RNA–Protein interactions for RNA: ENST00000482399.5

VPS52-218, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2 BASIC

Gene VPS52, Length 3,338 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-218ENST00000482399 TMEM57Q8N5G2 664 aa15.93■□□□□ 0.14
VPS52-218ENST00000482399 GBP4Q96PP9 640 aa15.93■□□□□ 0.14
VPS52-218ENST00000482399 TRIM27P14373 513 aa15.93■□□□□ 0.14
VPS52-218ENST00000482399 FBLN1P23142 703 aa15.93■□□□□ 0.14
VPS52-218ENST00000482399 DDX19BQ9UMR2 479 aa15.93■□□□□ 0.14
VPS52-218ENST00000482399 POLR1AO95602 1720 aaPredicted RBP15.92■□□□□ 0.14
VPS52-218ENST00000482399 MINK1Q8N4C8 1332 aaPredicted RBP15.92■□□□□ 0.14
VPS52-218ENST00000482399 PLEKHG5O94827 1062 aa15.92■□□□□ 0.14
VPS52-218ENST00000482399 THUMPD2Q9BTF0 503 aaKnown RBP15.92■□□□□ 0.14
VPS52-218ENST00000482399 ASXL1Q8IXJ9 1541 aa15.91■□□□□ 0.14
VPS52-218ENST00000482399 KDM5DQ9BY66 1539 aa15.91■□□□□ 0.14
VPS52-218ENST00000482399 HMOX1P09601 288 aa15.91■□□□□ 0.14
VPS52-218ENST00000482399 SOX12O15370 315 aa15.91■□□□□ 0.14
VPS52-218ENST00000482399 TRMT2AQ8IZ69 625 aaKnown RBP15.91■□□□□ 0.14
VPS52-218ENST00000482399 UBE2Q2Q8WVN8 375 aa15.91■□□□□ 0.14
VPS52-218ENST00000482399 IPO8O15397 1037 aaKnown RBP15.91■□□□□ 0.14
VPS52-218ENST00000482399 FOXD4L6Q3SYB3 417 aaPredicted RBP15.91■□□□□ 0.14
VPS52-218ENST00000482399 FOXD4L3Q6VB84 417 aaPredicted RBP15.91■□□□□ 0.14
VPS52-218ENST00000482399 GRPEL1Q9HAV7 217 aa15.91■□□□□ 0.14
VPS52-218ENST00000482399 DDX49Q9Y6V7 483 aaKnown RBP15.91■□□□□ 0.14
VPS52-218ENST00000482399 ADGBQ8N7X0 1667 aa15.9■□□□□ 0.14
VPS52-218ENST00000482399 SCAF11Q99590 1463 aaKnown RBP15.9■□□□□ 0.14
VPS52-218ENST00000482399 WDR7Q9Y4E6 1490 aa15.9■□□□□ 0.14
VPS52-218ENST00000482399 DDX11L8A8MPP1 907 aa15.9■□□□□ 0.14
VPS52-218ENST00000482399 NOL8Q76FK4 1167 aaKnown RBP15.9■□□□□ 0.14
VPS52-218ENST00000482399 MRE11P49959 708 aa15.89■□□□□ 0.13
VPS52-218ENST00000482399 ATF7IPQ6VMQ6 1270 aa15.89■□□□□ 0.13
VPS52-218ENST00000482399 NGEFQ8N5V2 710 aa15.89■□□□□ 0.13
VPS52-218ENST00000482399 RBM42Q9BTD8 480 aaKnown RBP15.89■□□□□ 0.13
VPS52-218ENST00000482399 WDR63Q8IWG1 891 aa15.88■□□□□ 0.13
VPS52-218ENST00000482399 SHANK2Q9UPX8 1470 aa15.88■□□□□ 0.13
VPS52-218ENST00000482399 CEP170Q5SW79 1584 aa15.88■□□□□ 0.13
VPS52-218ENST00000482399 ABCC10Q5T3U5 1492 aa15.88■□□□□ 0.13
VPS52-218ENST00000482399 SCAPERQ9BY12 1400 aa15.87■□□□□ 0.13
VPS52-218ENST00000482399 ANTXR1Q9H6X2 564 aa15.86■□□□□ 0.13
VPS52-218ENST00000482399 PIK3C2GO75747 1445 aa15.86■□□□□ 0.13
VPS52-218ENST00000482399 TNPO1Q92973 898 aaKnown RBP15.86■□□□□ 0.13
VPS52-218ENST00000482399 ESPNB1AK53 854 aa15.85■□□□□ 0.13
VPS52-218ENST00000482399 MSNP26038 577 aaKnown RBP15.85■□□□□ 0.13
VPS52-218ENST00000482399 TMPOP42166 694 aaKnown RBP15.85■□□□□ 0.13
VPS52-218ENST00000482399 TRAPPC8Q9Y2L5 1435 aa15.84■□□□□ 0.13
VPS52-218ENST00000482399 EVC2Q86UK5 1308 aa15.84■□□□□ 0.13
VPS52-218ENST00000482399 MCTP1Q6DN14 999 aa15.83■□□□□ 0.13
VPS52-218ENST00000482399 EIF4G3O43432 1585 aaKnown RBP15.82■□□□□ 0.12
VPS52-218ENST00000482399 DIAPH1O60610 1272 aaKnown RBP15.82■□□□□ 0.12
VPS52-218ENST00000482399 CHD1LQ86WJ1 897 aa15.82■□□□□ 0.12
VPS52-218ENST00000482399 PKNOX2Q96KN3 472 aa15.82■□□□□ 0.12
VPS52-218ENST00000482399 SSFA2P28290 1259 aa15.81■□□□□ 0.12
VPS52-218ENST00000482399 MPNDQ8N594 471 aa15.81■□□□□ 0.12
VPS52-218ENST00000482399 TRPM1Q7Z4N2 1603 aa15.81■□□□□ 0.12
VPS52-218ENST00000482399 NPM1P06748 294 aaKnown RBP eCLIP15.81■□□□□ 0.12
VPS52-218ENST00000482399 PRKAR2BP31323 418 aa15.81■□□□□ 0.12
VPS52-218ENST00000482399 PTMAP06454 111 aaKnown RBP15.81■□□□□ 0.12
VPS52-218ENST00000482399 CALD1Q05682 793 aaKnown RBP15.81■□□□□ 0.12
VPS52-218ENST00000482399 NINLQ9Y2I6 1382 aa15.81■□□□□ 0.12
VPS52-218ENST00000482399 RBM10P98175 930 aaKnown RBP15.8■□□□□ 0.12
VPS52-218ENST00000482399 PLCB2Q00722 1185 aa15.8■□□□□ 0.12
VPS52-218ENST00000482399 CAVIN1Q6NZI2 390 aaKnown RBP15.8■□□□□ 0.12
VPS52-218ENST00000482399 NASPP49321 788 aaPredicted RBP15.79■□□□□ 0.12
VPS52-218ENST00000482399 NUP160Q12769 1436 aa15.79■□□□□ 0.12
VPS52-218ENST00000482399 INSRP06213 1382 aa15.79■□□□□ 0.12
VPS52-218ENST00000482399 CDC42BPAQ5VT25 1732 aa15.79■□□□□ 0.12
VPS52-218ENST00000482399 PRDM15P57071 1507 aaPredicted RBP15.79■□□□□ 0.12
VPS52-218ENST00000482399 NUTM2FA1L443 756 aa15.78■□□□□ 0.12
VPS52-218ENST00000482399 DNTTIP2Q5QJE6 756 aaKnown RBP15.78■□□□□ 0.12
VPS52-218ENST00000482399 STAC3Q96MF2 364 aa15.78■□□□□ 0.12
VPS52-218ENST00000482399 PLPPR3Q6T4P5 718 aa15.78■□□□□ 0.12
VPS52-218ENST00000482399 SLC4A10Q6U841 1118 aa15.78■□□□□ 0.12
VPS52-218ENST00000482399 RNF214Q8ND24 703 aa15.78■□□□□ 0.12
VPS52-218ENST00000482399 TERF2IPQ9NYB0 399 aa15.78■□□□□ 0.12
VPS52-218ENST00000482399 SAMD9LQ8IVG5 1584 aa15.77■□□□□ 0.12
VPS52-218ENST00000482399 AAMPQ13685 434 aa15.77■□□□□ 0.12
VPS52-218ENST00000482399 HDGFL2Q7Z4V5 671 aaPredicted RBP15.77■□□□□ 0.12
VPS52-218ENST00000482399 FAM13BQ9NYF5 915 aa15.77■□□□□ 0.12
VPS52-218ENST00000482399 NOS1P29475 1434 aa15.77■□□□□ 0.11
VPS52-218ENST00000482399 KIF16BQ96L93 1317 aa15.77■□□□□ 0.11
VPS52-218ENST00000482399 POLR3AO14802 1390 aaPredicted RBP15.77■□□□□ 0.11
VPS52-218ENST00000482399 GAS2L3Q86XJ1 694 aa15.76■□□□□ 0.11
VPS52-218ENST00000482399 DCTN1Q14203 1278 aa15.75■□□□□ 0.11
VPS52-218ENST00000482399 K7ELQ4 463 aaPredicted RBP15.75■□□□□ 0.11
VPS52-218ENST00000482399 CLCN1P35523 988 aa15.75■□□□□ 0.11
VPS52-218ENST00000482399 TBC1D9Q6ZT07 1266 aa15.74■□□□□ 0.11
VPS52-218ENST00000482399 CD2BP2O95400 341 aaKnown RBP15.74■□□□□ 0.11
VPS52-218ENST00000482399 PRPF40AO75400 957 aaKnown RBP15.74■□□□□ 0.11
VPS52-218ENST00000482399 PRAM1Q96QH2 718 aa15.74■□□□□ 0.11
VPS52-218ENST00000482399 R3HCC1Q9Y3T6 440 aaKnown RBP15.74■□□□□ 0.11
VPS52-218ENST00000482399 CABP1Q9NZU7 370 aa15.73■□□□□ 0.11
VPS52-218ENST00000482399 KIAA1211Q6ZU35 1233 aa15.73■□□□□ 0.11
VPS52-218ENST00000482399 GAS2L2Q8NHY3 880 aa15.73■□□□□ 0.11
VPS52-218ENST00000482399 SKOR2Q2VWA4 1001 aaPredicted RBP15.73■□□□□ 0.11
VPS52-218ENST00000482399 CASC1Q6TDU7 716 aa15.73■□□□□ 0.11
VPS52-218ENST00000482399 ADCY10Q96PN6 1610 aa15.72■□□□□ 0.11
VPS52-218ENST00000482399 EIF2AK4Q9P2K8 1649 aaKnown RBP15.72■□□□□ 0.11
VPS52-218ENST00000482399 VGFO15240 615 aaPredicted RBP15.72■□□□□ 0.11
VPS52-218ENST00000482399 TSPYL6Q8N831 410 aa15.72■□□□□ 0.11
VPS52-218ENST00000482399 CROCC2H7BZ55 1655 aa15.72■□□□□ 0.11
VPS52-218ENST00000482399 SMARCA5O60264 1052 aaPredicted RBP15.72■□□□□ 0.11
VPS52-218ENST00000482399 CHAMP1Q96JM3 812 aa15.72■□□□□ 0.11
VPS52-218ENST00000482399 HDAC1Q13547 482 aaPredicted RBP15.71■□□□□ 0.11
VPS52-218ENST00000482399 MLECQ14165 292 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms