RNA–Protein interactions for RNA: ENST00000489853.1

SNRNP40-206, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 1,928 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-206ENST00000489853 GRXCR2A6NFK2 248 aa6.09□□□□□ -1.43
SNRNP40-206ENST00000489853 CANXP27824 592 aaKnown RBP6.09□□□□□ -1.43
SNRNP40-206ENST00000489853 KIAA1211Q6ZU35 1233 aa6.09□□□□□ -1.43
SNRNP40-206ENST00000489853 OFD1O75665 1012 aa6.09□□□□□ -1.44
SNRNP40-206ENST00000489853 HOXB1P14653 301 aaPredicted RBP6.09□□□□□ -1.44
SNRNP40-206ENST00000489853 GTF2E1P29083 439 aaPredicted RBP6.09□□□□□ -1.44
SNRNP40-206ENST00000489853 TMEM92Q6UXU6 159 aa6.09□□□□□ -1.44
SNRNP40-206ENST00000489853 CENPQQ7L2Z9 268 aaPredicted RBP6.09□□□□□ -1.44
SNRNP40-206ENST00000489853 IPO4Q8TEX9 1081 aaKnown RBP6.09□□□□□ -1.44
SNRNP40-206ENST00000489853 TRIM44Q96DX7 344 aaPredicted RBP6.09□□□□□ -1.44
SNRNP40-206ENST00000489853 STAC3Q96MF2 364 aa6.09□□□□□ -1.44
SNRNP40-206ENST00000489853 KTN1Q86UP2 1357 aaKnown RBP6.09□□□□□ -1.44
SNRNP40-206ENST00000489853 UACAQ9BZF9 1416 aa6.09□□□□□ -1.44
SNRNP40-206ENST00000489853 PRXQ9BXM0 1461 aa6.09□□□□□ -1.44
SNRNP40-206ENST00000489853 NUTM2FA1L443 756 aa6.08□□□□□ -1.44
SNRNP40-206ENST00000489853 CNGB1Q14028 1251 aaPredicted RBP6.08□□□□□ -1.44
SNRNP40-206ENST00000489853 KDM2BQ8NHM5 1336 aa6.08□□□□□ -1.44
SNRNP40-206ENST00000489853 PANK2Q9BZ23 570 aa6.08□□□□□ -1.44
SNRNP40-206ENST00000489853 PHLDB1Q86UU1 1377 aa6.07□□□□□ -1.44
SNRNP40-206ENST00000489853 ERBB4Q15303 1308 aa6.07□□□□□ -1.44
SNRNP40-206ENST00000489853 TNNT2P45379 298 aaPredicted RBP6.07□□□□□ -1.44
SNRNP40-206ENST00000489853 RIPK4P57078 832 aa6.07□□□□□ -1.44
SNRNP40-206ENST00000489853 DMTNQ08495 405 aa6.07□□□□□ -1.44
SNRNP40-206ENST00000489853 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.07□□□□□ -1.44
SNRNP40-206ENST00000489853 MICALL2Q8IY33 904 aa6.07□□□□□ -1.44
SNRNP40-206ENST00000489853 ZNF710Q8N1W2 664 aa6.07□□□□□ -1.44
SNRNP40-206ENST00000489853 CLUAP1Q96AJ1 413 aa6.07□□□□□ -1.44
SNRNP40-206ENST00000489853 ANTXR1Q9H6X2 564 aa6.07□□□□□ -1.44
SNRNP40-206ENST00000489853 MCM4P33991 863 aa6.07□□□□□ -1.44
SNRNP40-206ENST00000489853 DOK7Q18PE1 504 aa6.07□□□□□ -1.44
SNRNP40-206ENST00000489853 GRPEL1Q9HAV7 217 aa6.07□□□□□ -1.44
SNRNP40-206ENST00000489853 LRPPRCP42704 1394 aaKnown RBP6.06□□□□□ -1.44
SNRNP40-206ENST00000489853 KIF7Q2M1P5 1343 aa6.06□□□□□ -1.44
SNRNP40-206ENST00000489853 TMC1Q8TDI8 760 aa6.06□□□□□ -1.44
SNRNP40-206ENST00000489853 ABCA5Q8WWZ7 1642 aa6.06□□□□□ -1.44
SNRNP40-206ENST00000489853 AQRO60306 1485 aaKnown RBP eCLIP6.06□□□□□ -1.441e-7■■□□□ 13.2
SNRNP40-206ENST00000489853 LRRC9Q6ZRR7 1453 aa6.06□□□□□ -1.44
SNRNP40-206ENST00000489853 KIF20AO95235 890 aa6.05□□□□□ -1.44
SNRNP40-206ENST00000489853 RSPH4AQ5TD94 716 aa6.05□□□□□ -1.44
SNRNP40-206ENST00000489853 CRBNQ96SW2 442 aa6.05□□□□□ -1.44
SNRNP40-206ENST00000489853 GTPBP4Q9BZE4 634 aaKnown RBP6.05□□□□□ -1.44
SNRNP40-206ENST00000489853 TIAM1Q13009 1591 aa6.05□□□□□ -1.44
SNRNP40-206ENST00000489853 DHX29Q7Z478 1369 aaKnown RBP6.05□□□□□ -1.44
SNRNP40-206ENST00000489853 ERBB3P21860 1342 aa6.05□□□□□ -1.44
SNRNP40-206ENST00000489853 ARID4BQ4LE39 1312 aaPredicted RBP6.05□□□□□ -1.44
SNRNP40-206ENST00000489853 IRF6O14896 467 aa6.05□□□□□ -1.44
SNRNP40-206ENST00000489853 TRAK2O60296 914 aa6.05□□□□□ -1.44
SNRNP40-206ENST00000489853 ONECUT3O60422 494 aaPredicted RBP6.05□□□□□ -1.44
SNRNP40-206ENST00000489853 PRIM1P49642 420 aaKnown RBP6.05□□□□□ -1.44
SNRNP40-206ENST00000489853 MAP2K5Q13163 448 aa6.05□□□□□ -1.44
SNRNP40-206ENST00000489853 FAM13BQ9NYF5 915 aa6.05□□□□□ -1.44
SNRNP40-206ENST00000489853 ARHGAP35Q9NRY4 1499 aa6.05□□□□□ -1.44
SNRNP40-206ENST00000489853 MYOM3Q5VTT5 1437 aa6.04□□□□□ -1.44
SNRNP40-206ENST00000489853 TOPBP1Q92547 1522 aa6.04□□□□□ -1.44
SNRNP40-206ENST00000489853 DYNC1I1O14576 645 aa6.04□□□□□ -1.44
SNRNP40-206ENST00000489853 TAF3Q5VWG9 929 aa6.04□□□□□ -1.44
SNRNP40-206ENST00000489853 ZSCAN30Q86W11 494 aa6.04□□□□□ -1.44
SNRNP40-206ENST00000489853 SKAP1Q86WV1 359 aa6.04□□□□□ -1.44
SNRNP40-206ENST00000489853 ZHX1Q9UKY1 873 aaPredicted RBP6.04□□□□□ -1.44
SNRNP40-206ENST00000489853 IFT140Q96RY7 1462 aa6.04□□□□□ -1.44
SNRNP40-206ENST00000489853 USP19O94966 1318 aa6.04□□□□□ -1.44
SNRNP40-206ENST00000489853 MINK1Q8N4C8 1332 aaPredicted RBP6.04□□□□□ -1.44
SNRNP40-206ENST00000489853 CCDC18Q5T9S5 1454 aa6.03□□□□□ -1.44
SNRNP40-206ENST00000489853 SPDYE16A6NNV3 312 aaPredicted RBP6.03□□□□□ -1.44
SNRNP40-206ENST00000489853 AMHR2Q16671 573 aa6.03□□□□□ -1.44
SNRNP40-206ENST00000489853 PPP4R3BQ5MIZ7 849 aa6.03□□□□□ -1.44
SNRNP40-206ENST00000489853 CCDC82Q8N4S0 544 aa6.03□□□□□ -1.44
SNRNP40-206ENST00000489853 UPF1Q92900 1129 aaKnown RBP eCLIP6.03□□□□□ -1.44
SNRNP40-206ENST00000489853 REPIN1Q9BWE0 567 aaKnown RBP6.03□□□□□ -1.44
SNRNP40-206ENST00000489853 CHMP4BQ9H444 224 aaKnown RBP6.03□□□□□ -1.44
SNRNP40-206ENST00000489853 EIF4G3O43432 1585 aaKnown RBP6.03□□□□□ -1.44
SNRNP40-206ENST00000489853 BRD4O60885 1362 aaPredicted RBP6.03□□□□□ -1.44
SNRNP40-206ENST00000489853 TARBP1Q13395 1621 aaKnown RBP6.03□□□□□ -1.44
SNRNP40-206ENST00000489853 OSBPP22059 807 aa6.03□□□□□ -1.44
SNRNP40-206ENST00000489853 TTLL12Q14166 644 aaPredicted RBP6.03□□□□□ -1.44
SNRNP40-206ENST00000489853 VARS2Q5ST30 1063 aaKnown RBP6.03□□□□□ -1.44
SNRNP40-206ENST00000489853 DDX12PQ92771 950 aa6.03□□□□□ -1.44
SNRNP40-206ENST00000489853 PPP1R9BQ96SB3 815 aa6.03□□□□□ -1.44
SNRNP40-206ENST00000489853 CCDC94Q9BW85 323 aaPredicted RBP6.03□□□□□ -1.44
SNRNP40-206ENST00000489853 GZF1Q9H116 711 aaPredicted RBP6.03□□□□□ -1.44
SNRNP40-206ENST00000489853 SLKQ9H2G2 1235 aaPredicted RBP6.03□□□□□ -1.44
SNRNP40-206ENST00000489853 TMEM51Q9NW97 253 aa6.03□□□□□ -1.44
SNRNP40-206ENST00000489853 HFM1A2PYH4 1435 aa6.03□□□□□ -1.44
SNRNP40-206ENST00000489853 SPATA31E1Q6ZUB1 1445 aa6.03□□□□□ -1.44
SNRNP40-206ENST00000489853 CHD1O14646 1710 aa6.03□□□□□ -1.44
SNRNP40-206ENST00000489853 LETM1O95202 739 aaPredicted RBP6.02□□□□□ -1.45
SNRNP40-206ENST00000489853 ZSCAN20P17040 1043 aaPredicted RBP6.02□□□□□ -1.45
SNRNP40-206ENST00000489853 CCDC173Q0VFZ6 552 aa6.02□□□□□ -1.45
SNRNP40-206ENST00000489853 HS1BP3Q53T59 392 aa6.02□□□□□ -1.45
SNRNP40-206ENST00000489853 PLPP6Q8IY26 295 aa6.02□□□□□ -1.45
SNRNP40-206ENST00000489853 DDX11L8A8MPP1 907 aa6.01□□□□□ -1.45
SNRNP40-206ENST00000489853 RIMBP2O15034 1052 aa6.01□□□□□ -1.45
SNRNP40-206ENST00000489853 PLIN1O60240 522 aa6.01□□□□□ -1.45
SNRNP40-206ENST00000489853 FOXK1P85037 733 aa6.01□□□□□ -1.45
SNRNP40-206ENST00000489853 NECTIN2Q92692 538 aa6.01□□□□□ -1.45
SNRNP40-206ENST00000489853 CHMP5Q9NZZ3 219 aa6.01□□□□□ -1.45
SNRNP40-206ENST00000489853 C2orf72A6NCS6 295 aa6.01□□□□□ -1.45
SNRNP40-206ENST00000489853 GNPATO15228 680 aa6.01□□□□□ -1.45
SNRNP40-206ENST00000489853 MSNP26038 577 aaKnown RBP6.01□□□□□ -1.45
SNRNP40-206ENST00000489853 RALBP1Q15311 655 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms