q9BUL5 403 aaPredicted RBP16.77■□□□□ 0.28
PTPN7-217ENST00000495688 PCDHB15Q9Y5E8 787 aa16.77■□□□□ 0.28
PTPN7-217ENST00000495688 FRMPD1Q5SYB0 1578 aa16.77■□□□□ 0.27
PTPN7-217ENST00000495688 IQSEC2Q5JU85 1478 aa16.77■□□□□ 0.27
PTPN7-217ENST00000495688 CABP2Q9NPB3 220 aa16.76■□□□□ 0.27
PTPN7-217ENST00000495688 RTN4Q9NQC3 1192 aaKnown RBP16.76■□□□□ 0.27
PTPN7-217ENST00000495688 FRAT2O75474 233 aaPredicted RBP16.74■□□□□ 0.27
PTPN7-217ENST00000495688 U2AF1L5P0DN76 240 aaPredicted RBP16.74■□□□□ 0.27
PTPN7-217ENST00000495688 U2AF1Q01081 240 aaKnown RBP eCLIP16.74■□□□□ 0.27
PTPN7-217ENST00000495688 GSE1Q14687 1217 aa16.73■□□□□ 0.27
PTPN7-217ENST00000495688 NINLQ9Y2I6 1382 aa16.73■□□□□ 0.27
PTPN7-217ENST00000495688 WDR63Q8IWG1 891 aa16.73■□□□□ 0.27
PTPN7-217ENST00000495688 POGZQ7Z3K3 1410 aa16.73■□□□□ 0.27
PTPN7-217ENST00000495688 CFAP53Q96M91 514 aa16.73■□□□□ 0.27
PTPN7-217ENST00000495688 CD109Q6YHK3 1445 aa16.72■□□□□ 0.27
PTPN7-217ENST00000495688 RAPGEF3O95398 923 aa16.72■□□□□ 0.27
PTPN7-217ENST00000495688 TULP4Q9NRJ4 1543 aa16.72■□□□□ 0.27
PTPN7-217ENST00000495688 STK26Q9P289 416 aa16.72■□□□□ 0.27
PTPN7-217ENST00000495688 EVC2Q86UK5 1308 aa16.71■□□□□ 0.27
PTPN7-217ENST00000495688 MAPK8IP3Q9UPT6 1336 aa16.71■□□□□ 0.27
PTPN7-217ENST00000495688 GLI2P10070 1586 aa16.71■□□□□ 0.27
PTPN7-217ENST00000495688 TSR2Q969E8 191 aaKnown RBP16.71■□□□□ 0.27
PTPN7-217ENST00000495688 VIRMAQ69YN4 1812 aaKnown RBP16.71■□□□□ 0.26
PTPN7-217ENST00000495688 SIGLEC1Q9BZZ2 1709 aa16.71■□□□□ 0.26
PTPN7-217ENST00000495688 NPM1P06748 294 aaKnown RBP eCLIP16.7■□□□□ 0.26
PTPN7-217ENST00000495688 ABCC3O15438 1527 aa16.7■□□□□ 0.26
PTPN7-217ENST00000495688 RPGRIP1LQ68CZ1 1315 aa16.69■□□□□ 0.26
PTPN7-217ENST00000495688 ANKRD36BQ8N2N9 1353 aa16.69■□□□□ 0.26
PTPN7-217ENST00000495688 GGNBP2Q9H3C7 697 aa16.69■□□□□ 0.26
PTPN7-217ENST00000495688 HECW2Q9P2P5 1572 aa16.69■□□□□ 0.26
PTPN7-217ENST00000495688 CCDC27Q2M243 656 aa16.69■□□□□ 0.26
PTPN7-217ENST00000495688 PDZRN3Q9UPQ7 1066 aa16.69■□□□□ 0.26
PTPN7-217ENST00000495688 MLH3Q9UHC1 1453 aa16.69■□□□□ 0.26
PTPN7-217ENST00000495688 PMFBP1Q8TBY8 1022 aa16.68■□□□□ 0.26
PTPN7-217ENST00000495688 BRPF3Q9ULD4 1205 aa16.68■□□□□ 0.26
PTPN7-217ENST00000495688 U2SURPO15042 1029 aaKnown RBP16.68■□□□□ 0.26
PTPN7-217ENST00000495688 USP32Q8NFA0 1604 aa16.68■□□□□ 0.26
PTPN7-217ENST00000495688 ARHGEF28Q8N1W1 1705 aaKnown RBP16.67■□□□□ 0.26
PTPN7-217ENST00000495688 VGFO15240 615 aaPredicted RBP16.67■□□□□ 0.26
PTPN7-217ENST00000495688 IDI1Q13907 227 aa16.67■□□□□ 0.26
PTPN7-217ENST00000495688 NLRP1Q9C000 1473 aa16.67■□□□□ 0.26
PTPN7-217ENST00000495688 SRPK2P78362 688 aaKnown RBP16.66■□□□□ 0.26
PTPN7-217ENST00000495688 MYH16Q9H6N6 1097 aa16.66■□□□□ 0.26
PTPN7-217ENST00000495688 A0A1W2PP64 1363 aa16.66■□□□□ 0.26
PTPN7-217ENST00000495688 SLKQ9H2G2 1235 aaPredicted RBP16.65■□□□□ 0.26
PTPN7-217ENST00000495688 NEXMIFQ5QGS0 1516 aa16.65■□□□□ 0.26
PTPN7-217ENST00000495688 CAMSAP1Q5T5Y3 1602 aa16.65■□□□□ 0.26
PTPN7-217ENST00000495688 EXOSC9Q06265 439 aaKnown RBP16.64■□□□□ 0.26
PTPN7-217ENST00000495688 MVPQ14764 893 aaKnown RBP16.64■□□□□ 0.25
PTPN7-217ENST00000495688 MINK1Q8N4C8 1332 aaPredicted RBP16.63■□□□□ 0.25
PTPN7-217ENST00000495688 FTSJ3Q8IY81 847 aaKnown RBP16.63■□□□□ 0.25
PTPN7-217ENST00000495688 ZKSCAN2Q63HK3 967 aa16.63■□□□□ 0.25
PTPN7-217ENST00000495688 PLEKHF1Q96S99 279 aa16.63■□□□□ 0.25
PTPN7-217ENST00000495688 SMC4Q9NTJ3 1288 aa16.63■□□□□ 0.25
PTPN7-217ENST00000495688 TRIM35Q9UPQ4 493 aa16.63■□□□□ 0.25
PTPN7-217ENST00000495688 RWDD1Q9H446 243 aaPredicted RBP16.62■□□□□ 0.25
PTPN7-217ENST00000495688 NSD2O96028 1365 aa16.62■□□□□ 0.25
PTPN7-217ENST00000495688 TMPOP42166 694 aaKnown RBP16.62■□□□□ 0.25
PTPN7-217ENST00000495688 DZIP1LQ8IYY4 767 aaKnown RBP16.62■□□□□ 0.25
PTPN7-217ENST00000495688 PIK3C2BO00750 1634 aa16.61■□□□□ 0.25
PTPN7-217ENST00000495688 ADGRB2O60241 1585 aa16.61■□□□□ 0.25
PTPN7-217ENST00000495688 PUS7Q96PZ0 661 aaKnown RBP16.61■□□□□ 0.25
PTPN7-217ENST00000495688 ABCC11Q96J66 1382 aa16.61■□□□□ 0.25
PTPN7-217ENST00000495688 FYB1O15117 783 aa16.61■□□□□ 0.25
PTPN7-217ENST00000495688 TRIM27P14373 513 aa16.61■□□□□ 0.25
PTPN7-217ENST00000495688 SSH1Q8WYL5 1049 aa16.61■□□□□ 0.25
PTPN7-217ENST00000495688 AAMPQ13685 434 aa16.6■□□□□ 0.25
PTPN7-217ENST00000495688 PRAM1Q96QH2 718 aa16.6■□□□□ 0.25
PTPN7-217ENST00000495688 TBC1D32Q96NH3 1257 aa16.59■□□□□ 0.25
PTPN7-217ENST00000495688 FBLN1P23142 703 aa16.59■□□□□ 0.25
PTPN7-217ENST00000495688 CFAP74Q9C0B2 1584 aa16.58■□□□□ 0.25
PTPN7-217ENST00000495688 BECN1Q14457 450 aa16.58■□□□□ 0.25
PTPN7-217ENST00000495688 ITPRIPQ8IWB1 547 aa16.58■□□□□ 0.24
PTPN7-217ENST00000495688 MYO5BQ9ULV0 1848 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms