RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 PODXL2Q9NZ53 605 aa10.86□□□□□ -0.67
USP4-211ENST00000485450 SBNO2Q9Y2G9 1366 aa10.85□□□□□ -0.67
USP4-211ENST00000485450 MON2Q7Z3U7 1717 aa10.85□□□□□ -0.67
USP4-211ENST00000485450 ALS2Q96Q42 1657 aa10.84□□□□□ -0.67
USP4-211ENST00000485450 COL16A1Q07092 1604 aaPredicted RBP10.84□□□□□ -0.67
USP4-211ENST00000485450 MED1Q15648 1581 aaPredicted RBP10.84□□□□□ -0.67
USP4-211ENST00000485450 C14orf93Q9H972 538 aaKnown RBP10.84□□□□□ -0.67
USP4-211ENST00000485450 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.83□□□□□ -0.68
USP4-211ENST00000485450 ADGRL3Q9HAR2 1447 aa10.83□□□□□ -0.68
USP4-211ENST00000485450 METP08581 1390 aa10.83□□□□□ -0.68
USP4-211ENST00000485450 RBM19Q9Y4C8 960 aaKnown RBP10.83□□□□□ -0.68
USP4-211ENST00000485450 DEKP35659 375 aaKnown RBP10.83□□□□□ -0.68
USP4-211ENST00000485450 YTHDC2Q9H6S0 1430 aaKnown RBP10.83□□□□□ -0.68
USP4-211ENST00000485450 ROBO1Q9Y6N7 1651 aa10.82□□□□□ -0.68
USP4-211ENST00000485450 HDGFP51858 240 aaKnown RBP10.82□□□□□ -0.68
USP4-211ENST00000485450 ERICH6BQ5W0A0 696 aa10.82□□□□□ -0.68
USP4-211ENST00000485450 NCKAP5LQ9HCH0 1330 aa10.82□□□□□ -0.68
USP4-211ENST00000485450 KCNA6P17658 529 aa10.81□□□□□ -0.68
USP4-211ENST00000485450 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.81□□□□□ -0.68
USP4-211ENST00000485450 PHRF1Q9P1Y6 1649 aaKnown RBP10.81□□□□□ -0.68
USP4-211ENST00000485450 ITGAEP38570 1179 aa10.81□□□□□ -0.68
USP4-211ENST00000485450 RGPD8O14715 1765 aaPredicted RBP10.81□□□□□ -0.68
USP4-211ENST00000485450 ANKARQ7Z5J8 1434 aa10.8□□□□□ -0.68
USP4-211ENST00000485450 TULP4Q9NRJ4 1543 aa10.8□□□□□ -0.68
USP4-211ENST00000485450 VGFO15240 615 aaPredicted RBP10.8□□□□□ -0.68
USP4-211ENST00000485450 PHF23Q9BUL5 403 aaPredicted RBP10.8□□□□□ -0.68
USP4-211ENST00000485450 ADGRF5Q8IZF2 1346 aa10.78□□□□□ -0.68
USP4-211ENST00000485450 ANKRD26Q9UPS8 1709 aa10.78□□□□□ -0.68
USP4-211ENST00000485450 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.77□□□□□ -0.69
USP4-211ENST00000485450 EID1Q9Y6B2 187 aa10.77□□□□□ -0.69
USP4-211ENST00000485450 HSPA2P54652 639 aa10.76□□□□□ -0.69
USP4-211ENST00000485450 TXNDC2Q86VQ3 553 aa10.76□□□□□ -0.69
USP4-211ENST00000485450 ROBO2Q9HCK4 1378 aa10.76□□□□□ -0.69
USP4-211ENST00000485450 TRIM52Q96A61 297 aa10.75□□□□□ -0.69
USP4-211ENST00000485450 FOXD1Q16676 465 aa10.75□□□□□ -0.69
USP4-211ENST00000485450 PHLPP1O60346 1717 aa10.74□□□□□ -0.69
USP4-211ENST00000485450 ABCC6O95255 1503 aa10.74□□□□□ -0.69
USP4-211ENST00000485450 ATP7BP35670 1465 aa10.74□□□□□ -0.69
USP4-211ENST00000485450 PXDNQ92626 1479 aa10.74□□□□□ -0.69
USP4-211ENST00000485450 PUS7Q96PZ0 661 aaKnown RBP10.73□□□□□ -0.69
USP4-211ENST00000485450 IL27Q8NEV9 243 aa10.72□□□□□ -0.69
USP4-211ENST00000485450 ARXQ96QS3 562 aa10.72□□□□□ -0.69
USP4-211ENST00000485450 ZNF335Q9H4Z2 1342 aaPredicted RBP10.71□□□□□ -0.69
USP4-211ENST00000485450 BRD4O60885 1362 aaPredicted RBP10.7□□□□□ -0.7
USP4-211ENST00000485450 SSH2Q76I76 1423 aa10.7□□□□□ -0.7
USP4-211ENST00000485450 WNK3Q9BYP7 1800 aa10.7□□□□□ -0.7
USP4-211ENST00000485450 NRAPQ86VF7 1730 aa10.69□□□□□ -0.7
USP4-211ENST00000485450 KIF20BQ96Q89 1820 aa10.69□□□□□ -0.7
USP4-211ENST00000485450 NWD2Q9ULI1 1742 aa10.69□□□□□ -0.7
USP4-211ENST00000485450 CERKQ8TCT0 537 aa10.69□□□□□ -0.7
USP4-211ENST00000485450 C1orf167Q5SNV9 1468 aa10.69□□□□□ -0.7
USP4-211ENST00000485450 CD163L1Q9NR16 1453 aa10.69□□□□□ -0.7
USP4-211ENST00000485450 CAMTA1Q9Y6Y1 1673 aa10.69□□□□□ -0.7
USP4-211ENST00000485450 PIK3C2AO00443 1686 aa10.68□□□□□ -0.7
USP4-211ENST00000485450 POLR3AO14802 1390 aaPredicted RBP10.68□□□□□ -0.7
USP4-211ENST00000485450 TMEM94Q12767 1356 aa10.68□□□□□ -0.7
USP4-211ENST00000485450 SLIT3O75094 1523 aa10.68□□□□□ -0.7
USP4-211ENST00000485450 L3MBTL2Q969R5 705 aa10.67□□□□□ -0.7
USP4-211ENST00000485450 EIF3AQ14152 1382 aaKnown RBP10.67□□□□□ -0.7
USP4-211ENST00000485450 PLCH1Q4KWH8 1693 aa10.66□□□□□ -0.7
USP4-211ENST00000485450 LMO7Q8WWI1 1683 aa10.66□□□□□ -0.7
USP4-211ENST00000485450 COL18A1P39060 1754 aa10.66□□□□□ -0.7
USP4-211ENST00000485450 PPP1R15AO75807 674 aaPredicted RBP10.65□□□□□ -0.7
USP4-211ENST00000485450 NBPF8Q3BBV2 869 aa10.65□□□□□ -0.7
USP4-211ENST00000485450 FANCIQ9NVI1 1328 aa10.65□□□□□ -0.7
USP4-211ENST00000485450 PLEKHH1Q9ULM0 1364 aa10.65□□□□□ -0.71
USP4-211ENST00000485450 CPSF1Q10570 1443 aaKnown RBP10.64□□□□□ -0.71
USP4-211ENST00000485450 AMOTL2Q9Y2J4 779 aa10.63□□□□□ -0.71
USP4-211ENST00000485450 NINLQ9Y2I6 1382 aa10.63□□□□□ -0.71
USP4-211ENST00000485450 FAM208AQ9UK61 1670 aaKnown RBP10.63□□□□□ -0.71
USP4-211ENST00000485450 FBXO41Q8TF61 875 aa10.62□□□□□ -0.71
USP4-211ENST00000485450 SIN3AQ96ST3 1273 aa10.61□□□□□ -0.71
USP4-211ENST00000485450 MSH6P52701 1360 aa10.61□□□□□ -0.71
USP4-211ENST00000485450 CFAP70Q5T0N1 1121 aa10.6□□□□□ -0.71
USP4-211ENST00000485450 SBNO1A3KN83 1393 aa10.6□□□□□ -0.71
USP4-211ENST00000485450 C19orf44Q9H6X5 657 aa10.6□□□□□ -0.71
USP4-211ENST00000485450 DCAF11Q8TEB1 546 aa10.59□□□□□ -0.71
USP4-211ENST00000485450 BCANQ96GW7 911 aa10.59□□□□□ -0.71
USP4-211ENST00000485450 TONSLQ96HA7 1378 aa10.59□□□□□ -0.71
USP4-211ENST00000485450 TESK2Q96S53 571 aa10.59□□□□□ -0.71
USP4-211ENST00000485450 STAG3Q9UJ98 1225 aa10.59□□□□□ -0.71
USP4-211ENST00000485450 COL14A1Q05707 1796 aaKnown RBP10.59□□□□□ -0.71
USP4-211ENST00000485450 NFAT5O94916 1531 aa10.58□□□□□ -0.72
USP4-211ENST00000485450 FKBP8Q14318 412 aa10.58□□□□□ -0.72
USP4-211ENST00000485450 ZNF326Q5BKZ1 582 aaKnown RBP10.58□□□□□ -0.72
USP4-211ENST00000485450 SLC26A8Q96RN1 970 aa10.58□□□□□ -0.72
USP4-211ENST00000485450 SOS2Q07890 1332 aaPredicted RBP10.57□□□□□ -0.72
USP4-211ENST00000485450 ROCK2O75116 1388 aaKnown RBP10.56□□□□□ -0.72
USP4-211ENST00000485450 PLEKHG3A1L390 1219 aa10.55□□□□□ -0.72
USP4-211ENST00000485450 NBPF1Q3BBV0 1214 aa10.55□□□□□ -0.72
USP4-211ENST00000485450 RGPD1P0DJD0 1748 aa10.54□□□□□ -0.72
USP4-211ENST00000485450 LTN1O94822 1766 aa10.54□□□□□ -0.72
USP4-211ENST00000485450 CADPS2Q86UW7 1296 aa10.54□□□□□ -0.72
USP4-211ENST00000485450 ZMYND15Q9H091 742 aa10.54□□□□□ -0.72
USP4-211ENST00000485450 USP31Q70CQ4 1352 aa10.54□□□□□ -0.72
USP4-211ENST00000485450 THSD7AQ9UPZ6 1657 aa10.54□□□□□ -0.72
USP4-211ENST00000485450 PRR36Q9H6K5 1346 aa10.53□□□□□ -0.72
USP4-211ENST00000485450 SMG6Q86US8 1419 aaKnown RBP10.53□□□□□ -0.72
USP4-211ENST00000485450 USP47Q96K76 1375 aa10.52□□□□□ -0.72
USP4-211ENST00000485450 TNS3Q68CZ2 1445 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms