RNA–Protein interactions for RNA: ENST00000487997.1

PTBP3-208, Transcript of polypyrimidine tract binding protein 3, human

TSL 3

Gene PTBP3, Length 389 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTBP3-208	ENST00000487997	LRRC7	Q96NW7	1537 aa		13.86	□□□□□ -0.19
PTBP3-208	ENST00000487997	ILDR1	Q86SU0	546 aa	Predicted RBP	13.86	□□□□□ -0.19
PTBP3-208	ENST00000487997	PROSER2	Q86WR7	435 aa	Predicted RBP	13.86	□□□□□ -0.19
PTBP3-208	ENST00000487997	ZNF579	Q8NAF0	562 aa	Known RBP	13.86	□□□□□ -0.19
PTBP3-208	ENST00000487997	NKTR	P30414	1462 aa	Known RBP	13.86	□□□□□ -0.19
PTBP3-208	ENST00000487997	ALK	Q9UM73	1620 aa		13.84	□□□□□ -0.19
PTBP3-208	ENST00000487997	UBAP1L	F5GYI3	381 aa		13.84	□□□□□ -0.19
PTBP3-208	ENST00000487997	SETD1A	O15047	1707 aa	Known RBP	13.84	□□□□□ -0.19
PTBP3-208	ENST00000487997	TOM1	O60784	492 aa		13.83	□□□□□ -0.2
PTBP3-208	ENST00000487997	AMOTL2	Q9Y2J4	779 aa		13.82	□□□□□ -0.2
PTBP3-208	ENST00000487997	LAMC1	P11047	1609 aa		13.82	□□□□□ -0.2
PTBP3-208	ENST00000487997	C14orf37	Q86TY3	774 aa		13.81	□□□□□ -0.2
PTBP3-208	ENST00000487997	MIER1	Q8N108	512 aa		13.81	□□□□□ -0.2
PTBP3-208	ENST00000487997	ADGRF5	Q8IZF2	1346 aa		13.81	□□□□□ -0.2
PTBP3-208	ENST00000487997	XRN1	Q8IZH2	1706 aa	Known RBP	13.81	□□□□□ -0.2
PTBP3-208	ENST00000487997	MYOM2	P54296	1465 aa		13.8	□□□□□ -0.2
PTBP3-208	ENST00000487997	DCAF11	Q8TEB1	546 aa		13.8	□□□□□ -0.2
PTBP3-208	ENST00000487997	PCGF6	Q9BYE7	350 aa		13.8	□□□□□ -0.2
PTBP3-208	ENST00000487997	KDM2A	Q9Y2K7	1162 aa		13.8	□□□□□ -0.2
PTBP3-208	ENST00000487997	MET	P08581	1390 aa		13.8	□□□□□ -0.2
PTBP3-208	ENST00000487997	TMEM94	Q12767	1356 aa		13.8	□□□□□ -0.2
PTBP3-208	ENST00000487997	RBM33	Q96EV2	1170 aa	Known RBP	13.79	□□□□□ -0.2
PTBP3-208	ENST00000487997	STAC3	Q96MF2	364 aa		13.79	□□□□□ -0.2
PTBP3-208	ENST00000487997	DHX57	Q6P158	1386 aa	Known RBP	13.79	□□□□□ -0.2
PTBP3-208	ENST00000487997	MSH6	P52701	1360 aa		13.78	□□□□□ -0.2
PTBP3-208	ENST00000487997	PIK3C2G	O75747	1445 aa		13.78	□□□□□ -0.2
PTBP3-208	ENST00000487997	PTPRU	Q92729	1446 aa		13.78	□□□□□ -0.2
PTBP3-208	ENST00000487997	PIP4K2B	P78356	416 aa		13.77	□□□□□ -0.21
PTBP3-208	ENST00000487997	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	13.76	□□□□□ -0.21
PTBP3-208	ENST00000487997	NCOA3	Q9Y6Q9	1424 aa		13.76	□□□□□ -0.21
PTBP3-208	ENST00000487997	PAK3	O75914	559 aa	Predicted RBP	13.76	□□□□□ -0.21
PTBP3-208	ENST00000487997	NEUROD1	Q13562	356 aa		13.76	□□□□□ -0.21
PTBP3-208	ENST00000487997	NRXN1	Q9ULB1	1477 aa		13.75	□□□□□ -0.21
PTBP3-208	ENST00000487997	CLCN6	P51797	869 aa		13.75	□□□□□ -0.21
PTBP3-208	ENST00000487997	PHF12	Q96QT6	1004 aa		13.75	□□□□□ -0.21
PTBP3-208	ENST00000487997	KNDC1	Q76NI1	1749 aa		13.75	□□□□□ -0.21
PTBP3-208	ENST00000487997	POTEI	P0CG38	1075 aa		13.74	□□□□□ -0.21
PTBP3-208	ENST00000487997	SIN3A	Q96ST3	1273 aa		13.74	□□□□□ -0.21
PTBP3-208	ENST00000487997	C14orf93	Q9H972	538 aa	Known RBP	13.74	□□□□□ -0.21
PTBP3-208	ENST00000487997	ATF3	P18847	181 aa		13.73	□□□□□ -0.21
PTBP3-208	ENST00000487997	CFAP70	Q5T0N1	1121 aa		13.73	□□□□□ -0.21
PTBP3-208	ENST00000487997	STK26	Q9P289	416 aa		13.73	□□□□□ -0.21
PTBP3-208	ENST00000487997	PLEKHG5	O94827	1062 aa		13.72	□□□□□ -0.21
PTBP3-208	ENST00000487997	TMEM132E	Q6IEE7	984 aa		13.72	□□□□□ -0.21
PTBP3-208	ENST00000487997	PLCD3	Q8N3E9	789 aa		13.72	□□□□□ -0.21
PTBP3-208	ENST00000487997	C19orf44	Q9H6X5	657 aa		13.72	□□□□□ -0.21
PTBP3-208	ENST00000487997	NALCN	Q8IZF0	1738 aa		13.72	□□□□□ -0.21
PTBP3-208	ENST00000487997	KIAA1210	Q9ULL0	1709 aa		13.72	□□□□□ -0.21
PTBP3-208	ENST00000487997	PTCH1	Q13635	1447 aa		13.72	□□□□□ -0.21
PTBP3-208	ENST00000487997	CADPS2	Q86UW7	1296 aa		13.71	□□□□□ -0.21
PTBP3-208	ENST00000487997	LRPPRC	P42704	1394 aa	Known RBP	13.71	□□□□□ -0.22
PTBP3-208	ENST00000487997	GALR2	O43603	387 aa	Predicted RBP	13.7	□□□□□ -0.22
PTBP3-208	ENST00000487997	YTHDC2	Q9H6S0	1430 aa	Known RBP	13.7	□□□□□ -0.22
PTBP3-208	ENST00000487997	ASXL1	Q8IXJ9	1541 aa		13.69	□□□□□ -0.22
PTBP3-208	ENST00000487997	ROBO1	Q9Y6N7	1651 aa		13.69	□□□□□ -0.22
PTBP3-208	ENST00000487997	ROBO2	Q9HCK4	1378 aa		13.69	□□□□□ -0.22
PTBP3-208	ENST00000487997	PRAG1	Q86YV5	1406 aa		13.68	□□□□□ -0.22
PTBP3-208	ENST00000487997	L3MBTL2	Q969R5	705 aa		13.68	□□□□□ -0.22
PTBP3-208	ENST00000487997	TSPYL2	Q9H2G4	693 aa	Predicted RBP	13.68	□□□□□ -0.22
PTBP3-208	ENST00000487997	SLAIN2	Q9P270	581 aa		13.68	□□□□□ -0.22
PTBP3-208	ENST00000487997	ABCC11	Q96J66	1382 aa		13.68	□□□□□ -0.22
PTBP3-208	ENST00000487997	TECPR2	O15040	1411 aa		13.67	□□□□□ -0.22
PTBP3-208	ENST00000487997	DCC	P43146	1447 aa		13.67	□□□□□ -0.22
PTBP3-208	ENST00000487997	ADGRL3	Q9HAR2	1447 aa		13.67	□□□□□ -0.22
PTBP3-208	ENST00000487997	TONSL	Q96HA7	1378 aa		13.67	□□□□□ -0.22
PTBP3-208	ENST00000487997	WAPL	Q7Z5K2	1190 aa		13.65	□□□□□ -0.22
PTBP3-208	ENST00000487997	RASEF	Q8IZ41	740 aa		13.65	□□□□□ -0.22
PTBP3-208	ENST00000487997	SIRT1	Q96EB6	747 aa		13.65	□□□□□ -0.22
PTBP3-208	ENST00000487997	POGK	Q9P215	609 aa		13.65	□□□□□ -0.22
PTBP3-208	ENST00000487997	ADGRB1	O14514	1584 aa		13.65	□□□□□ -0.22
PTBP3-208	ENST00000487997	FAM135B	Q49AJ0	1406 aa		13.64	□□□□□ -0.23
PTBP3-208	ENST00000487997	PHLPP1	O60346	1717 aa		13.64	□□□□□ -0.23
PTBP3-208	ENST00000487997	TRAK1	Q9UPV9	953 aa		13.64	□□□□□ -0.23
PTBP3-208	ENST00000487997	ARHGEF28	Q8N1W1	1705 aa	Known RBP	13.64	□□□□□ -0.23
PTBP3-208	ENST00000487997	DLC1	Q96QB1	1528 aa		13.64	□□□□□ -0.23
PTBP3-208	ENST00000487997	HSPA1L	P34931	641 aa		13.63	□□□□□ -0.23
PTBP3-208	ENST00000487997	TRPM1	Q7Z4N2	1603 aa		13.63	□□□□□ -0.23
PTBP3-208	ENST00000487997	CCER1	Q8TC90	406 aa	Predicted RBP	13.62	□□□□□ -0.23
PTBP3-208	ENST00000487997	PRAM1	Q96QH2	718 aa		13.62	□□□□□ -0.23
PTBP3-208	ENST00000487997	FBXO3	Q9UK99	471 aa		13.62	□□□□□ -0.23
PTBP3-208	ENST00000487997	CCDC61	Q9Y6R9	512 aa		13.62	□□□□□ -0.23
PTBP3-208	ENST00000487997	CDC42BPG	Q6DT37	1551 aa		13.62	□□□□□ -0.23
PTBP3-208	ENST00000487997	CLSPN	Q9HAW4	1339 aa		13.62	□□□□□ -0.23
PTBP3-208	ENST00000487997	RGPD8	O14715	1765 aa	Predicted RBP	13.61	□□□□□ -0.23
PTBP3-208	ENST00000487997	SAFB2	Q14151	953 aa	Known RBP eCLIP	13.61	□□□□□ -0.23
PTBP3-208	ENST00000487997	DCBLD2	Q96PD2	775 aa		13.61	□□□□□ -0.23
PTBP3-208	ENST00000487997	PLEKHH1	Q9ULM0	1364 aa		13.6	□□□□□ -0.23
PTBP3-208	ENST00000487997	MST1R	Q04912	1400 aa		13.6	□□□□□ -0.23
PTBP3-208	ENST00000487997	FMN2	Q9NZ56	1722 aa		13.6	□□□□□ -0.23
PTBP3-208	ENST00000487997	NBPF1	Q3BBV0	1214 aa		13.58	□□□□□ -0.24
PTBP3-208	ENST00000487997	ROCK2	O75116	1388 aa	Known RBP	13.58	□□□□□ -0.24
PTBP3-208	ENST00000487997	NUBP1	P53384	320 aa		13.57	□□□□□ -0.24
PTBP3-208	ENST00000487997	BRINP3	Q76B58	766 aa		13.57	□□□□□ -0.24
PTBP3-208	ENST00000487997	MS4A3	Q96HJ5	214 aa		13.57	□□□□□ -0.24
PTBP3-208	ENST00000487997	NHSL1	Q5SYE7	1610 aa		13.57	□□□□□ -0.24
PTBP3-208	ENST00000487997	C1orf167	Q5SNV9	1468 aa		13.56	□□□□□ -0.24
PTBP3-208	ENST00000487997	ZBTB47	Q9UFB7	747 aa	Predicted RBP	13.56	□□□□□ -0.24
PTBP3-208	ENST00000487997	MINK1	Q8N4C8	1332 aa	Predicted RBP	13.56	□□□□□ -0.24
PTBP3-208	ENST00000487997	AHDC1	Q5TGY3	1603 aa	Predicted RBP	13.56	□□□□□ -0.24
PTBP3-208	ENST00000487997	QRICH2	Q9H0J4	1663 aa		13.56	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms