RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 CAMSAP1Q5T5Y3 1602 aa21.61■■□□□ 1.05
CCDC88B-210ENST00000494566 TCERG1O14776 1098 aaKnown RBP21.6■■□□□ 1.05
CCDC88B-210ENST00000494566 DIP2CQ9Y2E4 1556 aa21.59■■□□□ 1.05
CCDC88B-210ENST00000494566 MYO3AQ8NEV4 1616 aa21.59■■□□□ 1.05
CCDC88B-210ENST00000494566 BCAR3O75815 825 aa21.58■■□□□ 1.05
CCDC88B-210ENST00000494566 FBXO31Q5XUX0 539 aaPredicted RBP21.58■■□□□ 1.04
CCDC88B-210ENST00000494566 SLC24A1O60721 1099 aa21.57■■□□□ 1.04
CCDC88B-210ENST00000494566 SBNO2Q9Y2G9 1366 aa21.57■■□□□ 1.04
CCDC88B-210ENST00000494566 SETBP1Q9Y6X0 1596 aa21.57■■□□□ 1.04
CCDC88B-210ENST00000494566 NEO1Q92859 1461 aa21.55■■□□□ 1.04
CCDC88B-210ENST00000494566 VGFO15240 615 aaPredicted RBP21.55■■□□□ 1.04
CCDC88B-210ENST00000494566 GLI2P10070 1586 aa21.54■■□□□ 1.04
CCDC88B-210ENST00000494566 RPGRIP1LQ68CZ1 1315 aa21.54■■□□□ 1.04
CCDC88B-210ENST00000494566 ZC3H13Q5T200 1668 aaKnown RBP21.54■■□□□ 1.04
CCDC88B-210ENST00000494566 MTHFSP49914 203 aa21.53■■□□□ 1.04
CCDC88B-210ENST00000494566 ANO8Q9HCE9 1232 aaPredicted RBP21.52■■□□□ 1.04
CCDC88B-210ENST00000494566 NEXMIFQ5QGS0 1516 aa21.52■■□□□ 1.04
CCDC88B-210ENST00000494566 RICTORQ6R327 1708 aa21.52■■□□□ 1.03
CCDC88B-210ENST00000494566 MYO5BQ9ULV0 1848 aa21.52■■□□□ 1.03
CCDC88B-210ENST00000494566 FAM69CQ0P6D2 419 aa21.51■■□□□ 1.03
CCDC88B-210ENST00000494566 MINK1Q8N4C8 1332 aaPredicted RBP21.51■■□□□ 1.03
CCDC88B-210ENST00000494566 SRPK2P78362 688 aaKnown RBP21.5■■□□□ 1.03
CCDC88B-210ENST00000494566 TRMT2AQ8IZ69 625 aaKnown RBP21.5■■□□□ 1.03
CCDC88B-210ENST00000494566 TULP4Q9NRJ4 1543 aa21.5■■□□□ 1.03
CCDC88B-210ENST00000494566 EVC2Q86UK5 1308 aa21.5■■□□□ 1.03
CCDC88B-210ENST00000494566 WWC1Q8IX03 1113 aa21.49■■□□□ 1.03
CCDC88B-210ENST00000494566 MLECQ14165 292 aa21.49■■□□□ 1.03
CCDC88B-210ENST00000494566 DAXXQ9UER7 740 aaPredicted RBP21.49■■□□□ 1.03
CCDC88B-210ENST00000494566 POLR3AO14802 1390 aaPredicted RBP21.48■■□□□ 1.03
CCDC88B-210ENST00000494566 PIK3C2BO00750 1634 aa21.48■■□□□ 1.03
CCDC88B-210ENST00000494566 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.48■■□□□ 1.03
CCDC88B-210ENST00000494566 CGNL1Q0VF96 1302 aa21.48■■□□□ 1.03
CCDC88B-210ENST00000494566 ARHGEF28Q8N1W1 1705 aaKnown RBP21.47■■□□□ 1.03
CCDC88B-210ENST00000494566 E9PSI1 815 aa21.47■■□□□ 1.03
CCDC88B-210ENST00000494566 NKTRP30414 1462 aaKnown RBP21.47■■□□□ 1.03
CCDC88B-210ENST00000494566 TCP11L2Q8N4U5 519 aa21.46■■□□□ 1.03
CCDC88B-210ENST00000494566 TSPOAP1O95153 1857 aa21.46■■□□□ 1.03
CCDC88B-210ENST00000494566 GGNBP2Q9H3C7 697 aa21.46■■□□□ 1.03
CCDC88B-210ENST00000494566 PRAM1Q96QH2 718 aa21.45■■□□□ 1.03
CCDC88B-210ENST00000494566 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.45■■□□□ 1.02
CCDC88B-210ENST00000494566 SHPRHQ149N8 1683 aa21.45■■□□□ 1.02
CCDC88B-210ENST00000494566 STAG3Q9UJ98 1225 aa21.45■■□□□ 1.02
CCDC88B-210ENST00000494566 KDM2BQ8NHM5 1336 aa21.43■■□□□ 1.02
CCDC88B-210ENST00000494566 BCL2L13Q9BXK5 485 aa21.43■■□□□ 1.02
CCDC88B-210ENST00000494566 BRPF3Q9ULD4 1205 aa21.43■■□□□ 1.02
CCDC88B-210ENST00000494566 FRAT1Q92837 279 aaPredicted RBP21.43■■□□□ 1.02
CCDC88B-210ENST00000494566 SLC52A1Q9NWF4 448 aa21.43■■□□□ 1.02
CCDC88B-210ENST00000494566 POGKQ9P215 609 aa21.42■■□□□ 1.02
CCDC88B-210ENST00000494566 U2AF1L5P0DN76 240 aaPredicted RBP21.42■■□□□ 1.02
CCDC88B-210ENST00000494566 U2AF1Q01081 240 aaKnown RBP eCLIP21.42■■□□□ 1.02
CCDC88B-210ENST00000494566 RUNDC1Q96C34 613 aa21.42■■□□□ 1.02
CCDC88B-210ENST00000494566 PANK1Q8TE04 598 aa21.41■■□□□ 1.02
CCDC88B-210ENST00000494566 A0A1W2PP64 1363 aa21.41■■□□□ 1.02
CCDC88B-210ENST00000494566 ANKRD36BQ8N2N9 1353 aa21.41■■□□□ 1.02
CCDC88B-210ENST00000494566 CANXP27824 592 aaKnown RBP21.4■■□□□ 1.02
CCDC88B-210ENST00000494566 ARHGAP31Q2M1Z3 1444 aa21.4■■□□□ 1.02
CCDC88B-210ENST00000494566 TNNQ9UQP3 1299 aa21.4■■□□□ 1.02
CCDC88B-210ENST00000494566 PREX1Q8TCU6 1659 aa21.39■■□□□ 1.01
CCDC88B-210ENST00000494566 ARXQ96QS3 562 aa21.39■■□□□ 1.01
CCDC88B-210ENST00000494566 COG6Q9Y2V7 657 aa21.39■■□□□ 1.01
CCDC88B-210ENST00000494566 U2SURPO15042 1029 aaKnown RBP21.38■■□□□ 1.01
CCDC88B-210ENST00000494566 MS4A1P11836 297 aa21.38■■□□□ 1.01
CCDC88B-210ENST00000494566 CFAP53Q96M91 514 aa21.38■■□□□ 1.01
CCDC88B-210ENST00000494566 FBLN1P23142 703 aa21.37■■□□□ 1.01
CCDC88B-210ENST00000494566 NFKBIBQ15653 356 aa21.37■■□□□ 1.01
CCDC88B-210ENST00000494566 CENPQQ7L2Z9 268 aaPredicted RBP21.37■■□□□ 1.01
CCDC88B-210ENST00000494566 TMEM131LA2VDJ0 1609 aa21.36■■□□□ 1.01
CCDC88B-210ENST00000494566 WAPLQ7Z5K2 1190 aa21.35■■□□□ 1.01
CCDC88B-210ENST00000494566 IGHDP01880 384 aa21.34■■□□□ 1.01
CCDC88B-210ENST00000494566 YTHDC2Q9H6S0 1430 aaKnown RBP21.33■■□□□ 1.01
CCDC88B-210ENST00000494566 PTPRMP28827 1452 aa21.33■■□□□ 1.01
CCDC88B-210ENST00000494566 CLUAP1Q96AJ1 413 aa21.33■■□□□ 1
CCDC88B-210ENST00000494566 FRAT2O75474 233 aaPredicted RBP21.32■■□□□ 1
CCDC88B-210ENST00000494566 CDK19Q9BWU1 502 aa21.32■■□□□ 1
CCDC88B-210ENST00000494566 CABP1Q9NZU7 370 aa21.32■■□□□ 1
CCDC88B-210ENST00000494566 FYB1O15117 783 aa21.32■■□□□ 1
CCDC88B-210ENST00000494566 C8orf34Q49A92 452 aa21.32■■□□□ 1
CCDC88B-210ENST00000494566 IQSEC2Q5JU85 1478 aa21.32■■□□□ 1
CCDC88B-210ENST00000494566 PPM1GO15355 546 aaPredicted RBP21.31■■□□□ 1
CCDC88B-210ENST00000494566 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.31■■□□□ 1
CCDC88B-210ENST00000494566 TSR2Q969E8 191 aaKnown RBP21.31■■□□□ 1
CCDC88B-210ENST00000494566 RARSP54136 660 aaKnown RBP21.3■■□□□ 1
CCDC88B-210ENST00000494566 SPRYD3Q8NCJ5 442 aa21.3■■□□□ 1
CCDC88B-210ENST00000494566 USP32Q8NFA0 1604 aa21.3■■□□□ 1
CCDC88B-210ENST00000494566 RLBP1P12271 317 aa21.29■■□□□ 1
CCDC88B-210ENST00000494566 ZFYVE9O95405 1425 aa21.29■■□□□ 1
CCDC88B-210ENST00000494566 ABCC11Q96J66 1382 aa21.29■■□□□ 1
CCDC88B-210ENST00000494566 RIMBP3CA6NJZ7 1639 aa21.28■■□□□ 1
CCDC88B-210ENST00000494566 RIMBP3BA6NNM3 1639 aa21.28■■□□□ 1
CCDC88B-210ENST00000494566 RIMBP3Q9UFD9 1639 aa21.28■■□□□ 1
CCDC88B-210ENST00000494566 FAM161AQ3B820 660 aa21.28■■□□□ 1
CCDC88B-210ENST00000494566 DDRGK1Q96HY6 314 aa21.28■■□□□ 1
CCDC88B-210ENST00000494566 SLKQ9H2G2 1235 aaPredicted RBP21.28■■□□□ 1
CCDC88B-210ENST00000494566 SEC24BO95487 1268 aa21.28■■□□□ 1
CCDC88B-210ENST00000494566 NGEFQ8N5V2 710 aa21.27■■□□□ 1
CCDC88B-210ENST00000494566 PHF23Q9BUL5 403 aaPredicted RBP21.27■■□□□ 1
CCDC88B-210ENST00000494566 ALKQ9UM73 1620 aa21.27■■□□□ 1
CCDC88B-210ENST00000494566 PUS7Q96PZ0 661 aaKnown RBP21.27■■□□□ 1
CCDC88B-210ENST00000494566 TERF2IPQ9NYB0 399 aa21.27■■□□□ 1
CCDC88B-210ENST00000494566 DIP2BQ9P265 1576 aa21.26■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms