RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 CLTCL1P53675 1640 aa12.62□□□□□ -0.39
USP39-216ENST00000490193 NUTM2BA6NNL0 878 aaPredicted RBP12.61□□□□□ -0.39
USP39-216ENST00000490193 NUTM2EB1AL46 878 aaPredicted RBP12.61□□□□□ -0.39
USP39-216ENST00000490193 NUTM2AQ8IVF1 878 aaPredicted RBP12.61□□□□□ -0.39
USP39-216ENST00000490193 RGS12O14924 1447 aa12.61□□□□□ -0.39
USP39-216ENST00000490193 KIF1BO60333 1816 aa12.6□□□□□ -0.39
USP39-216ENST00000490193 PRAG1Q86YV5 1406 aa12.6□□□□□ -0.39
USP39-216ENST00000490193 PTCH1Q13635 1447 aa12.59□□□□□ -0.39
USP39-216ENST00000490193 RBM6P78332 1123 aaKnown RBP12.58□□□□□ -0.4
USP39-216ENST00000490193 C1orf167Q5SNV9 1468 aa12.58□□□□□ -0.4
USP39-216ENST00000490193 AKT1S1Q96B36 256 aa12.57□□□□□ -0.4
USP39-216ENST00000490193 COL22A1Q8NFW1 1626 aaPredicted RBP12.57□□□□□ -0.4
USP39-216ENST00000490193 ZNF326Q5BKZ1 582 aaKnown RBP12.56□□□□□ -0.4
USP39-216ENST00000490193 C8orf37Q96NL8 207 aa12.56□□□□□ -0.4
USP39-216ENST00000490193 QTRT2Q9H974 415 aaKnown RBP12.56□□□□□ -0.4
USP39-216ENST00000490193 SP7Q8TDD2 431 aaPredicted RBP12.55□□□□□ -0.4
USP39-216ENST00000490193 SOS2Q07890 1332 aaPredicted RBP12.55□□□□□ -0.4
USP39-216ENST00000490193 DDX17Q92841 729 aaKnown RBP12.54□□□□□ -0.4
USP39-216ENST00000490193 NGLY1Q96IV0 654 aa12.53□□□□□ -0.4
USP39-216ENST00000490193 MARF1Q9Y4F3 1742 aaKnown RBP12.53□□□□□ -0.4
USP39-216ENST00000490193 PPLO60437 1756 aa12.53□□□□□ -0.4
USP39-216ENST00000490193 ATAD2Q6PL18 1390 aa12.52□□□□□ -0.41
USP39-216ENST00000490193 ROBO2Q9HCK4 1378 aa12.52□□□□□ -0.41
USP39-216ENST00000490193 EP400Q96L91 3159 aa12.52□□□□□ -0.41
USP39-216ENST00000490193 CDC42BPGQ6DT37 1551 aa12.52□□□□□ -0.41
USP39-216ENST00000490193 ITGAEP38570 1179 aa12.51□□□□□ -0.41
USP39-216ENST00000490193 FNBP4Q8N3X1 1017 aaPredicted RBP12.51□□□□□ -0.41
USP39-216ENST00000490193 HFM1A2PYH4 1435 aa12.51□□□□□ -0.41
USP39-216ENST00000490193 ATRNO75882 1429 aa12.51□□□□□ -0.41
USP39-216ENST00000490193 MYOM2P54296 1465 aa12.51□□□□□ -0.41
USP39-216ENST00000490193 VGFO15240 615 aaPredicted RBP12.5□□□□□ -0.41
USP39-216ENST00000490193 NAIPQ13075 1403 aa12.5□□□□□ -0.41
USP39-216ENST00000490193 RPGRIP1LQ68CZ1 1315 aa12.49□□□□□ -0.41
USP39-216ENST00000490193 ADAMTS2O95450 1211 aa12.49□□□□□ -0.41
USP39-216ENST00000490193 ORAI2Q96SN7 254 aa12.49□□□□□ -0.41
USP39-216ENST00000490193 TRPC5Q9UL62 973 aaPredicted RBP12.49□□□□□ -0.41
USP39-216ENST00000490193 ZBTB12Q9Y330 459 aaPredicted RBP12.49□□□□□ -0.41
USP39-216ENST00000490193 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.48□□□□□ -0.41
USP39-216ENST00000490193 PXDNQ92626 1479 aa12.48□□□□□ -0.41
USP39-216ENST00000490193 USP21Q9UK80 565 aa12.48□□□□□ -0.41
USP39-216ENST00000490193 RRBP1Q9P2E9 1410 aaKnown RBP12.47□□□□□ -0.41
USP39-216ENST00000490193 BCL9LQ86UU0 1499 aa12.46□□□□□ -0.42
USP39-216ENST00000490193 KNDC1Q76NI1 1749 aa12.45□□□□□ -0.42
USP39-216ENST00000490193 NPHP3Q7Z494 1330 aa12.45□□□□□ -0.42
USP39-216ENST00000490193 IFT172Q9UG01 1749 aa12.45□□□□□ -0.42
USP39-216ENST00000490193 TECPR2O15040 1411 aa12.45□□□□□ -0.42
USP39-216ENST00000490193 CCDC125Q86Z20 511 aa12.44□□□□□ -0.42
USP39-216ENST00000490193 FMN2Q9NZ56 1722 aa12.42□□□□□ -0.42
USP39-216ENST00000490193 KIF1AQ12756 1690 aa12.42□□□□□ -0.42
USP39-216ENST00000490193 LRPPRCP42704 1394 aaKnown RBP12.42□□□□□ -0.42
USP39-216ENST00000490193 GLI3P10071 1580 aa12.41□□□□□ -0.42
USP39-216ENST00000490193 ESCO1Q5FWF5 840 aa12.41□□□□□ -0.42
USP39-216ENST00000490193 REM2Q8IYK8 340 aaPredicted RBP12.41□□□□□ -0.42
USP39-216ENST00000490193 ZRANB1Q9UGI0 708 aa12.41□□□□□ -0.42
USP39-216ENST00000490193 SLIT2O94813 1529 aa12.41□□□□□ -0.42
USP39-216ENST00000490193 GJD4Q96KN9 370 aaPredicted RBP12.4□□□□□ -0.42
USP39-216ENST00000490193 USP32Q8NFA0 1604 aa12.4□□□□□ -0.42
USP39-216ENST00000490193 BRWD3Q6RI45 1802 aa12.39□□□□□ -0.43
USP39-216ENST00000490193 FOXO3O43524 673 aa12.39□□□□□ -0.43
USP39-216ENST00000490193 ABCC11Q96J66 1382 aa12.39□□□□□ -0.43
USP39-216ENST00000490193 CCDC144AA2RUR9 1427 aa12.38□□□□□ -0.43
USP39-216ENST00000490193 SPATA31E1Q6ZUB1 1445 aa12.38□□□□□ -0.43
USP39-216ENST00000490193 NWD2Q9ULI1 1742 aa12.38□□□□□ -0.43
USP39-216ENST00000490193 PIP4P2Q8N4L2 257 aa12.38□□□□□ -0.43
USP39-216ENST00000490193 SLC4A1APQ9BWU0 796 aaKnown RBP12.38□□□□□ -0.43
USP39-216ENST00000490193 RALGAPBQ86X10 1494 aa12.38□□□□□ -0.43
USP39-216ENST00000490193 ADGRF5Q8IZF2 1346 aa12.37□□□□□ -0.43
USP39-216ENST00000490193 BLMP54132 1417 aaPredicted RBP12.37□□□□□ -0.43
USP39-216ENST00000490193 LRP5O75197 1615 aa12.37□□□□□ -0.43
USP39-216ENST00000490193 PPARGC1BQ86YN6 1023 aaKnown RBP12.37□□□□□ -0.43
USP39-216ENST00000490193 ANKRD30BQ9BXX2 1392 aa12.37□□□□□ -0.43
USP39-216ENST00000490193 ABCA3Q99758 1704 aa12.37□□□□□ -0.43
USP39-216ENST00000490193 PIK3C2GO75747 1445 aa12.37□□□□□ -0.43
USP39-216ENST00000490193 SPATA31A3Q5VYP0 1347 aa12.37□□□□□ -0.43
USP39-216ENST00000490193 PLCH1Q4KWH8 1693 aa12.36□□□□□ -0.43
USP39-216ENST00000490193 UNC5CLQ8IV45 518 aa12.36□□□□□ -0.43
USP39-216ENST00000490193 RGPD8O14715 1765 aaPredicted RBP12.35□□□□□ -0.43
USP39-216ENST00000490193 XPCQ01831 940 aaPredicted RBP12.35□□□□□ -0.43
USP39-216ENST00000490193 PLEKHH1Q9ULM0 1364 aa12.34□□□□□ -0.43
USP39-216ENST00000490193 WAPLQ7Z5K2 1190 aa12.34□□□□□ -0.43
USP39-216ENST00000490193 SIRT1Q96EB6 747 aa12.34□□□□□ -0.43
USP39-216ENST00000490193 ATF5Q9Y2D1 282 aaPredicted RBP12.34□□□□□ -0.43
USP39-216ENST00000490193 YTHDC2Q9H6S0 1430 aaKnown RBP12.34□□□□□ -0.43
USP39-216ENST00000490193 TNS3Q68CZ2 1445 aa12.33□□□□□ -0.44
USP39-216ENST00000490193 STK26Q9P289 416 aa12.32□□□□□ -0.44
USP39-216ENST00000490193 NRXN1Q9ULB1 1477 aa12.32□□□□□ -0.44
USP39-216ENST00000490193 NUTM2FA1L443 756 aa12.31□□□□□ -0.44
USP39-216ENST00000490193 ONECUT3O60422 494 aaPredicted RBP12.31□□□□□ -0.44
USP39-216ENST00000490193 VPS72Q15906 364 aa12.31□□□□□ -0.44
USP39-216ENST00000490193 KRT28Q7Z3Y7 464 aa12.31□□□□□ -0.44
USP39-216ENST00000490193 NRAPQ86VF7 1730 aa12.31□□□□□ -0.44
USP39-216ENST00000490193 SBNO1A3KN83 1393 aa12.3□□□□□ -0.44
USP39-216ENST00000490193 FXR2P51116 673 aaKnown RBP eCLIP12.3□□□□□ -0.44
USP39-216ENST00000490193 TMEM132EQ6IEE7 984 aa12.3□□□□□ -0.44
USP39-216ENST00000490193 TRPM3Q9HCF6 1732 aaPredicted RBP12.29□□□□□ -0.44
USP39-216ENST00000490193 RGL3Q3MIN7 710 aa12.29□□□□□ -0.44
USP39-216ENST00000490193 ADGRB2O60241 1585 aa12.29□□□□□ -0.44
USP39-216ENST00000490193 ARHGEF10O15013 1369 aa12.29□□□□□ -0.44
USP39-216ENST00000490193 DLC1Q96QB1 1528 aa12.28□□□□□ -0.44
USP39-216ENST00000490193 PSME1Q06323 249 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms